Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005487

Physical Location & Seq

Genomic Coordinates Reverse (-)

12068063 .. 12070455

Gene Structure 2393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G33270.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGGCGATGTCTCTCCGTTCCACTCCATTCATCTCTCTCCGTACGAGAAAAAGCTTTAACCTTTCTCCGAGAATTCTCGCCCTTAGGTTATCATGCTGCTCTGGTGGGTCTTCTCAAAATCAGAACTTTTCTACAGATTCCGAGAACAAGAGATCATTCGCTGTTGCCACCGGTGAGCTTTTCATCGGAATCGCGTCGAGGCTTTTGAAGAGTTCTAATCAAAAGACGCCGCCGATTGATGATGGTGATAGAATAGCTAGTGTAATTGAGGATGAGATTGAGCCAGCGATGATATGGGAACAAAGGGTTAAAGATGTTGAAGCGGAGAAAGAGAGGAGAGTCATTACAAGTCCTGGGTTTAGTTTCTCTGCTGCTGGTCTTTTGTTTCCTTATCATCTTGGAGTTGCTCAGTTGCTTATTGAAAAGGGTTACATAAAGGAAACTACTCCTTTAGCAGGATCTTCTGCTGGTGCTATAGTCTGTGCTGTGATAACCTCAGGAGCTACTATGCGAGAAGCCCTTGAAGCTACTAAGGAACTTGCTTATGATTGTCGACGCAATGGCACTGCTTTCCGTCTTGGGGCTGTCCTTAGAGAATCCATGGAGAGGTTACTGCCCGATGATATTCACATTAGGTCCAACGGGAGAATTCGTGTTGCCATCACTCAAGTGTTTTGGAGACCTAGAGGTCTTCTAGTGGATCAGTTCGACTCCAAAAGCGACTTGATAGATGCAGTTTTCACATCTTCTTTTATTCCAGGATATCTTGCACCAAGGCCTGCAACAATGTTCCGTAATCGACTTTGTGTTGATGGAGGCTTGACATTGTTTATGCCACCAACAGCTGCTGCTAAAACAGTTCGAGTTTGTGCTTTTTCCGCTAGTAACTTCAAACTAAAGGGTATTGAGATCTGCCCAGATTGCAACCCTTTAAACAGAGCAACATCTAGACAACTATTGAATTGGGCACTTGAGCCAGCAGAGGACGAGGTGTTGGAGAGGCTGTTTGAGTTAGGATACGCAGATGCAGCTACATGGGCTGAGATGAATCCAGTTGAGGGATTGGTCTATGACGATACTCCTACAGCTCAAGAGATTCCTACTAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004806 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005811 GO:0005829 GO:0005886 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0006996 GO:0008150 GO:0008152 GO:0009056 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010876 GO:0010883 GO:0010888 GO:0010889 GO:0010891 GO:0010896 GO:0010898 GO:0016020 GO:0016042 GO:0016043 GO:0016298 GO:0016787 GO:0016788 GO:0019216 GO:0019222 GO:0019433 GO:0019915 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031974 GO:0031981 GO:0032879 GO:0033036 GO:0034389 GO:0042592 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045834 GO:0046461 GO:0046464 GO:0046486 GO:0046503 GO:0048518 GO:0048519 GO:0048522 GO:0048878 GO:0050789 GO:0050794 GO:0050994 GO:0050996 GO:0051179 GO:0051235 GO:0052689 GO:0055088 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0090207 GO:0090208 GO:1901575 GO:1905952 GO:1905953

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Patatin

Protein Analysis

369

Amino Acids

40.57

Weight (kDa)

5.94

Isoelectric Point (pI)

