MD06G1043400.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
Physical Location & Seq
Forward (+)
5693745 .. 5700360
6616 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1043400.v1.1.491

Sequence Viewer

Length: 1164 bp
ATGGCAGCTGCTCCTTCGCCCTCGCCTGCCCTAAGCAACTCCAGCTCCGGCGCCACTCGCCCAACCACCACCGCCGCAGCCGACGCGCCTACAGTCGCACCCTTACACCCGGTGCACCGTACTGGCACGCCGCCCAAGACCCTTCGCGGCCTTAACAAGCCTAAGTGTAAGCAGTGCGGCAATGTCGCGCGCTCCAGGTGTCCATACGAGTCATGCAAGAGTTGCTGCTCAAAAGCTCAAAATCCATGTCATATTCATGTTTTGAAAACAAATGCAACTTTTCCAGACAAGGCACAAACCTCAAACTCTCCTCTATTTGACCATCAGTCAACCGAGGCATCACCATCAGGGAATTCCCATAGAGTTGCATCATTCCGGCAACTTTCGAACAATTTTGCTCAATTCAATAATCTGCATATTCCGCTTCGTTCTAAGAAGCCTTTGACCAGAAAGGATGCTGTGGCTATTAATGAATGGAGATTTTCCAAGTTAAAGGAATACAAGGAAAGAAACATTGAAGTGGAAAATGAAGCTTTCGATCGATACATGCAGAACGTCACCCTATTAGAGGAAGTGTTTTCTGTGAAATCTATTACGGAGGAGTCAATTGGGGATGGATCATCCATATCAAACTATGATACTACTAGTACTATGGAAGATGAAACTGAAGCTATGGTGTCAGGACTGAAGTTGAAGTTGAGATCAAATCCAATGAGAACCAATAACTTCCGAAAGAGGATACAGCAAGTTGTTGATGAGGGACTAAAGAAGCTTCAGAAACGCGAGTTTGATGACGGGGGCAAGAAATCAAGTGGACCAAATGGATTGGATAAAGGGCCCCAAAAAGAAGAAACATGGTGGGCTGAAAGGGCTTCTGCTTTAGGTGATCTCATTGATAAGCTGAACAAAGCCCGAAACGAGGAGGATCTGAAGGCGTGCTTGGAGTTGAAATCTCAGCTCTTCAGTGAACACAAATTGACTAGTAGATCAGAATCTGAGGACGCTGACATAACGAAGAAACAGACTGCAAAGAATGATCCGGACCCCCGAAAGGAGTGGAATTGTTTGTTTCCTAAAGTGATTAGCACTACCGAAATTGATCAAGAAACTCTGAAAAGTGTGGATGCTCACTTCTCTACCCTTGAGCAGATAGAAGGTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

388

Amino Acids

43.11

Weight (kDa)

8.59

Isoelectric Point (pI)

50.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 50
AccII CGCG 5 cut(s) 86, 147, 188, 190, 783
AccIII TCCGGA 1 cut(s) 1039
AciI CCGC 6 cut(s) 72, 75, 131, 147, 177, 422
AclWI GGATC 3 cut(s) 625, 933, 1031
AcsI RAATTY 1 cut(s) 352
AcuI CTGAAG 5 cut(s) 687, 707, 758, 946, 950
AcyI GRCGYC 1 cut(s) 51
AdeI CACNNNGTG 1 cut(s) 112
AfaI GTAC 2 cut(s) 121, 649
AfiI CCNNNNNNNGG 3 cut(s) 568, 919, 1051
AgsI TTSAA 5 cut(s) 265, 406, 518, 694, 949
AhdI GACNNNNNGTC 1 cut(s) 325
AhlI ACTAGT 2 cut(s) 644, 980
AjnI CCWGG 1 cut(s) 194
AjuI GAANNNNNNNTTGG 2 cut(s) 923, 955
