Prupe.5G050200_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0009547
Physical Location & Seq
Forward (+)
5322144 .. 5329508
7365 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G050200.1

Sequence Viewer

Length: 1170 bp
ATGGCAGCAACAGCCCCTTCGCCCTCGCCAGCCCTAAGCAGCACCAGCTCCGGCGCCACTCCTTCCACCGCTGCGACCACCGCCACCGCGGCCGTGCCTGCCGTCGCTCCGTTCCAGACGGTGCACCGTACGGACACGCCACCCAAGACCCTTCGCGGGCTTAACAAGCCCAAGTGTAAACAGTGCGGCAATGTCGCTCGTTCCCGGTGTCCATACGAGTCATGCAAGAGTTGCTGCTCAAAAGCTCAAAATCCATGTCATATTCATGTTTTGAAATCAAATGCAACATTTCCAGACAAGGCACCAACATCAAGCTCTCCTCTATTTGACCATCAATCAATTGAGGCATCACCATCAGGGAATTCACATCGAGTTGCATCACTCCGGCAACTTTCGAACAATTTTGCTCAATTCAATAATGTGCATCTTCCCCTTCGTTCTAGGAAGCCTTTGACCAAAAAGGATGCCGTAGCTATTAATGAGTGGAGATTTTCCAAGTTAAAGGAATACAAGGACAGAAACATCGAAGTGGAAAATGAAGCTTTTGATCGATACACGCAGAATGTCACCCTATTAGAGGAAGTGTTTTCTGTGAAATCTATCATGGAGGAGTCCATTGGGGATGAAGCTGAACTCAAATCCATATCAACCGATAATAGTACTACTGCTACTACAGAAGAAGACACTGAGGCTATGGTCTCAGGGTTGAAGTTGAAGTTGAGATCAAATCCAATGAGAACCAATAACTTCAGAAAGAGGATACAGCAAGTTGTTGACGAGGGATTAAAGAAACTTAAAAAACGTGAGTTAGATGATGGGGAGAAGGAACCAATTGTGGGAACTGGATTGGATCCGGGGCCCAAAGAAGGGGAAAAATGGCAGGCCGAAAGGGCTTCTGCTCTAGGCGATCTCATTGATAAGCTGAACAAGGCCCGAAATGAGGAGGATCTGAAGTTGTGCTTGGAGATGAAATCTCAGCTCTTCAAGGAACATAAATTGACTAGTACATCAGAATCTGAAGAGAAACAGGCTACAAAGAATGATTTGGAACCCCGAAAAGAGTCGAATTATTCATTTCCTAAAGTCGTTAGCACTACCGAAATCGATCAAGAAACTCTCAATATCGTCTACACTCACTTCTCTTCCCTTGAGCATATACAAGGTTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF702

Protein Analysis

390

Amino Acids

43.12

Weight (kDa)

8.02

Isoelectric Point (pI)

48.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 53, 301
AccI GTMKAC 1 cut(s) 1128
AccII CGCG 2 cut(s) 89, 156
AciI CCGC 6 cut(s) 69, 81, 87, 89, 156, 186
AclWI GGATC 3 cut(s) 845, 858, 954
AcoI YGGCCR 1 cut(s) 90
AcsI RAATTY 1 cut(s) 361
AcuI CTGAAG 3 cut(s) 733, 971, 1038
AcyI GRCGYC 1 cut(s) 54
AfaI GTAC 3 cut(s) 130, 661, 1006
AfiI CCNNNNNNNGG 6 cut(s) 156, 577, 836, 866, 867, 940
AgsI TTSAA 5 cut(s) 274, 415, 709, 715, 985
AhlI ACTAGT 1 cut(s) 1001