42.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Patatin	PF01734	121 - 283	1.5e-18	Patatin-like phospholipase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005487)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33270 AT1G33270
fragaria_vesca	FvH4_3g12743 FvH4_3g29702 FvH4_4g06881 FvH4_4g16550 FvH4_5g19441 FvH4_5g29680 FvH4_5g29680 FvH4_5g29680 FvH4_5g29680 FvH4_6g34462 FvH4_6g34463
malus_domestica	MD15G1421100.v1.1
prunus_persica	Prupe.1G566300_v2.0.a1 Prupe.1G566300_v2.0.a1
pyrus_communis	pycom15g37340
rosa_chinensis	RchiOBHm_Chr7g0223001
rosa_laevigata	RLG00000002004
rosa_multiflora	Rmu_sc0006373.1_g000001 Rmu_sc0006514.1_g000023
rosa_roxburghii	Rroxscaffold_3G00236360
rosa_rugosa	Rorug07G0212600 Rorug07G0212700
rosa_samantha	Rh7AG357800 Rh7BG346000 Rh7CG375900 Rh7DG352700
rosa_wichuraiana	Rw7G030430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	687
AccI	GTMKAC	1 cut(s)	553
AccII	CGCG	1 cut(s)	194
AciI	CCGC	3 cut(s)	230, 323, 879
AclWI	GGATC	2 cut(s)	466, 708
AcsI	RAATTY	2 cut(s)	72, 648
AcyI	GRCGYC	1 cut(s)	227
AfaI	GTAC	1 cut(s)	43
AfiI	CCNNNNNNNGG	4 cut(s)	455, 580, 606, 1058
AgeI	ACCGGT	1 cut(s)	170
AgsI	TTSAA	6 cut(s)	208, 320, 422, 524, 892, 961
AjnI	CCWGG	2 cut(s)	352, 757
AleI	CACNNNNGTG	1 cut(s)	668
AluBI	AGCT	9 cut(s)	54, 178, 257, 503, 527, 845, 1031, 1088, 1107
AluI	AGCT	9 cut(s)	54, 178, 257, 503, 527, 845, 1031, 1088, 1107
Alw26I	GTCTC	2 cut(s)	15, 673
AlwI	GGATC	2 cut(s)	466, 708
AlwNI	CAGNNNCTG	1 cut(s)	848
AoxI	GGCC	1 cut(s)	776
ApeKI	GCWGC	5 cut(s)	96, 371, 845, 848, 1028
ApoI	RAATTY	2 cut(s)	72, 648
AsiGI	ACCGGT	1 cut(s)	170
AspS9I	GGNCC	1 cut(s)	636
AsuHPI	GGTGA	2 cut(s)	185, 257
AvaII	GGWCC	1 cut(s)	636
AxyI	CCTNAGG	2 cut(s)	83, 496
BaeGI	GKGCMC	1 cut(s)	970
BbsI	GAAGAC	2 cut(s)	102, 683
BbvI	GCAGC	5 cut(s)	83, 358, 832, 835, 1040
BccI	CCATC	3 cut(s)	236, 668, 806
BciT130I	CCWGG	2 cut(s)	354, 759
BciVI	GTATCC	1 cut(s)	1010
BcoDI	GTCTC	2 cut(s)	15, 673
BfaI	CTAG	6 cut(s)	258, 684, 695, 882, 948, 1104
BfmI	CTRYAG	3 cut(s)	132, 474, 1083
BfuI	GTATCC	1 cut(s)	1010
BglII	AGATCT	1 cut(s)	909
BisI	GCNGC	6 cut(s)	97, 230, 372, 846, 849, 1029
BlsI	GCNGC	6 cut(s)	98, 231, 373, 847, 850, 1030
Bme1390I	CCNGG	2 cut(s)	354, 759
Bme18I	GGWCC	1 cut(s)	636
BmgT120I	GGNCC	1 cut(s)	636
BmrFI	CCNGG	2 cut(s)	354, 759
BmsI	GCATC	2 cut(s)	721, 1015
BpiI	GAAGAC	2 cut(s)	102, 683
BpuEI	CTTGAG	3 cut(s)	651, 992, 1074
