pycom06g03640

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0009547
Physical Location & Seq
Forward (+)
4544214 .. 4544666
453 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g03640.1

Sequence Viewer

Length: 453 bp
ATGAGAACCAATAACTTCCGAAAGAGGATACAGCAAGTTGTTGATGAGGGACTAAAGAAGCTTCAGAAACACGAGTTTGATGACGGGGGCAAGAAATCAATTGGACCAAATGGATTGGATAAAGGGCCACCAAAAGAAGAATCATGGTGGGCTGAAAGGGCTTCTGCTTTAGGCGATCTCATTGATAAGCTGAACAAAGCCCGAAACGAGGAGGATCTGAAGGCGTGCTGGGAGTTGAAATCTCAGCTCTTCAGTGAACACAAATTGACTAGTAGATCAGAATCCGAAGAGGCTGACATAACGAAGAAACAGACTGCGAAGAATGATCCGGACCCCCGAAAGGAGTGGAATTGTTTGTTTCCTAAAGTGATTAGCACTACCGAAATTGATCAAGAAACTCTGAAAAGTGTGGATGCTCACTTCTCTACCCTTGAGCAGATAGAAGGTTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF702

Protein Analysis

151

Amino Acids

17.2

Weight (kDa)

5.72

Isoelectric Point (pI)