AjuI GAANNNNNNNTTGG 2 cut(s) 944, 976
AluBI AGCT 8 cut(s) 48, 245, 315, 473, 542, 629, 922, 979
AluI AGCT 8 cut(s) 48, 245, 315, 473, 542, 629, 922, 979
Alw21I GWGCWC 1 cut(s) 126
Alw26I GTCTC 1 cut(s) 703
Alw44I GTGCAC 1 cut(s) 122
AlwI GGATC 3 cut(s) 845, 858, 954
AlwNI CAGNNNCTG 1 cut(s) 1016
AoxI GGCC 4 cut(s) 90, 857, 882, 930
ApaI GGGCCC 1 cut(s) 861
ApaLI GTGCAC 1 cut(s) 122
ApeKI GCWGC 4 cut(s) 5, 39, 71, 234
ApoI RAATTY 1 cut(s) 361
ArsI GACNNNNNNTTYG 2 cut(s) 241, 273
AseI ATTAAT 1 cut(s) 477
AspLEI GCGC 1 cut(s) 56
AspS9I GGNCC 3 cut(s) 857, 858, 931
AsuC2I CCSGG 2 cut(s) 205, 855
AsuHPI GGTGA 2 cut(s) 342, 559
AsuII TTCGAA 1 cut(s) 395
BaeGI GKGCMC 2 cut(s) 126, 861
BamHI GGATCC 1 cut(s) 850
BanI GGYRCC 2 cut(s) 53, 301
BanII GRGCYC 1 cut(s) 861
BbsI GAAGAC 1 cut(s) 687
Bbv12I GWGCWC 1 cut(s) 126
BbvI GCAGC 4 cut(s) 17, 51, 58, 221
BccI CCATC 3 cut(s) 339, 361, 809
BceAI ACGGC 3 cut(s) 77, 86, 452
BciVI GTATCC 1 cut(s) 753
BcnI CCSGG 2 cut(s) 205, 855
BcoDI GTCTC 1 cut(s) 703
BcuI ACTAGT 1 cut(s) 1001
BfaI CTAG 3 cut(s) 441, 902, 1002
BfmI CTRYAG 1 cut(s) 672
BfoI RGCGCY 1 cut(s) 57
BfuI GTATCC 1 cut(s) 753
BglI GCCNNNNNGGC 2 cut(s) 89, 890
BisI GCNGC 6 cut(s) 6, 40, 72, 90, 187, 235
BlsI GCNGC 6 cut(s) 7, 41, 73, 91, 188, 236
BmcAI AGTACT 1 cut(s) 661
Bme1390I CCNGG 2 cut(s) 205, 855
BmgT120I GGNCC 3 cut(s) 857, 858, 931
BmiI GGNNCC 7 cut(s) 55, 303, 828, 852, 858, 859, 1050
BmrFI CCNGG 2 cut(s) 205, 855
BmsI GCATC 4 cut(s) 356, 386, 433, 454
BpiI GAAGAC 1 cut(s) 687
Bpu10I CCTNAGC 1 cut(s) 35
Bpu14I TTCGAA 1 cut(s) 395
BpuEI CTTGAG 1 cut(s) 1169
BpuMI CCSGG 2 cut(s) 205, 855
Bsa29I ATCGAT 2 cut(s) 550, 1104
BsaHI GRCGYC 1 cut(s) 54
BsaI GGTCTC 1 cut(s) 703
BsaJI CCNNGG 2 cut(s) 87, 854
Bsc4I CCNNNNNNNGG 6 cut(s) 156, 577, 836, 866, 867, 940
Bse1I ACTGG 1 cut(s) 847
Bse3DI GCAATG 1 cut(s) 196
BseCI ATCGAT 2 cut(s) 550, 1104
BseDI CCNNGG 2 cut(s) 87, 854
BseGI GGATG 2 cut(s) 469, 628
BseLI CCNNNNNNNGG 6 cut(s) 156, 577, 836, 866, 867, 940
BseMI GCAATG 1 cut(s) 196