BsaHI	GRCGYC	1 cut(s)	227
BsaI	GGTCTC	1 cut(s)	673
BsaJI	CCNNGG	3 cut(s)	353, 600, 773
BsaWI	WCCGGW	1 cut(s)	170
BsaXI	ACNNNNNCTCC	4 cut(s)	637, 667, 989, 1019
Bsc4I	CCNNNNNNNGG	4 cut(s)	455, 580, 606, 1058
Bse118I	RCCGGY	1 cut(s)	170
Bse1I	ACTGG	1 cut(s)	1052
Bse21I	CCTNAGG	2 cut(s)	83, 496
Bse3DI	GCAATG	1 cut(s)	565
BseBI	CCWGG	2 cut(s)	354, 759
BseDI	CCNNGG	3 cut(s)	353, 600, 773
BseGI	GGATG	1 cut(s)	277
BseLI	CCNNNNNNNGG	4 cut(s)	455, 580, 606, 1058
BseMI	GCAATG	1 cut(s)	565
BseMII	CTCAG	3 cut(s)	422, 510, 1032
BseNI	ACTGG	1 cut(s)	1052
BseRI	GAGGAG	1 cut(s)	349
BseSI	GKGCMC	1 cut(s)	970
BseXI	GCAGC	5 cut(s)	83, 358, 832, 835, 1040
Bsh1236I	CGCG	1 cut(s)	194
BshFI	GGCC	1 cut(s)	778
BshTI	ACCGGT	1 cut(s)	170
BsiSI	CCGG	1 cut(s)	171
BsiWI	CGTACG	1 cut(s)	41
BslI	CCNNNNNNNGG	4 cut(s)	455, 580, 606, 1058
BsmAI	GTCTC	2 cut(s)	15, 673
BsnI	GGCC	1 cut(s)	778
Bso31I	GGTCTC	1 cut(s)	673
Bsp1286I	GDGCHC	1 cut(s)	970
Bsp143I	GATC	4 cut(s)	152, 458, 700, 909
Bsp19I	CCATGG	1 cut(s)	600
BspACI	CCGC	3 cut(s)	230, 323, 879
BspANI	GGCC	1 cut(s)	778
BspCNI	CTCAG	3 cut(s)	421, 509, 1033
BspFNI	CGCG	1 cut(s)	194
BspPI	GGATC	2 cut(s)	466, 708
BspTNI	GGTCTC	1 cut(s)	673
BsrDI	GCAATG	1 cut(s)	565
BsrFI	RCCGGY	1 cut(s)	170
BsrI	ACTGG	1 cut(s)	1052
BssAI	RCCGGY	1 cut(s)	170
BssECI	CCNNGG	3 cut(s)	353, 600, 773
BssMI	GATC	4 cut(s)	152, 458, 700, 909
BssNI	GRCGYC	1 cut(s)	227
BssT1I	CCWWGG	2 cut(s)	600, 773
Bst2UI	CCWGG	2 cut(s)	354, 759
Bst4CI	ACNGT	1 cut(s)	859
Bst6I	CTCTTC	1 cut(s)	203
BstACI	GRCGYC	1 cut(s)	227
BstC8I	GCNNGC	3 cut(s)	285, 780, 978
BstDEI	CTNAG	6 cut(s)	83, 408, 496, 531, 590, 1041
BstDSI	CCRYGG	1 cut(s)	600
BstENI	CCTNNNNNAGG	1 cut(s)	453
BstF5I	GGATG	1 cut(s)	277
BstFNI	CGCG	1 cut(s)	194
BstKTI	GATC	4 cut(s)	155, 461, 703, 912
BstMAI	GTCTC	2 cut(s)	15, 673
BstMBI	GATC	4 cut(s)	152, 458, 700, 909
BstMWI	GCNNNNNNNGC	5 cut(s)	524, 878, 921, 1028, 1037
BstNI	CCWGG	2 cut(s)	354, 759
BstSCI	CCNGG	2 cut(s)	352, 757
BstSFI	CTRYAG	3 cut(s)	132, 474, 1083
BstSLI	GKGCMC	1 cut(s)	970
BstUI	CGCG	1 cut(s)	194
BstV1I	GCAGC	5 cut(s)	83, 358, 832, 835, 1040
BstV2I	GAAGAC	2 cut(s)	102, 683
BstX2I	RGATCY	2 cut(s)	458, 909
BstYI	RGATCY	2 cut(s)	458, 909
Bsu36I	CCTNAGG	2 cut(s)	83, 496
BsuI	GTATCC	1 cut(s)	1010
BsuRI	GGCC	1 cut(s)	778
BtgI	CCRYGG	1 cut(s)	600
BtgZI	GCGATG	2 cut(s)	20, 302
BtsCI	GGATG	1 cut(s)	277
BtsI	GCAGTG	1 cut(s)	564