AluBI AGCT 8 cut(s) 8, 45, 236, 533, 671, 772, 901, 958
AluI AGCT 8 cut(s) 8, 45, 236, 533, 671, 772, 901, 958
Alw21I GWGCWC 1 cut(s) 117
Alw44I GTGCAC 1 cut(s) 113
AlwI GGATC 3 cut(s) 625, 933, 1031
AlwNI CAGNNNCTG 1 cut(s) 995
Aor13HI TCCGGA 1 cut(s) 1039
AoxI GGCC 2 cut(s) 148, 836
ApaI GGGCCC 1 cut(s) 840
ApaLI GTGCAC 1 cut(s) 113
ApeKI GCWGC 4 cut(s) 5, 8, 77, 225
ApoI RAATTY 1 cut(s) 352
ArsI GACNNNNNNTTYG 2 cut(s) 232, 264
AseI ATTAAT 1 cut(s) 468
AspLEI GCGC 4 cut(s) 53, 88, 190, 192
AspS9I GGNCC 4 cut(s) 815, 836, 837, 1042
AsuC2I CCSGG 1 cut(s) 110
AsuHPI GGTGA 3 cut(s) 333, 550, 896
AsuII TTCGAA 1 cut(s) 386
AvaII GGWCC 2 cut(s) 815, 1042
BaeGI GKGCMC 2 cut(s) 117, 840
BanI GGYRCC 1 cut(s) 50
BanII GRGCYC 1 cut(s) 840
Bbv12I GWGCWC 1 cut(s) 117
BbvI GCAGC 3 cut(s) 17, 89, 212
BccI CCATC 3 cut(s) 330, 352, 608
BciT130I CCWGG 1 cut(s) 196
BciVI GTATCC 1 cut(s) 732
BclI TGATCA 1 cut(s) 1099
BcnI CCSGG 1 cut(s) 110
BcuI ACTAGT 2 cut(s) 644, 980
BfaI CTAG 2 cut(s) 645, 981
BfmI CTRYAG 1 cut(s) 90
BfoI RGCGCY 1 cut(s) 54
BfuI GTATCC 1 cut(s) 732
BisI GCNGC 8 cut(s) 6, 9, 75, 78, 131, 148, 178, 226
BlsI GCNGC 8 cut(s) 7, 10, 76, 79, 132, 149, 179, 227
BmcAI AGTACT 1 cut(s) 649
Bme1390I CCNGG 2 cut(s) 110, 196
Bme18I GGWCC 2 cut(s) 815, 1042
BmeRI GACNNNNNGTC 1 cut(s) 325
BmgT120I GGNCC 4 cut(s) 815, 836, 837, 1042
BmiI GGNNCC 4 cut(s) 52, 838, 839, 1044
BmrFI CCNGG 2 cut(s) 110, 196
BmsI GCATC 4 cut(s) 347, 377, 445, 1114
BpmI CTGGAG 2 cut(s) 25, 178
Bpu10I CCTNAGC 1 cut(s) 32
Bpu14I TTCGAA 1 cut(s) 386
BpuEI CTTGAG 1 cut(s) 1163
BpuMI CCSGG 1 cut(s) 110
Bsa29I ATCGAT 1 cut(s) 541
BsaBI GATNNNNATC 1 cut(s) 991
BsaHI GRCGYC 1 cut(s) 51
BsaJI CCNNGG 1 cut(s) 333
BsaWI WCCGGW 1 cut(s) 1039
BsaXI ACNNNNNCTCC 2 cut(s) 29, 59
Bsc4I CCNNNNNNNGG 3 cut(s) 568, 919, 1051
Bse1I ACTGG 1 cut(s) 127
Bse3DI GCAATG 1 cut(s) 187
Bse8I GATNNNNATC 1 cut(s) 991
BseAI TCCGGA 1 cut(s) 1039
BseBI CCWGG 1 cut(s) 196
BseCI ATCGAT 1 cut(s) 541
BseDI CCNNGG 1 cut(s) 333
BseGI GGATG 4 cut(s) 460, 619, 620, 1129
BseJI GATNNNNATC 1 cut(s) 991
BseLI CCNNNNNNNGG 3 cut(s) 568, 919, 1051
BseMI GCAATG 1 cut(s) 187
