No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G32730 |
| fragaria_vesca | FvH4_5g20870 |
| malus_domestica | MD06G1043400.v1.1 MD16G1267400.v1.1 |
| prunus_persica | Prupe.5G050200_v2.0.a1 |
| pyrus_communis | pycom06g03630 pycom06g03640 pycom16g23690 |
| rosa_chinensis | RchiOBHm_Chr7g0207891 |
| rosa_laevigata | RLG00000003278 |
| rosa_multiflora | Rmu_co7991772.1_g000001 Rmu_sc0006577.1_g000002 Rmu_ssc0000451.1_g000023 |
| rosa_roxburghii | Rroxscaffold_3G00251070 |
| rosa_rugosa | Rorug07G0100100 |
| rosa_samantha | Rh2CG132500 Rh7AG233300 Rh7AG233400 Rh7BG229000 Rh7CG248700 Rh7DG239400 |
| rosa_wichuraiana | Rw7G020030 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 50 |
| AccII | CGCG | 5 cut(s) | 86, 147, 188, 190, 783 |
| AccIII | TCCGGA | 1 cut(s) | 1039 |
| AciI | CCGC | 6 cut(s) | 72, 75, 131, 147, 177, 422 |
| AclWI | GGATC | 3 cut(s) | 625, 933, 1031 |
| AcsI | RAATTY | 1 cut(s) | 352 |
| AcuI | CTGAAG | 5 cut(s) | 687, 707, 758, 946, 950 |
| AcyI | GRCGYC | 1 cut(s) | 51 |
| AdeI | CACNNNGTG | 1 cut(s) | 112 |
| AfaI | GTAC | 2 cut(s) | 121, 649 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 568, 919, 1051 |
| AgsI | TTSAA | 5 cut(s) | 265, 406, 518, 694, 949 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 325 |
| AhlI | ACTAGT | 2 cut(s) | 644, 980 |
| AjnI | CCWGG | 1 cut(s) | 194 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 923, 955 |
| AluBI | AGCT | 8 cut(s) | 8, 45, 236, 533, 671, 772, 901, 958 |
| AluI | AGCT | 8 cut(s) | 8, 45, 236, 533, 671, 772, 901, 958 |
| Alw21I | GWGCWC | 1 cut(s) | 117 |
| Alw44I | GTGCAC | 1 cut(s) | 113 |
| AlwI | GGATC | 3 cut(s) | 625, 933, 1031 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 995 |
| Aor13HI | TCCGGA | 1 cut(s) | 1039 |
| AoxI | GGCC | 2 cut(s) | 148, 836 |
| ApaI | GGGCCC | 1 cut(s) | 840 |
| ApaLI | GTGCAC | 1 cut(s) | 113 |
| ApeKI | GCWGC | 4 cut(s) | 5, 8, 77, 225 |
| ApoI | RAATTY | 1 cut(s) | 352 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 232, 264 |
| AseI | ATTAAT | 1 cut(s) | 468 |
| AspLEI | GCGC | 4 cut(s) | 53, 88, 190, 192 |
| AspS9I | GGNCC | 4 cut(s) | 815, 836, 837, 1042 |
| AsuC2I | CCSGG | 1 cut(s) | 110 |
| AsuHPI | GGTGA | 3 cut(s) | 333, 550, 896 |
| AsuII | TTCGAA | 1 cut(s) | 386 |
| AvaII | GGWCC | 2 cut(s) | 815, 1042 |
| BaeGI | GKGCMC | 2 cut(s) | 117, 840 |
| BanI | GGYRCC | 1 cut(s) | 50 |
| BanII | GRGCYC | 1 cut(s) | 840 |
| Bbv12I | GWGCWC | 1 cut(s) | 117 |
| BbvI | GCAGC | 3 cut(s) | 17, 89, 212 |
| BccI | CCATC | 3 cut(s) | 330, 352, 608 |
| BciT130I | CCWGG | 1 cut(s) | 196 |