BtsIMutI	CAGTG	1 cut(s)	564
Cac8I	GCNNGC	3 cut(s)	285, 780, 978
CaiI	CAGNNNCTG	1 cut(s)	848
Cfr10I	RCCGGY	1 cut(s)	170
Cfr13I	GGNCC	1 cut(s)	636
CseI	GACGC	3 cut(s)	183, 235, 564
Csp6I	GTAC	1 cut(s)	42
CspAI	ACCGGT	1 cut(s)	170
CviAII	CATG	3 cut(s)	93, 601, 1035
CviQI	GTAC	1 cut(s)	42
DdeI	CTNAG	6 cut(s)	83, 408, 496, 531, 590, 1041
DpnI	GATC	4 cut(s)	154, 460, 702, 911
DpnII	GATC	4 cut(s)	152, 458, 700, 909
DraI	TTTAAA	1 cut(s)	933
DrdI	GACNNNNNNGTC	1 cut(s)	687
DseDI	GACNNNNNNGTC	1 cut(s)	687
Eam1104I	CTCTTC	1 cut(s)	203
EarI	CTCTTC	1 cut(s)	203
Eco130I	CCWWGG	2 cut(s)	600, 773
Eco147I	AGGCCT	1 cut(s)	778
Eco31I	GGTCTC	1 cut(s)	673
Eco32I	GATATC	1 cut(s)	764
Eco47I	GGWCC	1 cut(s)	636
Eco81I	CCTNAGG	2 cut(s)	83, 496
EcoNI	CCTNNNNNAGG	1 cut(s)	453
EcoRI	GAATTC	2 cut(s)	72, 648
EcoRII	CCWGG	2 cut(s)	352, 757
EcoRV	GATATC	1 cut(s)	764
EcoT14I	CCWWGG	2 cut(s)	600, 773
ErhI	CCWWGG	2 cut(s)	600, 773
FaeI	CATG	3 cut(s)	96, 604, 1038
FatI	CATG	3 cut(s)	92, 600, 1034
FblI	GTMKAC	1 cut(s)	553
Fnu4HI	GCNGC	6 cut(s)	97, 230, 372, 846, 849, 1029
FokI	GGATG	1 cut(s)	284
Fsp4HI	GCNGC	6 cut(s)	97, 230, 372, 846, 849, 1029
FspBI	CTAG	6 cut(s)	258, 684, 695, 882, 948, 1104
GluI	GCNGC	6 cut(s)	97, 230, 372, 846, 849, 1029
HaeIII	GGCC	1 cut(s)	778
HapII	CCGG	1 cut(s)	171
HgaI	GACGC	3 cut(s)	183, 235, 564
Hin1I	GRCGYC	1 cut(s)	227
Hin1II	CATG	3 cut(s)	96, 604, 1038
HincII	GTYRAC	1 cut(s)	554
HindII	GTYRAC	1 cut(s)	554
HindIII	AAGCTT	1 cut(s)	52
HinfI	GANTC	7 cut(s)	137, 189, 339, 596, 710, 1048, 1096
HpaII	CCGG	1 cut(s)	171
HphI	GGTGA	2 cut(s)	185, 257
Hpy166II	GTNNAC	1 cut(s)	554
Hpy188I	TCNGA	4 cut(s)	69, 123, 142, 188
Hpy188III	TCNNGA	3 cut(s)	498, 948, 1091
Hpy8I	GTNNAC	1 cut(s)	554
Hpy99I	CGWCG	2 cut(s)	199, 558
HpyCH4III	ACNGT	1 cut(s)	859
HpyCH4V	TGCA	5 cut(s)	734, 770, 782, 924, 1028
HpyF10VI	GCNNNNNNNGC	5 cut(s)	524, 878, 921, 1028, 1037
HpyF3I	CTNAG	6 cut(s)	83, 408, 496, 531, 590, 1041
Hsp92I	GRCGYC	1 cut(s)	227
Hsp92II	CATG	3 cut(s)	96, 604, 1038
Kzo9I	GATC	4 cut(s)	152, 458, 700, 909
LmnI	GCTCC	1 cut(s)	500
Lsp1109I	GCAGC	5 cut(s)	83, 358, 832, 835, 1040
LweI	GCATC	2 cut(s)	721, 1015
MaeI	CTAG	6 cut(s)	258, 684, 695, 882, 948, 1104
MaeIII	GTNAC	3 cut(s)	428, 609, 884
MalI	GATC	4 cut(s)	154, 460, 702, 911
MboI	GATC	4 cut(s)	152, 458, 700, 909
MboII	GAAGA	5 cut(s)	102, 220, 453, 683, 738
MflI	RGATCY	2 cut(s)	458, 909
MhlI	GDGCHC	1 cut(s)	970
