Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0009547

Physical Location & Seq

Genomic Coordinates Reverse (-)

12466934 .. 12472277

Gene Structure 5344 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g20870.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGGCTTCTCCTTCCCCAGCCCTAAACGCCACCACCTCCGACGCCTCTCATGCCGTCGCCTCCGCCGCCGTCCCCCCGCCCCCCTTCACCGCCGTCTTCCGCTCCGAAACCCCCACCAAGACGCTCCGCGGCCTCAACAAGCCCAAGTGCAAGGTCTGCGGCAATGTCGCTCGCTCCAGGTGTCCTTTTGAGTCTTGCAAGAGTTGCTGCTCAAGAGCTCAAAATCCATGTTACATTCATGTTTTGAAAGCAAATTCAACTATTACAGACAAGGCACCAGCCTCAAGCAGTCCTCAGTTTGACCATCAGTCTACTGAGGCATCACCATCAGGGAACTCGCATAGAGTTGCTTCACTCCGACAACTTTCGAACAATTTTGCGCATTTCAACACTGTGCATTTTAGAATTACCACACAGAAGCCGCTGACCAGAAAGGATGCTGTTGCTATTAATGAATGGAGGTTTGCCAAGGTAAAGGAATTCAGGGACAGAAACATTGAAGTGGAAAATGAAGCTTTTGATCGATACATGCAGAACATCAGCTTATTAGAGGAGGTGTTTTCTGTGAACTCTAACGAGGAAGAGTCCATTGCGGATGGATCATTCATATCAAACTATGACATGACTACAACAGAAGGTGACAATGGAGATATGGTCTCAGGGTTGAAGTTAAAGTTGAGATCAAATCCAATGAGAACCAGTAATTTCAGAAAGAGGATACAGCAAATTGTTGATCATGGATTAAAGAAGCTGAAAACATGTGAACCTGCTGATGGAGACAAGGAACCGAGTGACCAAACTGAATTGGATAAGGGGACTAGAACAGGAGAAAAATGGTGGGCTGAAAGGGCTTCAGCTTTAAGTGATCTCATTGATAAATTGAACAAAGCCCGCAATGAAGAGGATCTACAGTCTTGCATGGAGATGAAGACTCAGCTCTTCAGTGAACTGAAATCTTTGAGCAGCTCAGAATTGGAAGACACGGAGACCATGGAGAAACAGACTACGAAGAATAATTTGGAAACCAGGAAAGAGTCGCAATATTTATTTCCTCACTTGGTTAGTACCACTGCCATTGATCAAGAAACTCTCAATAGCGTTAATGCACACTTCTCTTCCCTTGAGCAGATAGAAGGTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF702

Protein Analysis

381

Amino Acids

42.45

Weight (kDa)

6.19

Isoelectric Point (pI)