BseMII CTCAG 2 cut(s) 968, 987
BseNI ACTGG 1 cut(s) 127
BsePI GCGCGC 1 cut(s) 188
BseRI GAGGAG 3 cut(s) 300, 614, 935
BseSI GKGCMC 2 cut(s) 117, 840
BseXI GCAGC 3 cut(s) 17, 89, 212
Bsh1236I CGCG 5 cut(s) 86, 147, 188, 190, 783
Bsh1285I CGRYCG 1 cut(s) 541
BshFI GGCC 2 cut(s) 150, 838
BshNI GGYRCC 1 cut(s) 50
BshVI ATCGAT 1 cut(s) 541
BsiEI CGRYCG 1 cut(s) 541
BsiHKAI GWGCWC 1 cut(s) 117
BsiSI CCGG 4 cut(s) 48, 110, 376, 1040
BslFI GGGAC 1 cut(s) 774
BslI CCNNNNNNNGG 3 cut(s) 568, 919, 1051
BsmFI GGGAC 1 cut(s) 774
BsnI GGCC 2 cut(s) 150, 838
Bsp119I TTCGAA 1 cut(s) 386
Bsp120I GGGCCC 1 cut(s) 836
Bsp1286I GDGCHC 2 cut(s) 117, 840
Bsp13I TCCGGA 1 cut(s) 1039
Bsp143I GATC 8 cut(s) 538, 617, 701, 886, 925, 986, 1036, 1099
BspACI CCGC 6 cut(s) 72, 75, 131, 147, 177, 422
BspANI GGCC 2 cut(s) 150, 838
BspCNI CTCAG 2 cut(s) 967, 988
BspDI ATCGAT 1 cut(s) 541
BspEI TCCGGA 1 cut(s) 1039
BspFNI CGCG 5 cut(s) 86, 147, 188, 190, 783
BspLI GGNNCC 4 cut(s) 52, 838, 839, 1044
BspPI GGATC 3 cut(s) 625, 933, 1031
BspQI GCTCTTC 1 cut(s) 965
BspT104I TTCGAA 1 cut(s) 386
BspT107I GGYRCC 1 cut(s) 50
BsrDI GCAATG 1 cut(s) 187
BsrI ACTGG 1 cut(s) 127
BssECI CCNNGG 1 cut(s) 333
BssHII GCGCGC 1 cut(s) 188
BssMI GATC 8 cut(s) 538, 617, 701, 886, 925, 986, 1036, 1099
BssNI GRCGYC 1 cut(s) 51
Bst2UI CCWGG 1 cut(s) 196
Bst4CI ACNGT 2 cut(s) 94, 119
Bst6I CTCTTC 1 cut(s) 965
BstACI GRCGYC 1 cut(s) 51
BstAPI GCANNNNNTGC 1 cut(s) 222
BstBI TTCGAA 1 cut(s) 386
BstC8I GCNNGC 4 cut(s) 27, 128, 190, 937
BstDEI CTNAG 5 cut(s) 32, 162, 432, 954, 996
BstENI CCTNNNNNAGG 1 cut(s) 566
BstF5I GGATG 4 cut(s) 460, 619, 620, 1129
BstFNI CGCG 5 cut(s) 86, 147, 188, 190, 783
BstH2I RGCGCY 1 cut(s) 54
BstHHI GCGC 4 cut(s) 53, 88, 190, 192
BstKTI GATC 8 cut(s) 541, 620, 704, 889, 928, 989, 1039, 1102
BstMBI GATC 8 cut(s) 538, 617, 701, 886, 925, 986, 1036, 1099
BstMCI CGRYCG 1 cut(s) 541
BstMWI GCNNNNNNNGC 6 cut(s) 42, 57, 83, 222, 421, 869
BstNI CCWGG 1 cut(s) 196
BstNSI RCATGY 1 cut(s) 550
BstSCI CCNGG 2 cut(s) 108, 194
BstSFI CTRYAG 1 cut(s) 90
BstSLI GKGCMC 2 cut(s) 117, 840
BstUI CGCG 5 cut(s) 86, 147, 188, 190, 783
