Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0009547

Physical Location & Seq

Genomic Coordinates Reverse (-)

22656457 .. 22661198

Gene Structure 4742 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG233400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGCGGCAGCCTCTTCTCCCTCCCCAGCCCTAAGCGCCACCACCTCCGACGCCTCTCATGCCCCCTCCGCCGCCGTCCCCGCCCCGCCCTTCTCCGCGGCTTTCCGCTCCGAAACTCCGACCAAGACGCTCCGCGGCCTCAACAAGCCCAAGTGCAAGGTCTGCGGCAATGTCGCTCGCTCCAGGTGTCCGTTTGAGTCTTGCAAGAGTTGCTGCTCAAGAGCTCAAAATCCATGTCACATTCATGTCTTGAAAGCAAATACAACTATTCCAGACAAGGCACCAGCCTCAAGCAGTCCTCAATTTGACCATCAGTCAACTGAGACATCATCATCCGGGAATTCGCATAGAGTTGCATCACTCCGACAACTTTCAAACAATTTTGCGCAATTCAATAATGTGCATATTACACTTCGCACAAAGAAGCCGCTGACCAGAAAGGCATTTCCTTGGCACTATATTTTTGTTCTTGTACTATTTTTTGGTGAGAATTACTTGTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF702

Protein Analysis

167

Amino Acids

18.05

Weight (kDa)

9.83

Isoelectric Point (pI)