41.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 328
AclWI GGATC 2 cut(s) 222, 320
AcuI CTGAAG 3 cut(s) 47, 235, 239
AfiI CCNNNNNNNGG 2 cut(s) 208, 340
AgsI TTSAA 1 cut(s) 238
AhlI ACTAGT 1 cut(s) 269
AluBI AGCT 3 cut(s) 61, 190, 247
AluI AGCT 3 cut(s) 61, 190, 247
AlwI GGATC 2 cut(s) 222, 320
Aor13HI TCCGGA 1 cut(s) 328
AoxI GGCC 1 cut(s) 125
AspS9I GGNCC 3 cut(s) 104, 125, 331
AvaII GGWCC 2 cut(s) 104, 331
BauI CACGAG 1 cut(s) 71
BciVI GTATCC 1 cut(s) 21
BclI TGATCA 1 cut(s) 388
BcuI ACTAGT 1 cut(s) 269
BfaI CTAG 1 cut(s) 270
BfuI GTATCC 1 cut(s) 21
Bme18I GGWCC 2 cut(s) 104, 331
BmgT120I GGNCC 3 cut(s) 104, 125, 331
BmiI GGNNCC 1 cut(s) 333
BmsI GCATC 1 cut(s) 403
BpuEI CTTGAG 1 cut(s) 452
BsaBI GATNNNNATC 1 cut(s) 280
BsaWI WCCGGW 1 cut(s) 328
Bsc4I CCNNNNNNNGG 2 cut(s) 208, 340
Bse8I GATNNNNATC 1 cut(s) 280
BseAI TCCGGA 1 cut(s) 328
BseGI GGATG 1 cut(s) 418
BseJI GATNNNNATC 1 cut(s) 280
BseLI CCNNNNNNNGG 2 cut(s) 208, 340
BseMII CTCAG 1 cut(s) 257
BseRI GAGGAG 1 cut(s) 224
BseYI CCCAGC 1 cut(s) 228
BshFI GGCC 1 cut(s) 127
BsiSI CCGG 1 cut(s) 329
BslFI GGGAC 1 cut(s) 63
BslI CCNNNNNNNGG 2 cut(s) 208, 340
BsmFI GGGAC 1 cut(s) 63
BsnI GGCC 1 cut(s) 127
Bsp13I TCCGGA 1 cut(s) 328
Bsp143I GATC 5 cut(s) 175, 214, 275, 325, 388
BspANI GGCC 1 cut(s) 127
BspCNI CTCAG 1 cut(s) 256
BspEI TCCGGA 1 cut(s) 328
BspLI GGNNCC 1 cut(s) 333
BspPI GGATC 2 cut(s) 222, 320
BspQI GCTCTTC 1 cut(s) 254
BssMI GATC 5 cut(s) 175, 214, 275, 325, 388
BssSI CACGAG 1 cut(s) 71
Bst2BI CACGAG 1 cut(s) 71
Bst6I CTCTTC 2 cut(s) 254, 282
BstC8I GCNNGC 1 cut(s) 226
BstDEI CTNAG 1 cut(s) 243
BstF5I GGATG 1 cut(s) 418
BstKTI GATC 5 cut(s) 178, 217, 278, 328, 391
BstMBI GATC 5 cut(s) 175, 214, 275, 325, 388
BstMWI GCNNNNNNNGC 1 cut(s) 158
BstX2I RGATCY 1 cut(s) 214
BstYI RGATCY 1 cut(s) 214
BsuI GTATCC 1 cut(s) 21
BsuRI GGCC 1 cut(s) 127
BtsCI GGATG 1 cut(s) 418
BtsIMutI CAGTG 1 cut(s) 259
Cac8I GCNNGC 1 cut(s) 226
Cfr13I GGNCC 3 cut(s) 104, 125, 331
CviAII CATG 1 cut(s) 144
CviJI RGCY 8 cut(s) 61, 127, 152, 161, 190, 200, 247, 293
CviKI_1 RGCY 8 cut(s) 61, 127, 152, 161, 190, 200, 247, 293
DdeI CTNAG 1 cut(s) 243
DpnI GATC 5 cut(s) 177, 216, 277, 327, 390
DpnII GATC 5 cut(s) 175, 214, 275, 325, 388
Eam1104I CTCTTC 2 cut(s) 254, 282
EarI CTCTTC 2 cut(s) 254, 282
Eco47I GGWCC 2 cut(s) 104, 331
Eco57I CTGAAG 3 cut(s) 47, 235, 239
FaeI CATG 1 cut(s) 147
FaiI YATR 3 cut(s) 145, 299, 451
FaqI GGGAC 1 cut(s) 63
FatI CATG 1 cut(s) 143
FbaI TGATCA 1 cut(s) 388
FokI GGATG 1 cut(s) 425
FspBI CTAG 1 cut(s) 270
GsaI CCCAGC 1 cut(s) 232
HaeIII GGCC 1 cut(s) 127
HapII CCGG 1 cut(s) 329
Hin1II CATG 1 cut(s) 147
HindIII AAGCTT 1 cut(s) 59
HinfI GANTC 2 cut(s) 140, 281
HpaII CCGG 1 cut(s) 329
Hpy166II GTNNAC 1 cut(s) 257
Hpy188I TCNGA 6 cut(s) 20, 66, 219, 280, 286, 402
Hpy188III TCNNGA 2 cut(s) 329, 392
Hpy8I GTNNAC 1 cut(s) 257
HpyAV CCTTC 2 cut(s) 214, 437
HpyF10VI GCNNNNNNNGC 1 cut(s) 158
HpyF3I CTNAG 1 cut(s) 243
Hsp92II CATG 1 cut(s) 147
Kpn2I TCCGGA 1 cut(s) 328
Ksp22I TGATCA 1 cut(s) 388
Kzo9I GATC 5 cut(s) 175, 214, 275, 325, 388
LguI GCTCTTC 1 cut(s) 254
LpnPI CCDG 2 cut(s) 214, 342
LweI GCATC 1 cut(s) 403
MaeI CTAG 1 cut(s) 270
MalI GATC 5 cut(s) 177, 216, 277, 327, 390
MboI GATC 5 cut(s) 175, 214, 275, 325, 388
MboII GAAGA 5 cut(s) 149, 241, 299, 316, 331
MfeI CAATTG 1 cut(s) 99
MflI RGATCY 1 cut(s) 214
MluCI AATT 4 cut(s) 99, 263, 349, 384
MnlI CCTC 5 cut(s) 18, 40, 202, 205, 283
MroI TCCGGA 1 cut(s) 328
MspI CCGG 1 cut(s) 329
MunI CAATTG 1 cut(s) 99
MwoI GCNNNNNNNGC 1 cut(s) 158
NdeII GATC 5 cut(s) 175, 214, 275, 325, 388
NlaIII CATG 1 cut(s) 147
NlaIV GGNNCC 1 cut(s) 333
PciSI GCTCTTC 1 cut(s) 254
PfeI GAWTC 2 cut(s) 140, 281
PspFI CCCAGC 1 cut(s) 228
PspN4I GGNNCC 1 cut(s) 333
PspPI GGNCC 3 cut(s) 104, 125, 331
PsuI RGATCY 1 cut(s) 214
SapI GCTCTTC 1 cut(s) 254
Sau3AI GATC 5 cut(s) 175, 214, 275, 325, 388
Sau96I GGNCC 3 cut(s) 104, 125, 331
SetI ASST 4 cut(s) 63, 192, 249, 448
SfaNI GCATC 1 cut(s) 403
SinI GGWCC 2 cut(s) 104, 331
SmlI CTYRAG 1 cut(s) 431
SmoI CTYRAG 1 cut(s) 431
SpeI ACTAGT 1 cut(s) 269
Sse9I AATT 4 cut(s) 99, 263, 349, 384
SspMI CTAG 1 cut(s) 270
TasI AATT 4 cut(s) 99, 263, 349, 384
TfiI GAWTC 2 cut(s) 140, 281
TscAI CASTG 1 cut(s) 259
TspRI CASTG 1 cut(s) 259
VpaK11BI GGWCC 2 cut(s) 104, 331
XspI CTAG 1 cut(s) 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.