48.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009547)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32730
fragaria_vesca	FvH4_5g20870
malus_domestica	MD06G1043400.v1.1 MD16G1267400.v1.1
prunus_persica	Prupe.5G050200_v2.0.a1
pyrus_communis	pycom06g03630 pycom06g03640 pycom16g23690
rosa_chinensis	RchiOBHm_Chr7g0207891
rosa_laevigata	RLG00000003278
rosa_multiflora	Rmu_co7991772.1_g000001 Rmu_sc0006577.1_g000002 Rmu_ssc0000451.1_g000023
rosa_roxburghii	Rroxscaffold_3G00251070
rosa_rugosa	Rorug07G0100100
rosa_samantha	Rh2CG132500 Rh7AG233300 Rh7AG233400 Rh7BG229000 Rh7CG248700 Rh7DG239400
rosa_wichuraiana	Rw7G020030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	381
Acc36I	ACCTGC	1 cut(s)	775
AccB1I	GGYRCC	1 cut(s)	274
AccBSI	CCGCTC	1 cut(s)	102
AccI	GTMKAC	1 cut(s)	311
AccII	CGCG	1 cut(s)	129
AclWI	GGATC	2 cut(s)	607, 912
AcsI	RAATTY	2 cut(s)	253, 479
AcuI	CTGAAG	2 cut(s)	837, 925
AcyI	GRCGYC	1 cut(s)	42
AfaI	GTAC	1 cut(s)	1066
AfiI	CCNNNNNNNGG	1 cut(s)	773
AflIII	ACRYGT	1 cut(s)	758
AgsI	TTSAA	6 cut(s)	247, 258, 388, 500, 667, 883
AhdI	GACNNNNNGTC	1 cut(s)	307
AjnI	CCWGG	2 cut(s)	176, 1025
AjuI	GAANNNNNNNTTGG	2 cut(s)	1001, 1033
AluBI	AGCT	7 cut(s)	218, 515, 543, 751, 857, 937, 966
AluI	AGCT	7 cut(s)	218, 515, 543, 751, 857, 937, 966
Alw21I	GWGCWC	1 cut(s)	220
Alw26I	GTCTC	3 cut(s)	661, 771, 980
AlwI	GGATC	2 cut(s)	607, 912
AoxI	GGCC	1 cut(s)	130
ApeKI	GCWGC	2 cut(s)	207, 963
ApoI	RAATTY	2 cut(s)	253, 479
AseI	ATTAAT	1 cut(s)	450
AspLEI	GCGC	1 cut(s)	382
AsuHPI	GGTGA	3 cut(s)	79, 315, 650
AsuII	TTCGAA	1 cut(s)	368
BanI	GGYRCC	1 cut(s)	274
BanII	GRGCYC	1 cut(s)	220
BarI	GAAGNNNNNNTAC	2 cut(s)	891, 923
BbsI	GAAGAC	3 cut(s)	88, 935, 984
Bbv12I	GWGCWC	1 cut(s)	220
BbvI	GCAGC	2 cut(s)	194, 975
BccI	CCATC	4 cut(s)	312, 334, 590, 767
BceAI	ACGGC	3 cut(s)	38, 53, 77
BciT130I	CCWGG	2 cut(s)	178, 1027
BciVI	GTATCC	1 cut(s)	711
BclI	TGATCA	2 cut(s)	733, 1078
BcoDI	GTCTC	3 cut(s)	661, 771, 980
BfaI	CTAG	1 cut(s)	819
BfmI	CTRYAG	1 cut(s)	908
BfuAI	ACCTGC	1 cut(s)	775
BfuI	GTATCC	1 cut(s)	711
BisI	GCNGC	6 cut(s)	66, 130, 160, 208, 422, 964
