Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0009547

Physical Location & Seq

Genomic Coordinates Reverse (-)

22655746 .. 22656345

Gene Structure 600 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG233300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGCAGAACATCAGCTTATTAGAGGAAGTGTTTTCTGTGAACTCTAATGCGGAAGAGTCCATCGGGGATGGATCATCCATATCAAACCATGACATGACTACTACAGAAGGTGACAATGGGGATATGGTCTCAGGGTTGAAGTTAAAGTTGAGATCAAATCCAATGAGAACCAGTAATTTCAGAAAGAGGATACAGCAAATTGTTGATCAGGGATTAAAGAAGCTTAAAACATGTGAGTCTGCTGATGGAGATAAGGAACCGAGTGACCAAATTGAATTGGATATGGGGCCCAGAAAAGGAGAAAATTGGCGGGCTGCAAGGGCTTCAGCTTTAGGTGATCTCATTGATAAGTTGAACAAAGCCCGAAATGAGGAGGATCTACAGTCTTGCATGGAGATGAAGACTCAACTCTTCAATGAACTGAAATCTATGAGCAGCTCAGAATTGGAAGACACAGAGACCACGAAGAATGACTTGGAAACCAGGAAAGAGTCGCAATATTTATTTCCTCATTTGATTAGTACCAATGAAATTGATCAAGAAACTCTCAGTAGCGTCAATGCGCACTTCTCTTCCCTGGAGCAGATAGAAGGTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF702

Protein Analysis

199

Amino Acids

22.31

Weight (kDa)

4.68

Isoelectric Point (pI)