BseMII CTCAG 3 cut(s) 678, 714, 989
BseNI ACTGG 1 cut(s) 847
BseRI GAGGAG 3 cut(s) 309, 623, 956
BseSI GKGCMC 2 cut(s) 126, 861
BseX3I CGGCCG 1 cut(s) 90
BseXI GCAGC 4 cut(s) 17, 51, 58, 221
Bsh1236I CGCG 2 cut(s) 89, 156
Bsh1285I CGRYCG 1 cut(s) 93
BshFI GGCC 4 cut(s) 92, 859, 884, 932
BshNI GGYRCC 2 cut(s) 53, 301
BshVI ATCGAT 2 cut(s) 550, 1104
BsiEI CGRYCG 1 cut(s) 93
BsiHKAI GWGCWC 1 cut(s) 126
BsiSI CCGG 4 cut(s) 51, 205, 385, 854
BsiWI CGTACG 1 cut(s) 128
BslI CCNNNNNNNGG 6 cut(s) 156, 577, 836, 866, 867, 940
BsmAI GTCTC 1 cut(s) 703
BsnI GGCC 4 cut(s) 92, 859, 884, 932
Bso31I GGTCTC 1 cut(s) 703
Bsp119I TTCGAA 1 cut(s) 395
Bsp120I GGGCCC 1 cut(s) 857
Bsp1286I GDGCHC 2 cut(s) 126, 861
Bsp143I GATC 6 cut(s) 547, 722, 850, 907, 946, 1105
BspACI CCGC 6 cut(s) 69, 81, 87, 89, 156, 186
BspANI GGCC 4 cut(s) 92, 859, 884, 932
BspCNI CTCAG 3 cut(s) 679, 713, 988
BspDI ATCGAT 2 cut(s) 550, 1104
BspFNI CGCG 2 cut(s) 89, 156
BspLI GGNNCC 7 cut(s) 55, 303, 828, 852, 858, 859, 1050
BspPI GGATC 3 cut(s) 845, 858, 954
BspQI GCTCTTC 1 cut(s) 986
BspT104I TTCGAA 1 cut(s) 395
BspT107I GGYRCC 2 cut(s) 53, 301
BspTNI GGTCTC 1 cut(s) 703
BsrDI GCAATG 1 cut(s) 196
BsrI ACTGG 1 cut(s) 847
BssECI CCNNGG 2 cut(s) 87, 854
BssMI GATC 6 cut(s) 547, 722, 850, 907, 946, 1105
BssNI GRCGYC 1 cut(s) 54
Bst4CI ACNGT 3 cut(s) 121, 128, 183
Bst6I CTCTTC 3 cut(s) 986, 1014, 1147
BstACI GRCGYC 1 cut(s) 54
BstAPI GCANNNNNTGC 1 cut(s) 231
BstBI TTCGAA 1 cut(s) 395
BstC8I GCNNGC 4 cut(s) 30, 99, 158, 882
BstDEI CTNAG 4 cut(s) 35, 687, 700, 975
BstDSI CCRYGG 1 cut(s) 87
BstENI CCTNNNNNAGG 1 cut(s) 575
BstF5I GGATG 2 cut(s) 469, 628
BstFNI CGCG 2 cut(s) 89, 156
BstH2I RGCGCY 1 cut(s) 57
BstHHI GCGC 1 cut(s) 56
BstKTI GATC 6 cut(s) 550, 725, 853, 910, 949, 1108
BstMAI GTCTC 1 cut(s) 703
BstMBI GATC 6 cut(s) 547, 722, 850, 907, 946, 1105
BstMCI CGRYCG 1 cut(s) 93
BstMWI GCNNNNNNNGC 8 cut(s) 11, 45, 80, 89, 98, 166, 231, 890
BstSCI CCNGG 2 cut(s) 203, 853
BstSFI CTRYAG 1 cut(s) 672
BstSLI GKGCMC 2 cut(s) 126, 861
BstUI CGCG 2 cut(s) 89, 156
