Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co7991772.1

Orthogroup ID

OG0009547

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 521

Gene Structure 521 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co7991772.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 455 bp

aacatcagcttattagaggaagtgttttctgtgaactctaatgcagaagagtccatcggggatggatcatccatatcaaaccatgacatgactactacagaaggtgacaatggggatatggtctcagggttgaagttaaagttgagatcaaatccaatgagaaccagtaatttcagaaagaggatacagcaaattgttgatcagggattaaagaagcttaaaacatgtgagtctgctgatggagataaggaaccgagtgaccaaattgaattggatatggggcccagaaaaggagaaaattggcgggctgcaagggcttcagctttaggtgatctcattgataagttgaacaaagcccgaaatgaggaggatctacagtcttgcatggagatgaagactcaactcttcaatgaactgaaatctatgagcagctcagaattggaagacacagagac

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF702

Protein Analysis

152

Amino Acids

16.9

Weight (kDa)

4.71

Isoelectric Point (pI)

44.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009547)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32730
fragaria_vesca	FvH4_5g20870
malus_domestica	MD06G1043400.v1.1 MD16G1267400.v1.1
prunus_persica	Prupe.5G050200_v2.0.a1
pyrus_communis	pycom06g03630 pycom06g03640 pycom16g23690
rosa_chinensis	RchiOBHm_Chr7g0207891
rosa_laevigata	RLG00000003278
rosa_multiflora	Rmu_co7991772.1_g000001 Rmu_sc0006577.1_g000002 Rmu_ssc0000451.1_g000023
rosa_roxburghii	Rroxscaffold_3G00251070
rosa_rugosa	Rorug07G0100100
rosa_samantha	Rh2CG132500 Rh7AG233300 Rh7AG233400 Rh7BG229000 Rh7CG248700 Rh7DG239400
rosa_wichuraiana	Rw7G020030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	304
AclWI	GGATC	2 cut(s)	73, 378
AcuI	CTGAAG	1 cut(s)	303
AfiI	CCNNNNNNNGG	2 cut(s)	290, 364
AflIII	ACRYGT	1 cut(s)	224
AgsI	TTSAA	4 cut(s)	133, 269, 349, 409
AluBI	AGCT	4 cut(s)	9, 217, 323, 432
AluI	AGCT	4 cut(s)	9, 217, 323, 432
Alw26I	GTCTC	2 cut(s)	127, 446
AlwI	GGATC	2 cut(s)	73, 378
AoxI	GGCC	1 cut(s)	281
ApaI	GGGCCC	1 cut(s)	285
ApeKI	GCWGC	2 cut(s)	308, 429
AspS9I	GGNCC	2 cut(s)	281, 282
AsuHPI	GGTGA	2 cut(s)	116, 341
BaeGI	GKGCMC	1 cut(s)	285
BanII	GRGCYC	1 cut(s)	285
BbsI	GAAGAC	2 cut(s)	401, 450
BbvI	GCAGC	2 cut(s)	295, 441
BccI	CCATC	3 cut(s)	56, 62, 233
BciVI	GTATCC	1 cut(s)	177
BclI	TGATCA	1 cut(s)	199
BcoDI	GTCTC	2 cut(s)	127, 446
BfmI	CTRYAG	2 cut(s)	96, 374