| BciVI | GTATCC | 1 cut(s) | 732 |
| BclI | TGATCA | 1 cut(s) | 1099 |
| BcnI | CCSGG | 1 cut(s) | 110 |
| BcuI | ACTAGT | 2 cut(s) | 644, 980 |
| BfaI | CTAG | 2 cut(s) | 645, 981 |
| BfmI | CTRYAG | 1 cut(s) | 90 |
| BfoI | RGCGCY | 1 cut(s) | 54 |
| BfuI | GTATCC | 1 cut(s) | 732 |
| BisI | GCNGC | 8 cut(s) | 6, 9, 75, 78, 131, 148, 178, 226 |
| BlsI | GCNGC | 8 cut(s) | 7, 10, 76, 79, 132, 149, 179, 227 |
| BmcAI | AGTACT | 1 cut(s) | 649 |
| Bme1390I | CCNGG | 2 cut(s) | 110, 196 |
| Bme18I | GGWCC | 2 cut(s) | 815, 1042 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 325 |
| BmgT120I | GGNCC | 4 cut(s) | 815, 836, 837, 1042 |
| BmiI | GGNNCC | 4 cut(s) | 52, 838, 839, 1044 |
| BmrFI | CCNGG | 2 cut(s) | 110, 196 |
| BmsI | GCATC | 4 cut(s) | 347, 377, 445, 1114 |
| BpmI | CTGGAG | 2 cut(s) | 25, 178 |
| Bpu10I | CCTNAGC | 1 cut(s) | 32 |
| Bpu14I | TTCGAA | 1 cut(s) | 386 |
| BpuEI | CTTGAG | 1 cut(s) | 1163 |
| BpuMI | CCSGG | 1 cut(s) | 110 |
| Bsa29I | ATCGAT | 1 cut(s) | 541 |
| BsaBI | GATNNNNATC | 1 cut(s) | 991 |
| BsaHI | GRCGYC | 1 cut(s) | 51 |
| BsaJI | CCNNGG | 1 cut(s) | 333 |
| BsaWI | WCCGGW | 1 cut(s) | 1039 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 29, 59 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 568, 919, 1051 |
| Bse1I | ACTGG | 1 cut(s) | 127 |
| Bse3DI | GCAATG | 1 cut(s) | 187 |
| Bse8I | GATNNNNATC | 1 cut(s) | 991 |
| BseAI | TCCGGA | 1 cut(s) | 1039 |
| BseBI | CCWGG | 1 cut(s) | 196 |
| BseCI | ATCGAT | 1 cut(s) | 541 |
| BseDI | CCNNGG | 1 cut(s) | 333 |
| BseGI | GGATG | 4 cut(s) | 460, 619, 620, 1129 |
| BseJI | GATNNNNATC | 1 cut(s) | 991 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 568, 919, 1051 |
| BseMI | GCAATG | 1 cut(s) | 187 |
| BseMII | CTCAG | 2 cut(s) | 968, 987 |
| BseNI | ACTGG | 1 cut(s) | 127 |
| BsePI | GCGCGC | 1 cut(s) | 188 |
| BseRI | GAGGAG | 3 cut(s) | 300, 614, 935 |
| BseSI | GKGCMC | 2 cut(s) | 117, 840 |
| BseXI | GCAGC | 3 cut(s) | 17, 89, 212 |
| Bsh1236I | CGCG | 5 cut(s) | 86, 147, 188, 190, 783 |
| Bsh1285I | CGRYCG | 1 cut(s) | 541 |
| BshFI | GGCC | 2 cut(s) | 150, 838 |
| BshNI | GGYRCC | 1 cut(s) | 50 |
| BshVI | ATCGAT | 1 cut(s) | 541 |
| BsiEI | CGRYCG | 1 cut(s) | 541 |
| BsiHKAI | GWGCWC | 1 cut(s) | 117 |
| BsiSI | CCGG | 4 cut(s) | 48, 110, 376, 1040 |
| BslFI | GGGAC | 1 cut(s) | 774 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 568, 919, 1051 |
| BsmFI | GGGAC | 1 cut(s) | 774 |
| BsnI | GGCC | 2 cut(s) | 150, 838 |
| Bsp119I | TTCGAA | 1 cut(s) | 386 |
| Bsp120I | GGGCCC | 1 cut(s) | 836 |