BlsI	GCNGC	6 cut(s)	67, 131, 161, 209, 423, 965
Bme1390I	CCNGG	2 cut(s)	178, 1027
BmeRI	GACNNNNNGTC	1 cut(s)	307
BmiI	GGNNCC	2 cut(s)	276, 786
BmrFI	CCNGG	2 cut(s)	178, 1027
BmsI	GCATC	2 cut(s)	329, 427
BpiI	GAAGAC	3 cut(s)	88, 935, 984
BpmI	CTGGAG	1 cut(s)	160
Bpu14I	TTCGAA	1 cut(s)	368
BpuEI	CTTGAG	3 cut(s)	196, 268, 1142
Bsa29I	ATCGAT	1 cut(s)	523
BsaHI	GRCGYC	1 cut(s)	42
BsaI	GGTCTC	2 cut(s)	661, 980
BsaJI	CCNNGG	3 cut(s)	127, 468, 990
BsaXI	ACNNNNNCTCC	2 cut(s)	639, 669
Bsc4I	CCNNNNNNNGG	1 cut(s)	773
Bse1I	ACTGG	1 cut(s)	699
Bse3DI	GCAATG	3 cut(s)	169, 588, 901
BseBI	CCWGG	2 cut(s)	178, 1027
BseCI	ATCGAT	1 cut(s)	523
BseDI	CCNNGG	3 cut(s)	127, 468, 990
BseGI	GGATG	2 cut(s)	442, 601
BseLI	CCNNNNNNNGG	1 cut(s)	773
BseMI	GCAATG	3 cut(s)	169, 588, 901
BseMII	CTCAG	5 cut(s)	306, 308, 672, 947, 981
BseNI	ACTGG	1 cut(s)	699
BseRI	GAGGAG	1 cut(s)	566
BseXI	GCAGC	2 cut(s)	194, 975
BseYI	CCCAGC	1 cut(s)	16
Bsh1236I	CGCG	1 cut(s)	129
BshFI	GGCC	1 cut(s)	132
BshNI	GGYRCC	1 cut(s)	274
BshVI	ATCGAT	1 cut(s)	523
BsiHKAI	GWGCWC	1 cut(s)	220
BslFI	GGGAC	3 cut(s)	56, 500, 829
BslI	CCNNNNNNNGG	1 cut(s)	773
BsmAI	GTCTC	3 cut(s)	661, 771, 980
BsmFI	GGGAC	3 cut(s)	56, 500, 829
BsnI	GGCC	1 cut(s)	132
Bso31I	GGTCTC	2 cut(s)	661, 980
Bsp119I	TTCGAA	1 cut(s)	368
Bsp1286I	GDGCHC	1 cut(s)	220
Bsp143I	GATC	7 cut(s)	520, 599, 680, 733, 865, 904, 1078
Bsp19I	CCATGG	1 cut(s)	990
BspANI	GGCC	1 cut(s)	132
BspCNI	CTCAG	5 cut(s)	307, 307, 671, 946, 980
BspDI	ATCGAT	1 cut(s)	523
BspFNI	CGCG	1 cut(s)	129
BspLI	GGNNCC	2 cut(s)	276, 786
BspMI	ACCTGC	1 cut(s)	775
BspPI	GGATC	2 cut(s)	607, 912
BspQI	GCTCTTC	1 cut(s)	944
BspT104I	TTCGAA	1 cut(s)	368
BspT107I	GGYRCC	1 cut(s)	274
BspTNI	GGTCTC	2 cut(s)	661, 980
BsrBI	CCGCTC	1 cut(s)	102
BsrDI	GCAATG	3 cut(s)	169, 588, 901
BsrI	ACTGG	1 cut(s)	699
BssECI	CCNNGG	3 cut(s)	127, 468, 990
BssMI	GATC	7 cut(s)	520, 599, 680, 733, 865, 904, 1078
BssNI	GRCGYC	1 cut(s)	42
BssT1I	CCWWGG	2 cut(s)	468, 990
Bst2UI	CCWGG	2 cut(s)	178, 1027
Bst4CI	ACNGT	2 cut(s)	394, 912
Bst6I	CTCTTC	4 cut(s)	576, 894, 944, 1120
BstACI	GRCGYC	1 cut(s)	42
BstAPI	GCANNNNNTGC	2 cut(s)	156, 204