69.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009547)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32730
fragaria_vesca	FvH4_5g20870
malus_domestica	MD06G1043400.v1.1 MD16G1267400.v1.1
prunus_persica	Prupe.5G050200_v2.0.a1
pyrus_communis	pycom06g03630 pycom06g03640 pycom16g23690
rosa_chinensis	RchiOBHm_Chr7g0207891
rosa_laevigata	RLG00000003278
rosa_multiflora	Rmu_co7991772.1_g000001 Rmu_sc0006577.1_g000002 Rmu_ssc0000451.1_g000023
rosa_roxburghii	Rroxscaffold_3G00251070
rosa_rugosa	Rorug07G0100100
rosa_samantha	Rh2CG132500 Rh7AG233300 Rh7AG233400 Rh7BG229000 Rh7CG248700 Rh7DG239400
rosa_wichuraiana	Rw7G020030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	387
AccB1I	GGYRCC	1 cut(s)	280
AccBSI	CCGCTC	1 cut(s)	108
AccII	CGCG	2 cut(s)	98, 135
AcsI	RAATTY	1 cut(s)	340
AcyI	GRCGYC	1 cut(s)	51
AfaI	GTAC	1 cut(s)	474
AgsI	TTSAA	3 cut(s)	253, 375, 394
AhdI	GACNNNNNGTC	1 cut(s)	313
AjnI	CCWGG	1 cut(s)	182
AluBI	AGCT	1 cut(s)	224
AluI	AGCT	1 cut(s)	224
Alw21I	GWGCWC	1 cut(s)	226
Alw26I	GTCTC	1 cut(s)	317
AoxI	GGCC	1 cut(s)	136
ApeKI	GCWGC	2 cut(s)	8, 213
ApoI	RAATTY	1 cut(s)	340
ArsI	GACNNNNNNTTYG	2 cut(s)	220, 252
AspLEI	GCGC	2 cut(s)	38, 388
AsuC2I	CCSGG	1 cut(s)	337
AsuHPI	GGTGA	1 cut(s)	497
BanI	GGYRCC	1 cut(s)	280
BanII	GRGCYC	1 cut(s)	226
Bbv12I	GWGCWC	1 cut(s)	226
BbvI	GCAGC	2 cut(s)	20, 200
BccI	CCATC	1 cut(s)	318
BceAI	ACGGC	1 cut(s)	59
BciT130I	CCWGG	1 cut(s)	184
BcnI	CCSGG	1 cut(s)	337
BcoDI	GTCTC	1 cut(s)	317
BfoI	RGCGCY	1 cut(s)	39
BisI	GCNGC	8 cut(s)	6, 9, 72, 99, 136, 166, 214, 428
BlsI	GCNGC	8 cut(s)	7, 10, 73, 100, 137, 167, 215, 429
Bme1390I	CCNGG	2 cut(s)	184, 337
BmeRI	GACNNNNNGTC	1 cut(s)	313
BmiI	GGNNCC	1 cut(s)	282
BmrFI	CCNGG	2 cut(s)	184, 337
BmsI	GCATC	1 cut(s)	365
BpmI	CTGGAG	1 cut(s)	166
Bpu10I	CCTNAGC	1 cut(s)	32
BpuEI	CTTGAG	2 cut(s)	202, 274
BpuMI	CCSGG	1 cut(s)	337
BsaHI	GRCGYC	1 cut(s)	51
BsaJI	CCNNGG	3 cut(s)	96, 133, 449
Bse3DI	GCAATG	1 cut(s)	175
BseBI	CCWGG	1 cut(s)	184
BseDI	CCNNGG	3 cut(s)	96, 133, 449
BseGI	GGATG	1 cut(s)	332
BseMI	GCAATG	1 cut(s)	175
BseMII	CTCAG	1 cut(s)	312
BseXI	GCAGC	2 cut(s)	20, 200
BseYI	CCCAGC	1 cut(s)	25
Bsh1236I	CGCG	2 cut(s)	98, 135
BshFI	GGCC	1 cut(s)	138
BshNI	GGYRCC	1 cut(s)	280
BsiHKAI	GWGCWC	1 cut(s)	226
BsiSI	CCGG	1 cut(s)	336
BslFI	GGGAC	1 cut(s)	62
BsmAI	GTCTC	1 cut(s)	317
BsmFI	GGGAC	1 cut(s)	62
BsnI	GGCC	1 cut(s)	138
Bsp1286I	GDGCHC	1 cut(s)	226
BspANI	GGCC	1 cut(s)	138