| Bsp1286I | GDGCHC | 2 cut(s) | 117, 840 |
| Bsp13I | TCCGGA | 1 cut(s) | 1039 |
| Bsp143I | GATC | 8 cut(s) | 538, 617, 701, 886, 925, 986, 1036, 1099 |
| BspACI | CCGC | 6 cut(s) | 72, 75, 131, 147, 177, 422 |
| BspANI | GGCC | 2 cut(s) | 150, 838 |
| BspCNI | CTCAG | 2 cut(s) | 967, 988 |
| BspDI | ATCGAT | 1 cut(s) | 541 |
| BspEI | TCCGGA | 1 cut(s) | 1039 |
| BspFNI | CGCG | 5 cut(s) | 86, 147, 188, 190, 783 |
| BspLI | GGNNCC | 4 cut(s) | 52, 838, 839, 1044 |
| BspPI | GGATC | 3 cut(s) | 625, 933, 1031 |
| BspQI | GCTCTTC | 1 cut(s) | 965 |
| BspT104I | TTCGAA | 1 cut(s) | 386 |
| BspT107I | GGYRCC | 1 cut(s) | 50 |
| BsrDI | GCAATG | 1 cut(s) | 187 |
| BsrI | ACTGG | 1 cut(s) | 127 |
| BssECI | CCNNGG | 1 cut(s) | 333 |
| BssHII | GCGCGC | 1 cut(s) | 188 |
| BssMI | GATC | 8 cut(s) | 538, 617, 701, 886, 925, 986, 1036, 1099 |
| BssNI | GRCGYC | 1 cut(s) | 51 |
| Bst2UI | CCWGG | 1 cut(s) | 196 |
| Bst4CI | ACNGT | 2 cut(s) | 94, 119 |
| Bst6I | CTCTTC | 1 cut(s) | 965 |
| BstACI | GRCGYC | 1 cut(s) | 51 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 222 |
| BstBI | TTCGAA | 1 cut(s) | 386 |
| BstC8I | GCNNGC | 4 cut(s) | 27, 128, 190, 937 |
| BstDEI | CTNAG | 5 cut(s) | 32, 162, 432, 954, 996 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 566 |
| BstF5I | GGATG | 4 cut(s) | 460, 619, 620, 1129 |
| BstFNI | CGCG | 5 cut(s) | 86, 147, 188, 190, 783 |
| BstH2I | RGCGCY | 1 cut(s) | 54 |
| BstHHI | GCGC | 4 cut(s) | 53, 88, 190, 192 |
| BstKTI | GATC | 8 cut(s) | 541, 620, 704, 889, 928, 989, 1039, 1102 |
| BstMBI | GATC | 8 cut(s) | 538, 617, 701, 886, 925, 986, 1036, 1099 |
| BstMCI | CGRYCG | 1 cut(s) | 541 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 42, 57, 83, 222, 421, 869 |
| BstNI | CCWGG | 1 cut(s) | 196 |
| BstNSI | RCATGY | 1 cut(s) | 550 |
| BstSCI | CCNGG | 2 cut(s) | 108, 194 |
| BstSFI | CTRYAG | 1 cut(s) | 90 |
| BstSLI | GKGCMC | 2 cut(s) | 117, 840 |
| BstUI | CGCG | 5 cut(s) | 86, 147, 188, 190, 783 |
| BstV1I | GCAGC | 3 cut(s) | 17, 89, 212 |
| BstX2I | RGATCY | 1 cut(s) | 925 |
| BstYI | RGATCY | 1 cut(s) | 925 |
| Bsu15I | ATCGAT | 1 cut(s) | 541 |
| BsuI | GTATCC | 1 cut(s) | 732 |
| BsuRI | GGCC | 2 cut(s) | 150, 838 |
| BsuTUI | ATCGAT | 1 cut(s) | 541 |
| BtsCI | GGATG | 4 cut(s) | 460, 619, 620, 1129 |
| BtsI | GCAGTG | 1 cut(s) | 179 |
| BtsIMutI | CAGTG | 2 cut(s) | 179, 970 |
| Cac8I | GCNNGC | 4 cut(s) | 27, 128, 190, 937 |
| CaiI | CAGNNNCTG | 1 cut(s) | 995 |
| CfoI | GCGC | 4 cut(s) | 53, 88, 190, 192 |
| Cfr13I | GGNCC | 4 cut(s) | 815, 836, 837, 1042 |