43.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009547)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32730
fragaria_vesca	FvH4_5g20870
malus_domestica	MD06G1043400.v1.1 MD16G1267400.v1.1
prunus_persica	Prupe.5G050200_v2.0.a1
pyrus_communis	pycom06g03630 pycom06g03640 pycom16g23690
rosa_chinensis	RchiOBHm_Chr7g0207891
rosa_laevigata	RLG00000003278
rosa_multiflora	Rmu_co7991772.1_g000001 Rmu_sc0006577.1_g000002 Rmu_ssc0000451.1_g000023
rosa_roxburghii	Rroxscaffold_3G00251070
rosa_rugosa	Rorug07G0100100
rosa_samantha	Rh2CG132500 Rh7AG233300 Rh7AG233400 Rh7BG229000 Rh7CG248700 Rh7DG239400
rosa_wichuraiana	Rw7G020030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	564
AciI	CCGC	2 cut(s)	50, 310
AclWI	GGATC	2 cut(s)	79, 384
AcuI	CTGAAG	1 cut(s)	309
AfaI	GTAC	1 cut(s)	523
AfiI	CCNNNNNNNGG	2 cut(s)	296, 370
AflIII	ACRYGT	1 cut(s)	230
AgsI	TTSAA	4 cut(s)	139, 275, 355, 415
AjnI	CCWGG	2 cut(s)	482, 576
AjuI	GAANNNNNNNTTGG	2 cut(s)	458, 490
AluBI	AGCT	4 cut(s)	15, 223, 329, 438
AluI	AGCT	4 cut(s)	15, 223, 329, 438
Alw26I	GTCTC	2 cut(s)	133, 452
AlwI	GGATC	2 cut(s)	79, 384
AoxI	GGCC	1 cut(s)	287
ApaI	GGGCCC	1 cut(s)	291
ApeKI	GCWGC	2 cut(s)	314, 435
AspLEI	GCGC	1 cut(s)	565
AspS9I	GGNCC	2 cut(s)	287, 288
AsuHPI	GGTGA	2 cut(s)	122, 347
BaeGI	GKGCMC	1 cut(s)	291
BanII	GRGCYC	1 cut(s)	291
BbsI	GAAGAC	2 cut(s)	407, 456
BbvI	GCAGC	2 cut(s)	301, 447
BccI	CCATC	3 cut(s)	62, 68, 239
BciT130I	CCWGG	2 cut(s)	484, 578
BciVI	GTATCC	1 cut(s)	183
BclI	TGATCA	2 cut(s)	205, 535
BcoDI	GTCTC	2 cut(s)	133, 452
BfmI	CTRYAG	2 cut(s)	102, 380
BfuI	GTATCC	1 cut(s)	183
BisI	GCNGC	2 cut(s)	315, 436
BlsI	GCNGC	2 cut(s)	316, 437
Bme1390I	CCNGG	2 cut(s)	484, 578
BmgT120I	GGNCC	2 cut(s)	287, 288
BmiI	GGNNCC	3 cut(s)	258, 288, 289
BmrFI	CCNGG	2 cut(s)	484, 578
BpiI	GAAGAC	2 cut(s)	407, 456
BpmI	CTGGAG	1 cut(s)	599
BsaI	GGTCTC	2 cut(s)	133, 452
BsaJI	CCNNGG	1 cut(s)	576
Bsc4I	CCNNNNNNNGG	2 cut(s)	296, 370
Bse1I	ACTGG	1 cut(s)	171
BseBI	CCWGG	2 cut(s)	484, 578
BseDI	CCNNGG	1 cut(s)	576
BseGI	GGATG	2 cut(s)	73, 74
BseLI	CCNNNNNNNGG	2 cut(s)	296, 370
BseMII	CTCAG	3 cut(s)	144, 453, 562
BseNI	ACTGG	1 cut(s)	171
BseRI	GAGGAG	1 cut(s)	386
BseSI	GKGCMC	1 cut(s)	291
BseXI	GCAGC	2 cut(s)	301, 447
BshFI	GGCC	1 cut(s)	289
BslI	CCNNNNNNNGG	2 cut(s)	296, 370
BsmAI	GTCTC	2 cut(s)	133, 452
BsnI	GGCC	1 cut(s)	289
Bso31I	GGTCTC	2 cut(s)	133, 452
Bsp120I	GGGCCC	1 cut(s)	287
Bsp1286I	GDGCHC	1 cut(s)	291
Bsp143I	GATC	6 cut(s)	71, 152, 205, 337, 376, 535