BspCNI	CTCAG	1 cut(s)	313
BspFNI	CGCG	2 cut(s)	98, 135
BspLI	GGNNCC	1 cut(s)	282
BspT107I	GGYRCC	1 cut(s)	280
BsrBI	CCGCTC	1 cut(s)	108
BsrDI	GCAATG	1 cut(s)	175
BssECI	CCNNGG	3 cut(s)	96, 133, 449
BssNI	GRCGYC	1 cut(s)	51
BssT1I	CCWWGG	1 cut(s)	449
Bst2UI	CCWGG	1 cut(s)	184
Bst6I	CTCTTC	1 cut(s)	19
BstACI	GRCGYC	1 cut(s)	51
BstAPI	GCANNNNNTGC	2 cut(s)	162, 210
BstC8I	GCNNGC	1 cut(s)	178
BstDEI	CTNAG	2 cut(s)	32, 321
BstDSI	CCRYGG	2 cut(s)	96, 133
BstF5I	GGATG	1 cut(s)	332
BstFNI	CGCG	2 cut(s)	98, 135
BstH2I	RGCGCY	1 cut(s)	39
BstHHI	GCGC	2 cut(s)	38, 388
BstMAI	GTCTC	1 cut(s)	317
BstMWI	GCNNNNNNNGC	6 cut(s)	35, 59, 68, 80, 162, 210
BstNI	CCWGG	1 cut(s)	184
BstSCI	CCNGG	2 cut(s)	182, 335
BstUI	CGCG	2 cut(s)	98, 135
BstV1I	GCAGC	2 cut(s)	20, 200
BsuRI	GGCC	1 cut(s)	138
BtgI	CCRYGG	2 cut(s)	96, 133
BtsCI	GGATG	1 cut(s)	332
Cac8I	GCNNGC	1 cut(s)	178
CfoI	GCGC	2 cut(s)	38, 388
Cfr42I	CCGCGG	2 cut(s)	99, 136
CseI	GACGC	2 cut(s)	59, 136
Csp6I	GTAC	1 cut(s)	473
CviAII	CATG	3 cut(s)	59, 234, 245
CviJI	RGCY	8 cut(s)	11, 29, 101, 138, 148, 224, 287, 427
CviKI_1	RGCY	8 cut(s)	11, 29, 101, 138, 148, 224, 287, 427
CviQI	GTAC	1 cut(s)	473
DdeI	CTNAG	2 cut(s)	32, 321
DriI	GACNNNNNGTC	1 cut(s)	313
Eam1104I	CTCTTC	1 cut(s)	19
Eam1105I	GACNNNNNGTC	1 cut(s)	313
EarI	CTCTTC	1 cut(s)	19
EciI	GGCGGA	1 cut(s)	58
Ecl136II	GAGCTC	1 cut(s)	224
Eco130I	CCWWGG	1 cut(s)	449
Eco24I	GRGCYC	1 cut(s)	226
Eco53kI	GAGCTC	1 cut(s)	224
EcoICRI	GAGCTC	1 cut(s)	224
EcoRI	GAATTC	1 cut(s)	340
EcoRII	CCWGG	1 cut(s)	182
EcoT14I	CCWWGG	1 cut(s)	449
EcoT38I	GRGCYC	1 cut(s)	226
ErhI	CCWWGG	1 cut(s)	449
FaeI	CATG	3 cut(s)	62, 237, 248
FaiI	YATR	6 cut(s)	60, 235, 246, 348, 405, 459
FaqI	GGGAC	1 cut(s)	62
FatI	CATG	3 cut(s)	58, 233, 244
FauI	CCCGC	2 cut(s)	88, 93
Fnu4HI	GCNGC	8 cut(s)	6, 9, 72, 99, 136, 166, 214, 428
FokI	GGATG	1 cut(s)	319
FriOI	GRGCYC	1 cut(s)	226
Fsp4HI	GCNGC	8 cut(s)	6, 9, 72, 99, 136, 166, 214, 428
FspI	TGCGCA	1 cut(s)	387
GlaI	GCGC	2 cut(s)	37, 387
GluI	GCNGC	8 cut(s)	6, 9, 72, 99, 136, 166, 214, 428
GsaI	CCCAGC	1 cut(s)	29
GsuI	CTGGAG	1 cut(s)	166
HaeII	RGCGCY	1 cut(s)	39
HaeIII	GGCC	1 cut(s)	138
HapII	CCGG	1 cut(s)	336
HgaI	GACGC	2 cut(s)	59, 136
HhaI	GCGC	2 cut(s)	38, 388
Hin1I	GRCGYC	1 cut(s)	51
Hin1II	CATG	3 cut(s)	62, 237, 248
Hin6I	GCGC	2 cut(s)	36, 386
HinP1I	GCGC	2 cut(s)	36, 386
HincII	GTYRAC	1 cut(s)	318
HindII	GTYRAC	1 cut(s)	318
HinfI	GANTC	1 cut(s)	197
HpaII	CCGG	1 cut(s)	336