BstBI	TTCGAA	1 cut(s)	368
BstC8I	GCNNGC	2 cut(s)	172, 892
BstDEI	CTNAG	5 cut(s)	294, 315, 658, 933, 967
BstDSI	CCRYGG	2 cut(s)	127, 990
BstF5I	GGATG	2 cut(s)	442, 601
BstFNI	CGCG	1 cut(s)	129
BstHHI	GCGC	1 cut(s)	382
BstKTI	GATC	7 cut(s)	523, 602, 683, 736, 868, 907, 1081
BstMAI	GTCTC	3 cut(s)	661, 771, 980
BstMBI	GATC	7 cut(s)	520, 599, 680, 733, 865, 904, 1078
BstMWI	GCNNNNNNNGC	6 cut(s)	26, 50, 65, 156, 204, 848
BstNI	CCWGG	2 cut(s)	178, 1027
BstNSI	RCATGY	2 cut(s)	532, 762
BstSCI	CCNGG	2 cut(s)	176, 1025
BstSFI	CTRYAG	1 cut(s)	908
BstUI	CGCG	1 cut(s)	129
BstV1I	GCAGC	2 cut(s)	194, 975
BstV2I	GAAGAC	3 cut(s)	88, 935, 984
BstX2I	RGATCY	1 cut(s)	904
BstYI	RGATCY	1 cut(s)	904
Bsu15I	ATCGAT	1 cut(s)	523
BsuI	GTATCC	1 cut(s)	711
BsuRI	GGCC	1 cut(s)	132
BsuTUI	ATCGAT	1 cut(s)	523
BtgI	CCRYGG	2 cut(s)	127, 990
BtsCI	GGATG	2 cut(s)	442, 601
BtsI	GCAGTG	1 cut(s)	1068
BtsIMutI	CAGTG	3 cut(s)	390, 949, 1068
BveI	ACCTGC	1 cut(s)	775
Cac8I	GCNNGC	2 cut(s)	172, 892
CfoI	GCGC	1 cut(s)	382
Cfr42I	CCGCGG	1 cut(s)	130
ClaI	ATCGAT	1 cut(s)	523
CseI	GACGC	2 cut(s)	50, 130
Csp6I	GTAC	1 cut(s)	1065
CspCI	CAANNNNNGTGG	2 cut(s)	1057, 1092
CviAII	CATG	9 cut(s)	50, 228, 239, 529, 622, 737, 759, 919, 991
CviQI	GTAC	1 cut(s)	1065
DdeI	CTNAG	5 cut(s)	294, 315, 658, 933, 967
DpnI	GATC	7 cut(s)	522, 601, 682, 735, 867, 906, 1080
DpnII	GATC	7 cut(s)	520, 599, 680, 733, 865, 904, 1078
DriI	GACNNNNNGTC	1 cut(s)	307
Eam1104I	CTCTTC	4 cut(s)	576, 894, 944, 1120
Eam1105I	GACNNNNNGTC	1 cut(s)	307
EarI	CTCTTC	4 cut(s)	576, 894, 944, 1120
EciI	GGCGGA	1 cut(s)	52
Ecl136II	GAGCTC	1 cut(s)	218
Eco130I	CCWWGG	2 cut(s)	468, 990
Eco24I	GRGCYC	1 cut(s)	220
Eco31I	GGTCTC	2 cut(s)	661, 980
Eco53kI	GAGCTC	1 cut(s)	218
Eco57I	CTGAAG	2 cut(s)	837, 925
EcoICRI	GAGCTC	1 cut(s)	218
EcoRI	GAATTC	1 cut(s)	479
EcoRII	CCWGG	2 cut(s)	176, 1025
EcoT14I	CCWWGG	2 cut(s)	468, 990
EcoT38I	GRGCYC	1 cut(s)	220
ErhI	CCWWGG	2 cut(s)	468, 990
FaeI	CATG	9 cut(s)	53, 231, 242, 532, 625, 740, 762, 922, 994
FaqI	GGGAC	3 cut(s)	56, 500, 829
FatI	CATG	9 cut(s)	49, 227, 238, 528, 621, 736, 758, 918, 990
FauI	CCCGC	2 cut(s)	84, 899