BstV1I GCAGC 3 cut(s) 17, 89, 212
BstX2I RGATCY 1 cut(s) 925
BstYI RGATCY 1 cut(s) 925
Bsu15I ATCGAT 1 cut(s) 541
BsuI GTATCC 1 cut(s) 732
BsuRI GGCC 2 cut(s) 150, 838
BsuTUI ATCGAT 1 cut(s) 541
BtsCI GGATG 4 cut(s) 460, 619, 620, 1129
BtsI GCAGTG 1 cut(s) 179
BtsIMutI CAGTG 2 cut(s) 179, 970
Cac8I GCNNGC 4 cut(s) 27, 128, 190, 937
CaiI CAGNNNCTG 1 cut(s) 995
CfoI GCGC 4 cut(s) 53, 88, 190, 192
Cfr13I GGNCC 4 cut(s) 815, 836, 837, 1042
ClaI ATCGAT 1 cut(s) 541
CseI GACGC 2 cut(s) 92, 1010
Csp6I GTAC 2 cut(s) 120, 648
CviAII CATG 5 cut(s) 213, 246, 257, 547, 855
CviQI GTAC 2 cut(s) 120, 648
DdeI CTNAG 5 cut(s) 32, 162, 432, 954, 996
DinI GGCGCC 1 cut(s) 52
DpnI GATC 8 cut(s) 540, 619, 703, 888, 927, 988, 1038, 1101
DpnII GATC 8 cut(s) 538, 617, 701, 886, 925, 986, 1036, 1099
DraIII CACNNNGTG 1 cut(s) 112
DriI GACNNNNNGTC 1 cut(s) 325
Eam1104I CTCTTC 1 cut(s) 965
Eam1105I GACNNNNNGTC 1 cut(s) 325
EarI CTCTTC 1 cut(s) 965
Eco24I GRGCYC 1 cut(s) 840
Eco47I GGWCC 2 cut(s) 815, 1042
Eco57I CTGAAG 5 cut(s) 687, 707, 758, 946, 950
EcoNI CCTNNNNNAGG 1 cut(s) 566
EcoO109I RGGNCCY 2 cut(s) 836, 837
EcoRI GAATTC 1 cut(s) 352
EcoRII CCWGG 1 cut(s) 194
EcoT38I GRGCYC 1 cut(s) 840
EgeI GGCGCC 1 cut(s) 52
EheI GGCGCC 1 cut(s) 52
FaeI CATG 5 cut(s) 216, 249, 260, 550, 858
FalI AAGNNNNNCTT 2 cut(s) 923, 955
FaqI GGGAC 1 cut(s) 774
FatI CATG 5 cut(s) 212, 245, 256, 546, 854
FbaI TGATCA 1 cut(s) 1099
Fnu4HI GCNGC 8 cut(s) 6, 9, 75, 78, 131, 148, 178, 226
FokI GGATG 4 cut(s) 467, 607, 626, 1136
FriOI GRGCYC 1 cut(s) 840
Fsp4HI GCNGC 8 cut(s) 6, 9, 75, 78, 131, 148, 178, 226
FspBI CTAG 2 cut(s) 645, 981
GlaI GCGC 4 cut(s) 52, 87, 189, 191
GluI GCNGC 8 cut(s) 6, 9, 75, 78, 131, 148, 178, 226
GsuI CTGGAG 2 cut(s) 25, 178
HaeII RGCGCY 1 cut(s) 54
HaeIII GGCC 2 cut(s) 150, 838
HapII CCGG 4 cut(s) 48, 110, 376, 1040
HgaI GACGC 2 cut(s) 92, 1010
HhaI GCGC 4 cut(s) 53, 88, 190, 192
Hin1I GRCGYC 1 cut(s) 51
Hin1II CATG 5 cut(s) 216, 249, 260, 550, 858
Hin6I GCGC 4 cut(s) 51, 86, 188, 190
HinP1I GCGC 4 cut(s) 51, 86, 188, 190
HincII GTYRAC 1 cut(s) 330
HindII GTYRAC 1 cut(s) 330
HindIII AAGCTT 2 cut(s) 531, 770