BspACI	CCGC	2 cut(s)	50, 310
BspANI	GGCC	1 cut(s)	289
BspCNI	CTCAG	3 cut(s)	143, 452, 561
BspLI	GGNNCC	3 cut(s)	258, 288, 289
BspPI	GGATC	2 cut(s)	79, 384
BspTNI	GGTCTC	2 cut(s)	133, 452
BsrI	ACTGG	1 cut(s)	171
BssECI	CCNNGG	1 cut(s)	576
BssMI	GATC	6 cut(s)	71, 152, 205, 337, 376, 535
Bst2UI	CCWGG	2 cut(s)	484, 578
Bst4CI	ACNGT	1 cut(s)	384
Bst6I	CTCTTC	3 cut(s)	48, 416, 577
BstC8I	GCNNGC	1 cut(s)	312
BstDEI	CTNAG	3 cut(s)	130, 439, 548
BstF5I	GGATG	2 cut(s)	73, 74
BstHHI	GCGC	1 cut(s)	565
BstKTI	GATC	6 cut(s)	74, 155, 208, 340, 379, 538
BstMAI	GTCTC	2 cut(s)	133, 452
BstMBI	GATC	6 cut(s)	71, 152, 205, 337, 376, 535
BstMWI	GCNNNNNNNGC	1 cut(s)	320
BstNI	CCWGG	2 cut(s)	484, 578
BstNSI	RCATGY	1 cut(s)	234
BstSCI	CCNGG	2 cut(s)	482, 576
BstSFI	CTRYAG	2 cut(s)	102, 380
BstSLI	GKGCMC	1 cut(s)	291
BstV1I	GCAGC	2 cut(s)	301, 447
BstV2I	GAAGAC	2 cut(s)	407, 456
BstX2I	RGATCY	1 cut(s)	376
BstYI	RGATCY	1 cut(s)	376
BsuI	GTATCC	1 cut(s)	183
BsuRI	GGCC	1 cut(s)	289
BtsCI	GGATG	2 cut(s)	73, 74
Cac8I	GCNNGC	1 cut(s)	312
CfoI	GCGC	1 cut(s)	565
Cfr13I	GGNCC	2 cut(s)	287, 288
CseI	GACGC	1 cut(s)	544
Csp6I	GTAC	1 cut(s)	522
CviAII	CATG	4 cut(s)	89, 94, 231, 391
CviJI	RGCY	8 cut(s)	15, 223, 289, 314, 323, 329, 362, 438
CviKI_1	RGCY	8 cut(s)	15, 223, 289, 314, 323, 329, 362, 438
CviQI	GTAC	1 cut(s)	522
DdeI	CTNAG	3 cut(s)	130, 439, 548
DpnI	GATC	6 cut(s)	73, 154, 207, 339, 378, 537
DpnII	GATC	6 cut(s)	71, 152, 205, 337, 376, 535
Eam1104I	CTCTTC	3 cut(s)	48, 416, 577
EarI	CTCTTC	3 cut(s)	48, 416, 577
Eco24I	GRGCYC	1 cut(s)	291
Eco31I	GGTCTC	2 cut(s)	133, 452
Eco57I	CTGAAG	1 cut(s)	309
EcoO109I	RGGNCCY	1 cut(s)	287
EcoRII	CCWGG	2 cut(s)	482, 576
EcoT38I	GRGCYC	1 cut(s)	291
FaeI	CATG	4 cut(s)	92, 97, 234, 394
FaiI	YATR	9 cut(s)	80, 90, 95, 125, 232, 284, 392, 431, 598
FalI	AAGNNNNNCTT	2 cut(s)	458, 490
FatI	CATG	4 cut(s)	88, 93, 230, 390
FauI	CCCGC	1 cut(s)	303
FbaI	TGATCA	2 cut(s)	205, 535
Fnu4HI	GCNGC	2 cut(s)	315, 436
FokI	GGATG	2 cut(s)	61, 80
FriOI	GRGCYC	1 cut(s)	291
Fsp4HI	GCNGC	2 cut(s)	315, 436
FspAI	RTGCGCAY	1 cut(s)	564
FspI	TGCGCA	1 cut(s)	564
GlaI	GCGC	1 cut(s)	564
GluI	GCNGC	2 cut(s)	315, 436
GsuI	CTGGAG	1 cut(s)	599
HaeIII	GGCC	1 cut(s)	289
HgaI	GACGC	1 cut(s)	544
HhaI	GCGC	1 cut(s)	565
Hin1II	CATG	4 cut(s)	92, 97, 234, 394
Hin6I	GCGC	1 cut(s)	563
HinP1I	GCGC	1 cut(s)	563
HindIII	AAGCTT	1 cut(s)	221
HinfI	GANTC	4 cut(s)	56, 236, 403, 491
HphI	GGTGA	2 cut(s)	122, 347
Hpy166II	GTNNAC	1 cut(s)	40