FbaI	TGATCA	2 cut(s)	733, 1078
FblI	GTMKAC	1 cut(s)	311
Fnu4HI	GCNGC	6 cut(s)	66, 130, 160, 208, 422, 964
FokI	GGATG	2 cut(s)	449, 608
FriOI	GRGCYC	1 cut(s)	220
Fsp4HI	GCNGC	6 cut(s)	66, 130, 160, 208, 422, 964
FspBI	CTAG	1 cut(s)	819
FspI	TGCGCA	1 cut(s)	381
GlaI	GCGC	1 cut(s)	381
GluI	GCNGC	6 cut(s)	66, 130, 160, 208, 422, 964
GsaI	CCCAGC	1 cut(s)	20
GsuI	CTGGAG	1 cut(s)	160
HaeIII	GGCC	1 cut(s)	132
HgaI	GACGC	2 cut(s)	50, 130
HhaI	GCGC	1 cut(s)	382
Hin1I	GRCGYC	1 cut(s)	42
Hin1II	CATG	9 cut(s)	53, 231, 242, 532, 625, 740, 762, 922, 994
Hin6I	GCGC	1 cut(s)	380
HinP1I	GCGC	1 cut(s)	380
HindIII	AAGCTT	1 cut(s)	513
HinfI	GANTC	4 cut(s)	191, 584, 931, 1034
HphI	GGTGA	3 cut(s)	79, 315, 650
Hpy166II	GTNNAC	4 cut(s)	312, 568, 764, 947
Hpy188I	TCNGA	5 cut(s)	40, 106, 359, 710, 970
Hpy188III	TCNNGA	2 cut(s)	213, 1082
Hpy8I	GTNNAC	4 cut(s)	312, 568, 764, 947
Hpy99I	CGWCG	2 cut(s)	44, 59
HpyAV	CCTTC	4 cut(s)	21, 94, 629, 1127
HpyCH4III	ACNGT	2 cut(s)	394, 912
HpyCH4V	TGCA	6 cut(s)	150, 198, 397, 532, 918, 1106
HpyF10VI	GCNNNNNNNGC	6 cut(s)	26, 50, 65, 156, 204, 848
HpyF3I	CTNAG	5 cut(s)	294, 315, 658, 933, 967
Hsp92I	GRCGYC	1 cut(s)	42
Hsp92II	CATG	9 cut(s)	53, 231, 242, 532, 625, 740, 762, 922, 994
HspAI	GCGC	1 cut(s)	380
Ksp22I	TGATCA	2 cut(s)	733, 1078
KspI	CCGCGG	1 cut(s)	130
Kzo9I	GATC	7 cut(s)	520, 599, 680, 733, 865, 904, 1078
LguI	GCTCTTC	1 cut(s)	944
LmnI	GCTCC	3 cut(s)	107, 129, 179
Lsp1109I	GCAGC	2 cut(s)	194, 975
LweI	GCATC	2 cut(s)	329, 427
MaeI	CTAG	1 cut(s)	819
MaeIII	GTNAC	3 cut(s)	230, 638, 791
MalI	GATC	7 cut(s)	522, 601, 682, 735, 867, 906, 1080
MbiI	CCGCTC	1 cut(s)	102
MboI	GATC	7 cut(s)	520, 599, 680, 733, 865, 904, 1078
MboII	GAAGA	8 cut(s)	88, 593, 911, 931, 940, 989, 1021, 1107
MflI	RGATCY	1 cut(s)	904
MhlI	GDGCHC	1 cut(s)	220
MlyI	GAGTC	4 cut(s)	200, 593, 925, 1043
MmeI	TCCRAC	2 cut(s)	63, 382
MseI	TTAA	5 cut(s)	450, 671, 743, 860, 1101
MslI	CAYNNNNRTG	2 cut(s)	500, 923
MspA1I	CMGCKG	2 cut(s)	129, 424
MspR9I	CCNGG	2 cut(s)	178, 1027
MvaI	CCWGG	2 cut(s)	178, 1027
MvnI	CGCG	1 cut(s)	129
MwoI	GCNNNNNNNGC	6 cut(s)	26, 50, 65, 156, 204, 848