HinfI GANTC 3 cut(s) 209, 602, 992
HpaII CCGG 4 cut(s) 48, 110, 376, 1040
HphI GGTGA 3 cut(s) 333, 550, 896
Hpy166II GTNNAC 4 cut(s) 115, 330, 815, 968
Hpy188I TCNGA 6 cut(s) 731, 777, 930, 991, 997, 1113
Hpy188III TCNNGA 4 cut(s) 284, 681, 1040, 1103
Hpy8I GTNNAC 4 cut(s) 115, 330, 815, 968
Hpy99I CGWCG 1 cut(s) 86
HpyAV CCTTC 4 cut(s) 24, 152, 925, 1148
HpyCH4III ACNGT 2 cut(s) 94, 119
HpyCH4IV ACGT 1 cut(s) 555
HpyCH4V TGCA 7 cut(s) 115, 216, 275, 368, 415, 550, 1028
HpyF10VI GCNNNNNNNGC 6 cut(s) 42, 57, 83, 222, 421, 869
HpyF3I CTNAG 5 cut(s) 32, 162, 432, 954, 996
HpySE526I ACGT 1 cut(s) 555
Hsp92I GRCGYC 1 cut(s) 51
Hsp92II CATG 5 cut(s) 216, 249, 260, 550, 858
HspAI GCGC 4 cut(s) 51, 86, 188, 190
KasI GGCGCC 1 cut(s) 50
Kpn2I TCCGGA 1 cut(s) 1039
Ksp22I TGATCA 1 cut(s) 1099
Kzo9I GATC 8 cut(s) 538, 617, 701, 886, 925, 986, 1036, 1099
LguI GCTCTTC 1 cut(s) 965
LmnI GCTCC 3 cut(s) 16, 50, 197
Lsp1109I GCAGC 3 cut(s) 17, 89, 212
LweI GCATC 4 cut(s) 347, 377, 445, 1114
MaeI CTAG 2 cut(s) 645, 981
MaeII ACGT 1 cut(s) 555
MaeIII GTNAC 1 cut(s) 556
MalI GATC 8 cut(s) 540, 619, 703, 888, 927, 988, 1038, 1101
MboI GATC 8 cut(s) 538, 617, 701, 886, 925, 986, 1036, 1099
MboII GAAGA 4 cut(s) 668, 860, 952, 1027
MfeI CAATTG 1 cut(s) 606
MflI RGATCY 1 cut(s) 925
MhlI GDGCHC 2 cut(s) 117, 840
MluCI AATT 7 cut(s) 352, 391, 401, 606, 974, 1060, 1095
Mly113I GGCGCC 1 cut(s) 51
MlyI GAGTC 2 cut(s) 218, 611
MroI TCCGGA 1 cut(s) 1039
MseI TTAA 3 cut(s) 153, 468, 491
MslI CAYNNNNRTG 2 cut(s) 255, 518
MspA1I CMGCKG 1 cut(s) 8
MspI CCGG 4 cut(s) 48, 110, 376, 1040
MspR9I CCNGG 2 cut(s) 110, 196
MunI CAATTG 1 cut(s) 606
MvaI CCWGG 1 cut(s) 196
MvnI CGCG 5 cut(s) 86, 147, 188, 190, 783
MwoI GCNNNNNNNGC 6 cut(s) 42, 57, 83, 222, 421, 869
NarI GGCGCC 1 cut(s) 51
NciI CCSGG 1 cut(s) 110
NdeII GATC 8 cut(s) 538, 617, 701, 886, 925, 986, 1036, 1099
NlaIII CATG 5 cut(s) 216, 249, 260, 550, 858
NlaIV GGNNCC 4 cut(s) 52, 838, 839, 1044
NmuCI GTSAC 1 cut(s) 556
NspI RCATGY 1 cut(s) 550
NspV TTCGAA 1 cut(s) 386
PauI GCGCGC 1 cut(s) 188
PciSI GCTCTTC 1 cut(s) 965
PfeI GAWTC 1 cut(s) 992