BfuI	GTATCC	1 cut(s)	177
BisI	GCNGC	2 cut(s)	309, 430
BlsI	GCNGC	2 cut(s)	310, 431
BmgT120I	GGNCC	2 cut(s)	281, 282
BmiI	GGNNCC	3 cut(s)	252, 282, 283
BpiI	GAAGAC	2 cut(s)	401, 450
BsaI	GGTCTC	1 cut(s)	127
Bsc4I	CCNNNNNNNGG	2 cut(s)	290, 364
Bse1I	ACTGG	1 cut(s)	165
BseGI	GGATG	2 cut(s)	67, 68
BseLI	CCNNNNNNNGG	2 cut(s)	290, 364
BseMII	CTCAG	2 cut(s)	138, 447
BseNI	ACTGG	1 cut(s)	165
BseRI	GAGGAG	1 cut(s)	380
BseSI	GKGCMC	1 cut(s)	285
BseXI	GCAGC	2 cut(s)	295, 441
BshFI	GGCC	1 cut(s)	283
BslI	CCNNNNNNNGG	2 cut(s)	290, 364
BsmAI	GTCTC	2 cut(s)	127, 446
BsnI	GGCC	1 cut(s)	283
Bso31I	GGTCTC	1 cut(s)	127
Bsp120I	GGGCCC	1 cut(s)	281
Bsp1286I	GDGCHC	1 cut(s)	285
Bsp143I	GATC	5 cut(s)	65, 146, 199, 331, 370
BspACI	CCGC	1 cut(s)	304
BspANI	GGCC	1 cut(s)	283
BspCNI	CTCAG	2 cut(s)	137, 446
BspLI	GGNNCC	3 cut(s)	252, 282, 283
BspPI	GGATC	2 cut(s)	73, 378
BspTNI	GGTCTC	1 cut(s)	127
BsrI	ACTGG	1 cut(s)	165
BssMI	GATC	5 cut(s)	65, 146, 199, 331, 370
Bst4CI	ACNGT	1 cut(s)	378
Bst6I	CTCTTC	2 cut(s)	42, 410
BstC8I	GCNNGC	1 cut(s)	306
BstDEI	CTNAG	2 cut(s)	124, 433
BstF5I	GGATG	2 cut(s)	67, 68
BstKTI	GATC	5 cut(s)	68, 149, 202, 334, 373
BstMAI	GTCTC	2 cut(s)	127, 446
BstMBI	GATC	5 cut(s)	65, 146, 199, 331, 370
BstMWI	GCNNNNNNNGC	1 cut(s)	314
BstNSI	RCATGY	1 cut(s)	228
BstSFI	CTRYAG	2 cut(s)	96, 374
BstSLI	GKGCMC	1 cut(s)	285
BstV1I	GCAGC	2 cut(s)	295, 441
BstV2I	GAAGAC	2 cut(s)	401, 450
BstX2I	RGATCY	1 cut(s)	370
BstYI	RGATCY	1 cut(s)	370
BsuI	GTATCC	1 cut(s)	177
BsuRI	GGCC	1 cut(s)	283
BtsCI	GGATG	2 cut(s)	67, 68
Cac8I	GCNNGC	1 cut(s)	306
Cfr13I	GGNCC	2 cut(s)	281, 282
CviAII	CATG	4 cut(s)	83, 88, 225, 385
CviJI	RGCY	8 cut(s)	9, 217, 283, 308, 317, 323, 356, 432
CviKI_1	RGCY	8 cut(s)	9, 217, 283, 308, 317, 323, 356, 432
DdeI	CTNAG	2 cut(s)	124, 433
DpnI	GATC	5 cut(s)	67, 148, 201, 333, 372
DpnII	GATC	5 cut(s)	65, 146, 199, 331, 370
Eam1104I	CTCTTC	2 cut(s)	42, 410
EarI	CTCTTC	2 cut(s)	42, 410
Eco24I	GRGCYC	1 cut(s)	285
Eco31I	GGTCTC	1 cut(s)	127
Eco57I	CTGAAG	1 cut(s)	303
EcoO109I	RGGNCCY	1 cut(s)	281
EcoT38I	GRGCYC	1 cut(s)	285
FaeI	CATG	4 cut(s)	86, 91, 228, 388
FaiI	YATR	8 cut(s)	74, 84, 89, 119, 226, 278, 386, 425
FatI	CATG	4 cut(s)	82, 87, 224, 384
FauI	CCCGC	1 cut(s)	297
FbaI	TGATCA	1 cut(s)	199
Fnu4HI	GCNGC	2 cut(s)	309, 430