MluCI	AATT	4 cut(s)	72, 264, 648, 961
MlyI	GAGTC	2 cut(s)	348, 704
MmeI	TCCRAC	2 cut(s)	663, 975
MseI	TTAA	3 cut(s)	57, 309, 932
MslI	CAYNNNNRTG	1 cut(s)	668
MspA1I	CMGCKG	1 cut(s)	845
MspI	CCGG	1 cut(s)	171
MspR9I	CCNGG	2 cut(s)	354, 759
MvaI	CCWGG	2 cut(s)	354, 759
MvnI	CGCG	1 cut(s)	194
MwoI	GCNNNNNNNGC	5 cut(s)	524, 878, 921, 1028, 1037
NcoI	CCATGG	1 cut(s)	600
NdeII	GATC	4 cut(s)	152, 458, 700, 909
NlaIII	CATG	3 cut(s)	96, 604, 1038
OliI	CACNNNNGTG	1 cut(s)	668
PceI	AGGCCT	1 cut(s)	778
PfeI	GAWTC	5 cut(s)	137, 189, 596, 1048, 1096
Pfl23II	CGTACG	1 cut(s)	41
PfoI	TCCNGGA	1 cut(s)	757
PinAI	ACCGGT	1 cut(s)	170
PkrI	GCNGC	6 cut(s)	98, 231, 373, 847, 850, 1030
PleI	GAGTC	2 cut(s)	347, 704
PpsI	GAGTC	2 cut(s)	347, 704
Psp6I	CCWGG	2 cut(s)	352, 757
PspGI	CCWGG	2 cut(s)	352, 757
PspLI	CGTACG	1 cut(s)	41
PspPI	GGNCC	1 cut(s)	636
PstNI	CAGNNNCTG	1 cut(s)	848
PsuI	RGATCY	2 cut(s)	458, 909
PvuII	CAGCTG	1 cut(s)	845
RsaI	GTAC	1 cut(s)	43
RsaNI	GTAC	1 cut(s)	42
RseI	CAYNNNNRTG	1 cut(s)	668
SalI	GTCGAC	1 cut(s)	552
SaqAI	TTAA	3 cut(s)	57, 309, 932
SatI	GCNGC	6 cut(s)	97, 230, 372, 846, 849, 1029
Sau3AI	GATC	4 cut(s)	152, 458, 700, 909
Sau96I	GGNCC	1 cut(s)	636
SchI	GAGTC	2 cut(s)	348, 704
ScrFI	CCNGG	2 cut(s)	354, 759
SduI	GDGCHC	1 cut(s)	970
SfaNI	GCATC	2 cut(s)	721, 1015
SfcI	CTRYAG	3 cut(s)	132, 474, 1083
SgrAI	CRCCGGYG	1 cut(s)	170
SinI	GGWCC	1 cut(s)	636
SmiMI	CAYNNNNRTG	1 cut(s)	668
SmlI	CTYRAG	3 cut(s)	666, 971, 1089
SmoI	CTYRAG	3 cut(s)	666, 971, 1089
Sse9I	AATT	4 cut(s)	72, 264, 648, 961
SseBI	AGGCCT	1 cut(s)	778
SsiI	CCGC	3 cut(s)	230, 323, 879
SspMI	CTAG	6 cut(s)	258, 684, 695, 882, 948, 1104
StuI	AGGCCT	1 cut(s)	778
StyD4I	CCNGG	2 cut(s)	352, 757
StyI	CCWWGG	2 cut(s)	600, 773
TaaI	ACNGT	1 cut(s)	859
TaqI	TCGA	5 cut(s)	197, 553, 708, 799, 862
TasI	AATT	4 cut(s)	72, 264, 648, 961
TauI	GCSGC	1 cut(s)	232
TfiI	GAWTC	5 cut(s)	137, 189, 596, 1048, 1096
Tru1I	TTAA	3 cut(s)	57, 309, 932
Tru9I	TTAA	3 cut(s)	57, 309, 932
TscAI	CASTG	1 cut(s)	571
TseI	GCWGC	5 cut(s)	96, 371, 845, 848, 1028
TspDTI	ATGAA	3 cut(s)	19, 172, 1061
TspGWI	ACGGA	4 cut(s)	5, 29, 563, 782
TspRI	CASTG	1 cut(s)	571
VpaK11BI	GGWCC	1 cut(s)	636
XagI	CCTNNNNNAGG	1 cut(s)	453
XapI	RAATTY	2 cut(s)	72, 648
XbaI	TCTAGA	1 cut(s)	947
XcmI	CCANNNNNNNNNTGG	1 cut(s)	291
XmiI	GTMKAC	1 cut(s)	553
XspI	CTAG	6 cut(s)	258, 684, 695, 882, 948, 1104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.