BstV1I GCAGC 4 cut(s) 17, 51, 58, 221
BstV2I GAAGAC 1 cut(s) 687
BstX2I RGATCY 2 cut(s) 850, 946
BstYI RGATCY 2 cut(s) 850, 946
BstZI CGGCCG 1 cut(s) 90
Bsu15I ATCGAT 2 cut(s) 550, 1104
BsuI GTATCC 1 cut(s) 753
BsuRI GGCC 4 cut(s) 92, 859, 884, 932
BsuTUI ATCGAT 2 cut(s) 550, 1104
BtgI CCRYGG 1 cut(s) 87
BtsCI GGATG 2 cut(s) 469, 628
BtsIMutI CAGTG 2 cut(s) 188, 684
Cac8I GCNNGC 4 cut(s) 30, 99, 158, 882
CaiI CAGNNNCTG 1 cut(s) 1016
CfoI GCGC 1 cut(s) 56
Cfr13I GGNCC 3 cut(s) 857, 858, 931
Cfr42I CCGCGG 1 cut(s) 90
ClaI ATCGAT 2 cut(s) 550, 1104
Csp6I GTAC 3 cut(s) 129, 660, 1005
CviAII CATG 4 cut(s) 222, 255, 266, 604
CviQI GTAC 3 cut(s) 129, 660, 1005
DdeI CTNAG 4 cut(s) 35, 687, 700, 975
DinI GGCGCC 1 cut(s) 55
DpnI GATC 6 cut(s) 549, 724, 852, 909, 948, 1107
DpnII GATC 6 cut(s) 547, 722, 850, 907, 946, 1105
EaeI YGGCCR 1 cut(s) 90
EagI CGGCCG 1 cut(s) 90
Eam1104I CTCTTC 3 cut(s) 986, 1014, 1147
EarI CTCTTC 3 cut(s) 986, 1014, 1147
EclXI CGGCCG 1 cut(s) 90
Eco24I GRGCYC 1 cut(s) 861
Eco31I GGTCTC 1 cut(s) 703
Eco52I CGGCCG 1 cut(s) 90
Eco57I CTGAAG 3 cut(s) 733, 971, 1038
EcoNI CCTNNNNNAGG 1 cut(s) 575
EcoO109I RGGNCCY 1 cut(s) 857
EcoRI GAATTC 1 cut(s) 361
EcoT38I GRGCYC 1 cut(s) 861
EgeI GGCGCC 1 cut(s) 55
EheI GGCGCC 1 cut(s) 55
FaeI CATG 4 cut(s) 225, 258, 269, 607
FalI AAGNNNNNCTT 2 cut(s) 944, 976
FatI CATG 4 cut(s) 221, 254, 265, 603
FauI CCCGC 1 cut(s) 149
FblI GTMKAC 1 cut(s) 1128
Fnu4HI GCNGC 6 cut(s) 6, 40, 72, 90, 187, 235
FokI GGATG 2 cut(s) 476, 635
FriOI GRGCYC 1 cut(s) 861
Fsp4HI GCNGC 6 cut(s) 6, 40, 72, 90, 187, 235
FspBI CTAG 3 cut(s) 441, 902, 1002
GlaI GCGC 1 cut(s) 55
GluI GCNGC 6 cut(s) 6, 40, 72, 90, 187, 235
HaeII RGCGCY 1 cut(s) 57
HaeIII GGCC 4 cut(s) 92, 859, 884, 932
HapII CCGG 4 cut(s) 51, 205, 385, 854
HhaI GCGC 1 cut(s) 56
Hin1I GRCGYC 1 cut(s) 54
Hin1II CATG 4 cut(s) 225, 258, 269, 607
Hin6I GCGC 1 cut(s) 54
HinP1I GCGC 1 cut(s) 54
HincII GTYRAC 1 cut(s) 775
HindII GTYRAC 1 cut(s) 775
HindIII AAGCTT 1 cut(s) 540
HinfI GANTC 4 cut(s) 218, 611, 1013, 1061