| ClaI | ATCGAT | 1 cut(s) | 541 |
| CseI | GACGC | 2 cut(s) | 92, 1010 |
| Csp6I | GTAC | 2 cut(s) | 120, 648 |
| CviAII | CATG | 5 cut(s) | 213, 246, 257, 547, 855 |
| CviQI | GTAC | 2 cut(s) | 120, 648 |
| DdeI | CTNAG | 5 cut(s) | 32, 162, 432, 954, 996 |
| DinI | GGCGCC | 1 cut(s) | 52 |
| DpnI | GATC | 8 cut(s) | 540, 619, 703, 888, 927, 988, 1038, 1101 |
| DpnII | GATC | 8 cut(s) | 538, 617, 701, 886, 925, 986, 1036, 1099 |
| DraIII | CACNNNGTG | 1 cut(s) | 112 |
| DriI | GACNNNNNGTC | 1 cut(s) | 325 |
| Eam1104I | CTCTTC | 1 cut(s) | 965 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 325 |
| EarI | CTCTTC | 1 cut(s) | 965 |
| Eco24I | GRGCYC | 1 cut(s) | 840 |
| Eco47I | GGWCC | 2 cut(s) | 815, 1042 |
| Eco57I | CTGAAG | 5 cut(s) | 687, 707, 758, 946, 950 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 566 |
| EcoO109I | RGGNCCY | 2 cut(s) | 836, 837 |
| EcoRI | GAATTC | 1 cut(s) | 352 |
| EcoRII | CCWGG | 1 cut(s) | 194 |
| EcoT38I | GRGCYC | 1 cut(s) | 840 |
| EgeI | GGCGCC | 1 cut(s) | 52 |
| EheI | GGCGCC | 1 cut(s) | 52 |
| FaeI | CATG | 5 cut(s) | 216, 249, 260, 550, 858 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 923, 955 |
| FaqI | GGGAC | 1 cut(s) | 774 |
| FatI | CATG | 5 cut(s) | 212, 245, 256, 546, 854 |
| FbaI | TGATCA | 1 cut(s) | 1099 |
| Fnu4HI | GCNGC | 8 cut(s) | 6, 9, 75, 78, 131, 148, 178, 226 |
| FokI | GGATG | 4 cut(s) | 467, 607, 626, 1136 |
| FriOI | GRGCYC | 1 cut(s) | 840 |
| Fsp4HI | GCNGC | 8 cut(s) | 6, 9, 75, 78, 131, 148, 178, 226 |
| FspBI | CTAG | 2 cut(s) | 645, 981 |
| GlaI | GCGC | 4 cut(s) | 52, 87, 189, 191 |
| GluI | GCNGC | 8 cut(s) | 6, 9, 75, 78, 131, 148, 178, 226 |
| GsuI | CTGGAG | 2 cut(s) | 25, 178 |
| HaeII | RGCGCY | 1 cut(s) | 54 |
| HaeIII | GGCC | 2 cut(s) | 150, 838 |
| HapII | CCGG | 4 cut(s) | 48, 110, 376, 1040 |
| HgaI | GACGC | 2 cut(s) | 92, 1010 |
| HhaI | GCGC | 4 cut(s) | 53, 88, 190, 192 |
| Hin1I | GRCGYC | 1 cut(s) | 51 |
| Hin1II | CATG | 5 cut(s) | 216, 249, 260, 550, 858 |
| Hin6I | GCGC | 4 cut(s) | 51, 86, 188, 190 |
| HinP1I | GCGC | 4 cut(s) | 51, 86, 188, 190 |
| HincII | GTYRAC | 1 cut(s) | 330 |
| HindII | GTYRAC | 1 cut(s) | 330 |
| HindIII | AAGCTT | 2 cut(s) | 531, 770 |
| HinfI | GANTC | 3 cut(s) | 209, 602, 992 |
| HpaII | CCGG | 4 cut(s) | 48, 110, 376, 1040 |
| HphI | GGTGA | 3 cut(s) | 333, 550, 896 |
| Hpy166II | GTNNAC | 4 cut(s) | 115, 330, 815, 968 |
| Hpy188I | TCNGA | 6 cut(s) | 731, 777, 930, 991, 997, 1113 |
| Hpy188III | TCNNGA | 4 cut(s) | 284, 681, 1040, 1103 |
| Hpy8I | GTNNAC | 4 cut(s) | 115, 330, 815, 968 |