FokI	GGATG	2 cut(s)	55, 74
FriOI	GRGCYC	1 cut(s)	285
Fsp4HI	GCNGC	2 cut(s)	309, 430
GluI	GCNGC	2 cut(s)	309, 430
HaeIII	GGCC	1 cut(s)	283
Hin1II	CATG	4 cut(s)	86, 91, 228, 388
HindIII	AAGCTT	1 cut(s)	215
HinfI	GANTC	3 cut(s)	50, 230, 397
HphI	GGTGA	2 cut(s)	116, 341
Hpy166II	GTNNAC	1 cut(s)	34
Hpy188I	TCNGA	2 cut(s)	176, 436
Hpy8I	GTNNAC	1 cut(s)	34
HpyAV	CCTTC	1 cut(s)	95
HpyCH4III	ACNGT	1 cut(s)	378
HpyCH4V	TGCA	3 cut(s)	44, 311, 384
HpyF10VI	GCNNNNNNNGC	1 cut(s)	314
HpyF3I	CTNAG	2 cut(s)	124, 433
Hsp92II	CATG	4 cut(s)	86, 91, 228, 388
Ksp22I	TGATCA	1 cut(s)	199
Kzo9I	GATC	5 cut(s)	65, 146, 199, 331, 370
LpnPI	CCDG	4 cut(s)	111, 178, 188, 298
Lsp1109I	GCAGC	2 cut(s)	295, 441
MaeIII	GTNAC	2 cut(s)	104, 257
MalI	GATC	5 cut(s)	67, 148, 201, 333, 372
MboI	GATC	5 cut(s)	65, 146, 199, 331, 370
MboII	GAAGA	4 cut(s)	59, 397, 406, 455
MflI	RGATCY	1 cut(s)	370
MhlI	GDGCHC	1 cut(s)	285
MluCI	AATT	6 cut(s)	169, 192, 264, 269, 298, 437
MlyI	GAGTC	3 cut(s)	59, 239, 391
MnlI	CCTC	4 cut(s)	10, 174, 358, 361
MseI	TTAA	3 cut(s)	137, 209, 219
MslI	CAYNNNNRTG	1 cut(s)	389
MwoI	GCNNNNNNNGC	1 cut(s)	314
NdeII	GATC	5 cut(s)	65, 146, 199, 331, 370
NlaIII	CATG	4 cut(s)	86, 91, 228, 388
NlaIV	GGNNCC	3 cut(s)	252, 282, 283
NmuCI	GTSAC	2 cut(s)	104, 257
NspI	RCATGY	1 cut(s)	228
PciI	ACATGT	1 cut(s)	224
PkrI	GCNGC	2 cut(s)	310, 431
PleI	GAGTC	3 cut(s)	58, 238, 391
PpsI	GAGTC	3 cut(s)	58, 238, 391
PscI	ACATGT	1 cut(s)	224
PspN4I	GGNNCC	3 cut(s)	252, 282, 283
PspOMI	GGGCCC	1 cut(s)	281
PspPI	GGNCC	2 cut(s)	281, 282
PsuI	RGATCY	1 cut(s)	370
RseI	CAYNNNNRTG	1 cut(s)	389
SaqAI	TTAA	3 cut(s)	137, 209, 219
SatI	GCNGC	2 cut(s)	309, 430
Sau3AI	GATC	5 cut(s)	65, 146, 199, 331, 370
Sau96I	GGNCC	2 cut(s)	281, 282
SchI	GAGTC	3 cut(s)	59, 239, 391
SduI	GDGCHC	1 cut(s)	285
SetI	ASST	6 cut(s)	11, 106, 219, 325, 331, 434
SfcI	CTRYAG	2 cut(s)	96, 374
SmiMI	CAYNNNNRTG	1 cut(s)	389
Sse9I	AATT	6 cut(s)	169, 192, 264, 269, 298, 437
SsiI	CCGC	1 cut(s)	304
TaaI	ACNGT	1 cut(s)	378
TasI	AATT	6 cut(s)	169, 192, 264, 269, 298, 437
Tru1I	TTAA	3 cut(s)	137, 209, 219
Tru9I	TTAA	3 cut(s)	137, 209, 219
TseFI	GTSAC	2 cut(s)	104, 257
TseI	GCWGC	2 cut(s)	308, 429
Tsp45I	GTSAC	2 cut(s)	104, 257
TspDTI	ATGAA	2 cut(s)	407, 426
XceI	RCATGY	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.