HphI	GGTGA	1 cut(s)	497
Hpy166II	GTNNAC	1 cut(s)	318
Hpy188I	TCNGA	4 cut(s)	49, 112, 120, 365
Hpy188III	TCNNGA	3 cut(s)	219, 250, 272
Hpy8I	GTNNAC	1 cut(s)	318
Hpy99I	CGWCG	1 cut(s)	53
HpyAV	CCTTC	1 cut(s)	100
HpyCH4V	TGCA	4 cut(s)	156, 204, 356, 403
HpyF10VI	GCNNNNNNNGC	6 cut(s)	35, 59, 68, 80, 162, 210
HpyF3I	CTNAG	2 cut(s)	32, 321
Hsp92I	GRCGYC	1 cut(s)	51
Hsp92II	CATG	3 cut(s)	62, 237, 248
HspAI	GCGC	2 cut(s)	36, 386
KspI	CCGCGG	2 cut(s)	99, 136
LmnI	GCTCC	3 cut(s)	113, 135, 185
LpnPI	CCDG	7 cut(s)	39, 169, 196, 285, 297, 349, 448
Lsp1109I	GCAGC	2 cut(s)	20, 200
LweI	GCATC	1 cut(s)	365
MaeIII	GTNAC	1 cut(s)	236
MbiI	CCGCTC	1 cut(s)	108
MboII	GAAGA	1 cut(s)	6
MhlI	GDGCHC	1 cut(s)	226
MluCI	AATT	5 cut(s)	302, 340, 379, 389, 490
MlyI	GAGTC	1 cut(s)	206
MmeI	TCCRAC	3 cut(s)	72, 143, 388
MnlI	CCTC	8 cut(s)	22, 31, 55, 64, 76, 149, 298, 309
MslI	CAYNNNNRTG	1 cut(s)	243
MspA1I	CMGCKG	3 cut(s)	98, 135, 430
MspI	CCGG	1 cut(s)	336
MspR9I	CCNGG	2 cut(s)	184, 337
MvaI	CCWGG	1 cut(s)	184
MvnI	CGCG	2 cut(s)	98, 135
MwoI	GCNNNNNNNGC	6 cut(s)	35, 59, 68, 80, 162, 210
NciI	CCSGG	1 cut(s)	337
NlaIII	CATG	3 cut(s)	62, 237, 248
NlaIV	GGNNCC	1 cut(s)	282
NmuCI	GTSAC	1 cut(s)	236
NsbI	TGCGCA	1 cut(s)	387
PfoI	TCCNGGA	1 cut(s)	335
PkrI	GCNGC	8 cut(s)	7, 10, 73, 100, 137, 167, 215, 429
PleI	GAGTC	1 cut(s)	205
PpsI	GAGTC	1 cut(s)	205
Psp124BI	GAGCTC	1 cut(s)	226
Psp6I	CCWGG	1 cut(s)	182
PspFI	CCCAGC	1 cut(s)	25
PspGI	CCWGG	1 cut(s)	182
PspN4I	GGNNCC	1 cut(s)	282
RsaI	GTAC	1 cut(s)	474
RsaNI	GTAC	1 cut(s)	473
RseI	CAYNNNNRTG	1 cut(s)	243
SacI	GAGCTC	1 cut(s)	226
SacII	CCGCGG	2 cut(s)	99, 136
SatI	GCNGC	8 cut(s)	6, 9, 72, 99, 136, 166, 214, 428
SchI	GAGTC	1 cut(s)	206
ScrFI	CCNGG	2 cut(s)	184, 337
SduI	GDGCHC	1 cut(s)	226
SetI	ASST	4 cut(s)	47, 162, 188, 226
SfaNI	GCATC	1 cut(s)	365
Sfr303I	CCGCGG	2 cut(s)	99, 136
SgrBI	CCGCGG	2 cut(s)	99, 136
SmiMI	CAYNNNNRTG	1 cut(s)	243
SmlI	CTYRAG	2 cut(s)	217, 289
SmoI	CTYRAG	2 cut(s)	217, 289
Sse9I	AATT	5 cut(s)	302, 340, 379, 389, 490
SstI	GAGCTC	1 cut(s)	226
StyD4I	CCNGG	2 cut(s)	182, 335
StyI	CCWWGG	1 cut(s)	449
TasI	AATT	5 cut(s)	302, 340, 379, 389, 490
TatI	WGTACW	1 cut(s)	472
TauI	GCSGC	6 cut(s)	8, 74, 101, 138, 168, 430
TseFI	GTSAC	1 cut(s)	236
TseI	GCWGC	2 cut(s)	8, 213
Tsp45I	GTSAC	1 cut(s)	236
TspDTI	ATGAA	1 cut(s)	233
TspGWI	ACGGA	1 cut(s)	180
XapI	RAATTY	1 cut(s)	340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.