HpaII CCGG 4 cut(s) 51, 205, 385, 854
HphI GGTGA 2 cut(s) 342, 559
Hpy166II GTNNAC 4 cut(s) 124, 179, 775, 1129
Hpy188I TCNGA 4 cut(s) 752, 951, 1012, 1018
Hpy188III TCNNGA 3 cut(s) 115, 293, 1109
Hpy8I GTNNAC 4 cut(s) 124, 179, 775, 1129
Hpy99I CGWCG 1 cut(s) 107
HpyAV CCTTC 6 cut(s) 27, 72, 161, 443, 817, 860
HpyCH4III ACNGT 3 cut(s) 121, 128, 183
HpyCH4IV ACGT 1 cut(s) 802
HpyCH4V TGCA 5 cut(s) 124, 225, 284, 377, 424
HpyF10VI GCNNNNNNNGC 8 cut(s) 11, 45, 80, 89, 98, 166, 231, 890
HpyF3I CTNAG 4 cut(s) 35, 687, 700, 975
HpySE526I ACGT 1 cut(s) 802
Hsp92I GRCGYC 1 cut(s) 54
Hsp92II CATG 4 cut(s) 225, 258, 269, 607
HspAI GCGC 1 cut(s) 54
KasI GGCGCC 1 cut(s) 53
KspI CCGCGG 1 cut(s) 90
Kzo9I GATC 6 cut(s) 547, 722, 850, 907, 946, 1105
LguI GCTCTTC 1 cut(s) 986
LmnI GCTCC 2 cut(s) 53, 112
Lsp1109I GCAGC 4 cut(s) 17, 51, 58, 221
LweI GCATC 4 cut(s) 356, 386, 433, 454
MaeI CTAG 3 cut(s) 441, 902, 1002
MaeII ACGT 1 cut(s) 802
MaeIII GTNAC 1 cut(s) 565
MalI GATC 6 cut(s) 549, 724, 852, 909, 948, 1107
MboI GATC 6 cut(s) 547, 722, 850, 907, 946, 1105
MboII GAAGA 6 cut(s) 419, 689, 692, 973, 1031, 1134
MfeI CAATTG 2 cut(s) 339, 831
MflI RGATCY 2 cut(s) 850, 946
MhlI GDGCHC 2 cut(s) 126, 861
MluCI AATT 7 cut(s) 339, 361, 400, 410, 831, 995, 1066
Mly113I GGCGCC 1 cut(s) 54
MlyI GAGTC 3 cut(s) 227, 620, 1070
MseI TTAA 5 cut(s) 162, 477, 500, 785, 795
MslI CAYNNNNRTG 2 cut(s) 264, 527
MspA1I CMGCKG 2 cut(s) 71, 89
MspI CCGG 4 cut(s) 51, 205, 385, 854
MspR9I CCNGG 2 cut(s) 205, 855
MunI CAATTG 2 cut(s) 339, 831
MvnI CGCG 2 cut(s) 89, 156
MwoI GCNNNNNNNGC 8 cut(s) 11, 45, 80, 89, 98, 166, 231, 890
NarI GGCGCC 1 cut(s) 54
NciI CCSGG 2 cut(s) 205, 855
NdeII GATC 6 cut(s) 547, 722, 850, 907, 946, 1105
NlaIII CATG 4 cut(s) 225, 258, 269, 607
NlaIV GGNNCC 7 cut(s) 55, 303, 828, 852, 858, 859, 1050
NmuCI GTSAC 1 cut(s) 565
NspV TTCGAA 1 cut(s) 395
PciSI GCTCTTC 1 cut(s) 986
PfeI GAWTC 1 cut(s) 1013
Pfl23II CGTACG 1 cut(s) 128
PkrI GCNGC 6 cut(s) 7, 41, 73, 91, 188, 236
PleI GAGTC 3 cut(s) 226, 619, 1069