Hpy188I	TCNGA	2 cut(s)	182, 442
Hpy188III	TCNNGA	1 cut(s)	539
Hpy8I	GTNNAC	1 cut(s)	40
HpyAV	CCTTC	2 cut(s)	101, 584
HpyCH4III	ACNGT	1 cut(s)	384
HpyCH4V	TGCA	3 cut(s)	4, 317, 390
HpyF10VI	GCNNNNNNNGC	1 cut(s)	320
HpyF3I	CTNAG	3 cut(s)	130, 439, 548
Hsp92II	CATG	4 cut(s)	92, 97, 234, 394
HspAI	GCGC	1 cut(s)	563
Ksp22I	TGATCA	2 cut(s)	205, 535
Kzo9I	GATC	6 cut(s)	71, 152, 205, 337, 376, 535
LmnI	GCTCC	1 cut(s)	580
LpnPI	CCDG	8 cut(s)	117, 184, 194, 304, 469, 496, 563, 590
Lsp1109I	GCAGC	2 cut(s)	301, 447
MaeIII	GTNAC	2 cut(s)	110, 263
MalI	GATC	6 cut(s)	73, 154, 207, 339, 378, 537
MboI	GATC	6 cut(s)	71, 152, 205, 337, 376, 535
MboII	GAAGA	6 cut(s)	65, 403, 412, 461, 478, 564
MflI	RGATCY	1 cut(s)	376
MhlI	GDGCHC	1 cut(s)	291
MluCI	AATT	7 cut(s)	175, 198, 270, 275, 304, 443, 531
MlyI	GAGTC	4 cut(s)	65, 245, 397, 500
MnlI	CCTC	5 cut(s)	16, 180, 364, 367, 519
MseI	TTAA	3 cut(s)	143, 215, 225
MslI	CAYNNNNRTG	1 cut(s)	395
MspR9I	CCNGG	2 cut(s)	484, 578
MvaI	CCWGG	2 cut(s)	484, 578
MwoI	GCNNNNNNNGC	1 cut(s)	320
NdeII	GATC	6 cut(s)	71, 152, 205, 337, 376, 535
NlaIII	CATG	4 cut(s)	92, 97, 234, 394
NlaIV	GGNNCC	3 cut(s)	258, 288, 289
NmuCI	GTSAC	2 cut(s)	110, 263
NsbI	TGCGCA	1 cut(s)	564
NspI	RCATGY	1 cut(s)	234
PciI	ACATGT	1 cut(s)	230
PkrI	GCNGC	2 cut(s)	316, 437
PleI	GAGTC	4 cut(s)	64, 244, 397, 499
PpsI	GAGTC	4 cut(s)	64, 244, 397, 499
PscI	ACATGT	1 cut(s)	230
Psp6I	CCWGG	2 cut(s)	482, 576
PspGI	CCWGG	2 cut(s)	482, 576
PspN4I	GGNNCC	3 cut(s)	258, 288, 289
PspOMI	GGGCCC	1 cut(s)	287
PspPI	GGNCC	2 cut(s)	287, 288
PsuI	RGATCY	1 cut(s)	376
RsaI	GTAC	1 cut(s)	523
RsaNI	GTAC	1 cut(s)	522
RseI	CAYNNNNRTG	1 cut(s)	395
SaqAI	TTAA	3 cut(s)	143, 215, 225
SatI	GCNGC	2 cut(s)	315, 436
Sau3AI	GATC	6 cut(s)	71, 152, 205, 337, 376, 535
Sau96I	GGNCC	2 cut(s)	287, 288
SchI	GAGTC	4 cut(s)	65, 245, 397, 500
ScrFI	CCNGG	2 cut(s)	484, 578
SduI	GDGCHC	1 cut(s)	291
SetI	ASST	7 cut(s)	17, 112, 225, 331, 337, 440, 595
SfcI	CTRYAG	2 cut(s)	102, 380
SmiMI	CAYNNNNRTG	1 cut(s)	395
Sse9I	AATT	7 cut(s)	175, 198, 270, 275, 304, 443, 531
SsiI	CCGC	2 cut(s)	50, 310
SspI	AATATT	1 cut(s)	500
StyD4I	CCNGG	2 cut(s)	482, 576
TaaI	ACNGT	1 cut(s)	384
TasI	AATT	7 cut(s)	175, 198, 270, 275, 304, 443, 531
Tru1I	TTAA	3 cut(s)	143, 215, 225
Tru9I	TTAA	3 cut(s)	143, 215, 225
TseFI	GTSAC	2 cut(s)	110, 263
TseI	GCWGC	2 cut(s)	314, 435
Tsp45I	GTSAC	2 cut(s)	110, 263
TspDTI	ATGAA	3 cut(s)	413, 432, 543
XceI	RCATGY	1 cut(s)	234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.