NcoI	CCATGG	1 cut(s)	990
NdeII	GATC	7 cut(s)	520, 599, 680, 733, 865, 904, 1078
NlaIII	CATG	9 cut(s)	53, 231, 242, 532, 625, 740, 762, 922, 994
NlaIV	GGNNCC	2 cut(s)	276, 786
NmuCI	GTSAC	2 cut(s)	638, 791
NsbI	TGCGCA	1 cut(s)	381
NspI	RCATGY	2 cut(s)	532, 762
NspV	TTCGAA	1 cut(s)	368
PciI	ACATGT	1 cut(s)	758
PciSI	GCTCTTC	1 cut(s)	944
PkrI	GCNGC	6 cut(s)	67, 131, 161, 209, 423, 965
PleI	GAGTC	4 cut(s)	199, 592, 925, 1042
PpsI	GAGTC	4 cut(s)	199, 592, 925, 1042
PscI	ACATGT	1 cut(s)	758
PshBI	ATTAAT	1 cut(s)	450
Psp124BI	GAGCTC	1 cut(s)	220
Psp6I	CCWGG	2 cut(s)	176, 1025
PspFI	CCCAGC	1 cut(s)	16
PspGI	CCWGG	2 cut(s)	176, 1025
PspN4I	GGNNCC	2 cut(s)	276, 786
PsuI	RGATCY	1 cut(s)	904
RsaI	GTAC	1 cut(s)	1066
RsaNI	GTAC	1 cut(s)	1065
RseI	CAYNNNNRTG	2 cut(s)	500, 923
SacI	GAGCTC	1 cut(s)	220
SacII	CCGCGG	1 cut(s)	130
SapI	GCTCTTC	1 cut(s)	944
SaqAI	TTAA	5 cut(s)	450, 671, 743, 860, 1101
SatI	GCNGC	6 cut(s)	66, 130, 160, 208, 422, 964
Sau3AI	GATC	7 cut(s)	520, 599, 680, 733, 865, 904, 1078
SchI	GAGTC	4 cut(s)	200, 593, 925, 1043
ScrFI	CCNGG	2 cut(s)	178, 1027
SduI	GDGCHC	1 cut(s)	220
SfaNI	GCATC	2 cut(s)	329, 427
SfcI	CTRYAG	1 cut(s)	908
Sfr303I	CCGCGG	1 cut(s)	130
SfuI	TTCGAA	1 cut(s)	368
SgrBI	CCGCGG	1 cut(s)	130
SmiMI	CAYNNNNRTG	2 cut(s)	500, 923
SmlI	CTYRAG	3 cut(s)	211, 283, 1121
SmoI	CTYRAG	3 cut(s)	211, 283, 1121
SspI	AATATT	1 cut(s)	1043
SspMI	CTAG	1 cut(s)	819
SstI	GAGCTC	1 cut(s)	220
StyD4I	CCNGG	2 cut(s)	176, 1025
StyI	CCWWGG	2 cut(s)	468, 990
TaaI	ACNGT	2 cut(s)	394, 912
TaqI	TCGA	2 cut(s)	368, 523
TauI	GCSGC	4 cut(s)	68, 132, 162, 424
Tru1I	TTAA	5 cut(s)	450, 671, 743, 860, 1101
Tru9I	TTAA	5 cut(s)	450, 671, 743, 860, 1101
TscAI	CASTG	3 cut(s)	397, 949, 1075
TseFI	GTSAC	2 cut(s)	638, 791
TseI	GCWGC	2 cut(s)	207, 963
Tsp45I	GTSAC	2 cut(s)	638, 791
TspDTI	ATGAA	6 cut(s)	227, 468, 525, 595, 912, 941
TspGWI	ACGGA	1 cut(s)	998
TspRI	CASTG	3 cut(s)	397, 949, 1075
VspI	ATTAAT	1 cut(s)	450
XapI	RAATTY	2 cut(s)	253, 479
XceI	RCATGY	2 cut(s)	532, 762
XmiI	GTMKAC	1 cut(s)	311
XspI	CTAG	1 cut(s)	819

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.