| Hpy99I | CGWCG | 1 cut(s) | 86 |
| HpyAV | CCTTC | 4 cut(s) | 24, 152, 925, 1148 |
| HpyCH4III | ACNGT | 2 cut(s) | 94, 119 |
| HpyCH4IV | ACGT | 1 cut(s) | 555 |
| HpyCH4V | TGCA | 7 cut(s) | 115, 216, 275, 368, 415, 550, 1028 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 42, 57, 83, 222, 421, 869 |
| HpyF3I | CTNAG | 5 cut(s) | 32, 162, 432, 954, 996 |
| HpySE526I | ACGT | 1 cut(s) | 555 |
| Hsp92I | GRCGYC | 1 cut(s) | 51 |
| Hsp92II | CATG | 5 cut(s) | 216, 249, 260, 550, 858 |
| HspAI | GCGC | 4 cut(s) | 51, 86, 188, 190 |
| KasI | GGCGCC | 1 cut(s) | 50 |
| Kpn2I | TCCGGA | 1 cut(s) | 1039 |
| Ksp22I | TGATCA | 1 cut(s) | 1099 |
| Kzo9I | GATC | 8 cut(s) | 538, 617, 701, 886, 925, 986, 1036, 1099 |
| LguI | GCTCTTC | 1 cut(s) | 965 |
| LmnI | GCTCC | 3 cut(s) | 16, 50, 197 |
| Lsp1109I | GCAGC | 3 cut(s) | 17, 89, 212 |
| LweI | GCATC | 4 cut(s) | 347, 377, 445, 1114 |
| MaeI | CTAG | 2 cut(s) | 645, 981 |
| MaeII | ACGT | 1 cut(s) | 555 |
| MaeIII | GTNAC | 1 cut(s) | 556 |
| MalI | GATC | 8 cut(s) | 540, 619, 703, 888, 927, 988, 1038, 1101 |
| MboI | GATC | 8 cut(s) | 538, 617, 701, 886, 925, 986, 1036, 1099 |
| MboII | GAAGA | 4 cut(s) | 668, 860, 952, 1027 |
| MfeI | CAATTG | 1 cut(s) | 606 |
| MflI | RGATCY | 1 cut(s) | 925 |
| MhlI | GDGCHC | 2 cut(s) | 117, 840 |
| MluCI | AATT | 7 cut(s) | 352, 391, 401, 606, 974, 1060, 1095 |
| Mly113I | GGCGCC | 1 cut(s) | 51 |
| MlyI | GAGTC | 2 cut(s) | 218, 611 |
| MroI | TCCGGA | 1 cut(s) | 1039 |
| MseI | TTAA | 3 cut(s) | 153, 468, 491 |
| MslI | CAYNNNNRTG | 2 cut(s) | 255, 518 |
| MspA1I | CMGCKG | 1 cut(s) | 8 |
| MspI | CCGG | 4 cut(s) | 48, 110, 376, 1040 |
| MspR9I | CCNGG | 2 cut(s) | 110, 196 |
| MunI | CAATTG | 1 cut(s) | 606 |
| MvaI | CCWGG | 1 cut(s) | 196 |
| MvnI | CGCG | 5 cut(s) | 86, 147, 188, 190, 783 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 42, 57, 83, 222, 421, 869 |
| NarI | GGCGCC | 1 cut(s) | 51 |
| NciI | CCSGG | 1 cut(s) | 110 |
| NdeII | GATC | 8 cut(s) | 538, 617, 701, 886, 925, 986, 1036, 1099 |
| NlaIII | CATG | 5 cut(s) | 216, 249, 260, 550, 858 |
| NlaIV | GGNNCC | 4 cut(s) | 52, 838, 839, 1044 |
| NmuCI | GTSAC | 1 cut(s) | 556 |
| NspI | RCATGY | 1 cut(s) | 550 |
| NspV | TTCGAA | 1 cut(s) | 386 |
| PauI | GCGCGC | 1 cut(s) | 188 |
| PciSI | GCTCTTC | 1 cut(s) | 965 |
| PfeI | GAWTC | 1 cut(s) | 992 |
| PkrI | GCNGC | 8 cut(s) | 7, 10, 76, 79, 132, 149, 179, 227 |
| Ple19I | CGATCG | 1 cut(s) | 541 |
| PleI | GAGTC | 2 cut(s) | 217, 610 |
| PluTI | GGCGCC | 1 cut(s) | 54 |
| PpsI | GAGTC | 2 cut(s) | 217, 610 |