PkrI GCNGC 8 cut(s) 7, 10, 76, 79, 132, 149, 179, 227
Ple19I CGATCG 1 cut(s) 541
PleI GAGTC 2 cut(s) 217, 610
PluTI GGCGCC 1 cut(s) 54
PpsI GAGTC 2 cut(s) 217, 610
PshBI ATTAAT 1 cut(s) 468
Psp6I CCWGG 1 cut(s) 194
PspGI CCWGG 1 cut(s) 194
PspN4I GGNNCC 4 cut(s) 52, 838, 839, 1044
PspOMI GGGCCC 1 cut(s) 836
PspPI GGNCC 4 cut(s) 815, 836, 837, 1042
PstNI CAGNNNCTG 1 cut(s) 995
PsuI RGATCY 1 cut(s) 925
PteI GCGCGC 1 cut(s) 188
PvuI CGATCG 1 cut(s) 541
PvuII CAGCTG 1 cut(s) 8
RsaI GTAC 2 cut(s) 121, 649
RsaNI GTAC 2 cut(s) 120, 648
RseI CAYNNNNRTG 2 cut(s) 255, 518
SapI GCTCTTC 1 cut(s) 965
SaqAI TTAA 3 cut(s) 153, 468, 491
SatI GCNGC 8 cut(s) 6, 9, 75, 78, 131, 148, 178, 226
Sau3AI GATC 8 cut(s) 538, 617, 701, 886, 925, 986, 1036, 1099
Sau96I GGNCC 4 cut(s) 815, 836, 837, 1042
ScaI AGTACT 1 cut(s) 649
SchI GAGTC 2 cut(s) 218, 611
ScrFI CCNGG 2 cut(s) 110, 196
SduI GDGCHC 2 cut(s) 117, 840
SfaNI GCATC 4 cut(s) 347, 377, 445, 1114
SfcI CTRYAG 1 cut(s) 90
SfoI GGCGCC 1 cut(s) 52
SfuI TTCGAA 1 cut(s) 386
SinI GGWCC 2 cut(s) 815, 1042
SmiMI CAYNNNNRTG 2 cut(s) 255, 518
SmlI CTYRAG 1 cut(s) 1142
SmoI CTYRAG 1 cut(s) 1142
SpeI ACTAGT 2 cut(s) 644, 980
Sse9I AATT 7 cut(s) 352, 391, 401, 606, 974, 1060, 1095
SsiI CCGC 6 cut(s) 72, 75, 131, 147, 177, 422
SspDI GGCGCC 1 cut(s) 50
SspMI CTAG 2 cut(s) 645, 981
StyD4I CCNGG 2 cut(s) 108, 194
TaaI ACNGT 2 cut(s) 94, 119
TaiI ACGT 1 cut(s) 558
TaqI TCGA 3 cut(s) 386, 537, 541
TasI AATT 7 cut(s) 352, 391, 401, 606, 974, 1060, 1095
TatI WGTACW 1 cut(s) 647
TauI GCSGC 4 cut(s) 77, 133, 150, 180
TfiI GAWTC 1 cut(s) 992
Tru1I TTAA 3 cut(s) 153, 468, 491
Tru9I TTAA 3 cut(s) 153, 468, 491
TscAI CASTG 2 cut(s) 179, 970
TseFI GTSAC 1 cut(s) 556
TseI GCWGC 4 cut(s) 5, 8, 77, 225
Tsp45I GTSAC 1 cut(s) 556
TspDTI ATGAA 4 cut(s) 245, 486, 543, 675
TspGWI ACGGA 1 cut(s) 611
TspRI CASTG 2 cut(s) 179, 970
VneI GTGCAC 1 cut(s) 113
VpaK11BI GGWCC 2 cut(s) 815, 1042
VspI ATTAAT 1 cut(s) 468
XagI CCTNNNNNAGG 1 cut(s) 566
XapI RAATTY 1 cut(s) 352
XceI RCATGY 1 cut(s) 550
XspI CTAG 2 cut(s) 645, 981
ZrmI AGTACT 1 cut(s) 649
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.