PluTI GGCGCC 1 cut(s) 57
PpsI GAGTC 3 cut(s) 226, 619, 1069
PshBI ATTAAT 1 cut(s) 477
PspLI CGTACG 1 cut(s) 128
PspN4I GGNNCC 7 cut(s) 55, 303, 828, 852, 858, 859, 1050
PspOMI GGGCCC 1 cut(s) 857
PspPI GGNCC 3 cut(s) 857, 858, 931
PstNI CAGNNNCTG 1 cut(s) 1016
PsuI RGATCY 2 cut(s) 850, 946
RsaI GTAC 3 cut(s) 130, 661, 1006
RsaNI GTAC 3 cut(s) 129, 660, 1005
RseI CAYNNNNRTG 2 cut(s) 264, 527
SacII CCGCGG 1 cut(s) 90
SapI GCTCTTC 1 cut(s) 986
SaqAI TTAA 5 cut(s) 162, 477, 500, 785, 795
SatI GCNGC 6 cut(s) 6, 40, 72, 90, 187, 235
Sau3AI GATC 6 cut(s) 547, 722, 850, 907, 946, 1105
Sau96I GGNCC 3 cut(s) 857, 858, 931
ScaI AGTACT 1 cut(s) 661
SchI GAGTC 3 cut(s) 227, 620, 1070
ScrFI CCNGG 2 cut(s) 205, 855
SduI GDGCHC 2 cut(s) 126, 861
SfaNI GCATC 4 cut(s) 356, 386, 433, 454
SfcI CTRYAG 1 cut(s) 672
SfoI GGCGCC 1 cut(s) 55
Sfr303I CCGCGG 1 cut(s) 90
SfuI TTCGAA 1 cut(s) 395
SgrBI CCGCGG 1 cut(s) 90
SmiMI CAYNNNNRTG 2 cut(s) 264, 527
SmlI CTYRAG 1 cut(s) 1148
SmoI CTYRAG 1 cut(s) 1148
SpeI ACTAGT 1 cut(s) 1001
Sse9I AATT 7 cut(s) 339, 361, 400, 410, 831, 995, 1066
SsiI CCGC 6 cut(s) 69, 81, 87, 89, 156, 186
SspDI GGCGCC 1 cut(s) 53
SspMI CTAG 3 cut(s) 441, 902, 1002
StyD4I CCNGG 2 cut(s) 203, 853
TaaI ACNGT 3 cut(s) 121, 128, 183
TaiI ACGT 1 cut(s) 805
TaqI TCGA 6 cut(s) 370, 395, 525, 550, 1064, 1104
TasI AATT 7 cut(s) 339, 361, 400, 410, 831, 995, 1066
TatI WGTACW 2 cut(s) 659, 1004
TauI GCSGC 2 cut(s) 92, 189
TfiI GAWTC 1 cut(s) 1013
Tru1I TTAA 5 cut(s) 162, 477, 500, 785, 795
Tru9I TTAA 5 cut(s) 162, 477, 500, 785, 795
TscAI CASTG 2 cut(s) 188, 691
TseFI GTSAC 1 cut(s) 565
TseI GCWGC 4 cut(s) 5, 39, 71, 234
Tsp45I GTSAC 1 cut(s) 565
TspDTI ATGAA 5 cut(s) 254, 552, 639, 983, 1062
TspGWI ACGGA 2 cut(s) 99, 146
TspRI CASTG 2 cut(s) 188, 691
VneI GTGCAC 1 cut(s) 122
VspI ATTAAT 1 cut(s) 477
XagI CCTNNNNNAGG 1 cut(s) 575
XapI RAATTY 1 cut(s) 361
XmiI GTMKAC 1 cut(s) 1128
XspI CTAG 3 cut(s) 441, 902, 1002
ZrmI AGTACT 1 cut(s) 661
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.