| PshBI | ATTAAT | 1 cut(s) | 468 |
| Psp6I | CCWGG | 1 cut(s) | 194 |
| PspGI | CCWGG | 1 cut(s) | 194 |
| PspN4I | GGNNCC | 4 cut(s) | 52, 838, 839, 1044 |
| PspOMI | GGGCCC | 1 cut(s) | 836 |
| PspPI | GGNCC | 4 cut(s) | 815, 836, 837, 1042 |
| PstNI | CAGNNNCTG | 1 cut(s) | 995 |
| PsuI | RGATCY | 1 cut(s) | 925 |
| PteI | GCGCGC | 1 cut(s) | 188 |
| PvuI | CGATCG | 1 cut(s) | 541 |
| PvuII | CAGCTG | 1 cut(s) | 8 |
| RsaI | GTAC | 2 cut(s) | 121, 649 |
| RsaNI | GTAC | 2 cut(s) | 120, 648 |
| RseI | CAYNNNNRTG | 2 cut(s) | 255, 518 |
| SapI | GCTCTTC | 1 cut(s) | 965 |
| SaqAI | TTAA | 3 cut(s) | 153, 468, 491 |
| SatI | GCNGC | 8 cut(s) | 6, 9, 75, 78, 131, 148, 178, 226 |
| Sau3AI | GATC | 8 cut(s) | 538, 617, 701, 886, 925, 986, 1036, 1099 |
| Sau96I | GGNCC | 4 cut(s) | 815, 836, 837, 1042 |
| ScaI | AGTACT | 1 cut(s) | 649 |
| SchI | GAGTC | 2 cut(s) | 218, 611 |
| ScrFI | CCNGG | 2 cut(s) | 110, 196 |
| SduI | GDGCHC | 2 cut(s) | 117, 840 |
| SfaNI | GCATC | 4 cut(s) | 347, 377, 445, 1114 |
| SfcI | CTRYAG | 1 cut(s) | 90 |
| SfoI | GGCGCC | 1 cut(s) | 52 |
| SfuI | TTCGAA | 1 cut(s) | 386 |
| SinI | GGWCC | 2 cut(s) | 815, 1042 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 255, 518 |
| SmlI | CTYRAG | 1 cut(s) | 1142 |
| SmoI | CTYRAG | 1 cut(s) | 1142 |
| SpeI | ACTAGT | 2 cut(s) | 644, 980 |
| Sse9I | AATT | 7 cut(s) | 352, 391, 401, 606, 974, 1060, 1095 |
| SsiI | CCGC | 6 cut(s) | 72, 75, 131, 147, 177, 422 |
| SspDI | GGCGCC | 1 cut(s) | 50 |
| SspMI | CTAG | 2 cut(s) | 645, 981 |
| StyD4I | CCNGG | 2 cut(s) | 108, 194 |
| TaaI | ACNGT | 2 cut(s) | 94, 119 |
| TaiI | ACGT | 1 cut(s) | 558 |
| TaqI | TCGA | 3 cut(s) | 386, 537, 541 |
| TasI | AATT | 7 cut(s) | 352, 391, 401, 606, 974, 1060, 1095 |
| TatI | WGTACW | 1 cut(s) | 647 |
| TauI | GCSGC | 4 cut(s) | 77, 133, 150, 180 |
| TfiI | GAWTC | 1 cut(s) | 992 |
| Tru1I | TTAA | 3 cut(s) | 153, 468, 491 |
| Tru9I | TTAA | 3 cut(s) | 153, 468, 491 |
| TscAI | CASTG | 2 cut(s) | 179, 970 |
| TseFI | GTSAC | 1 cut(s) | 556 |
| TseI | GCWGC | 4 cut(s) | 5, 8, 77, 225 |
| Tsp45I | GTSAC | 1 cut(s) | 556 |
| TspDTI | ATGAA | 4 cut(s) | 245, 486, 543, 675 |
| TspGWI | ACGGA | 1 cut(s) | 611 |
| TspRI | CASTG | 2 cut(s) | 179, 970 |
| VneI | GTGCAC | 1 cut(s) | 113 |
| VpaK11BI | GGWCC | 2 cut(s) | 815, 1042 |
| VspI | ATTAAT | 1 cut(s) | 468 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 566 |
| XapI | RAATTY | 1 cut(s) | 352 |
| XceI | RCATGY | 1 cut(s) | 550 |
| XspI | CTAG | 2 cut(s) | 645, 981 |
| ZrmI | AGTACT | 1 cut(s) | 649 |