FvH4_6g34462

Belongs to the glycosyl hydrolase 17 family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
27204983 .. 27205516
534 bp
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UTR
Exon/CDS
Intron
FvH4_6g34462.t1

Sequence Viewer

Length: 534 bp
ATGGCTTCCCACTTTTCTCTCTCCATTGCTTCTCTCTCCGTCGTTTCTCTCATCACCCTCCTCTTCCTCGCCGCAACCGTCTCATCGGACGCCACCTCCTCCATCACCATCGGCGTCACCTATTCTGCCTCCACCGTCGCCACCTACCCTACCCCACCGCTATCGGAGTGCGTGGCCTCGACTGCCACTTCCCTCGGCCTTACCGCCCTCCGCCTTGACGTCTATGACCCCAACCTCATCTGCGCCTTCCTCTACTCAAACACCACCCTCCTCCTCACCATCCCCAATGCGTTGGTCCCACCTCCCGCCACCAACCGCACCAACTCCCTCCGGTGGCTTTACGCGCACATCGTCCCTTTCTTCCCTCGCACTAAGATCGCCGCCATCTCTGTCCCTTTCTGCTCTGTTGCCGACCCTTACGTGTTCTACAATTTCAAGGTGTCCTACATCACTGCTTCACAGCTCGGAGTCCCTGAGAGGGTTTATGTTTTAAACCCTTATGTCTTTTTTTGGGTTTTAGTTTGTTCTCGGTGA

Protein Analysis

178

Amino Acids

19.2

Weight (kDa)

8.38

Isoelectric Point (pI)

35.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 222
AccII CGCG 1 cut(s) 344
AciI CCGC 7 cut(s) 72, 158, 204, 211, 306, 316, 381
AcyI GRCGYC 3 cut(s) 90, 114, 219
AfiI CCNNNNNNNGG 2 cut(s) 333, 478
AflIII ACRYGT 1 cut(s) 420
AgsI TTSAA 1 cut(s) 436
AluBI AGCT 1 cut(s) 463
AluI AGCT 1 cut(s) 463
Alw26I GTCTC 1 cut(s) 85
AoxI GGCC 2 cut(s) 174, 196
AspLEI GCGC 2 cut(s) 245, 346
AspS9I GGNCC 1 cut(s) 295
AsuHPI GGTGA 4 cut(s) 46, 97, 109, 268
AvaII GGWCC 1 cut(s) 295
BccI CCATC 4 cut(s) 110, 116, 287, 392
BcgI CGANNNNNNTGC 2 cut(s) 358, 392
BcoDI GTCTC 1 cut(s) 85
BisI GCNGC 2 cut(s) 72, 381
BlsI GCNGC 2 cut(s) 73, 382
Bme18I GGWCC 1 cut(s) 295
BmgT120I GGNCC 1 cut(s) 295
BmiI GGNNCC 1 cut(s) 297
BsaAI YACGTR 1 cut(s) 421
BsaHI GRCGYC 3 cut(s) 90, 114, 219
BsaJI CCNNGG 1 cut(s) 193
BsaWI WCCGGW 1 cut(s) 330
BsaXI ACNNNNNCTCC 2 cut(s) 80, 110
Bsc4I CCNNNNNNNGG 2 cut(s) 333, 478
Bse3DI GCAATG 1 cut(s) 24
BseDI CCNNGG 1 cut(s) 193
BseGI GGATG 1 cut(s) 279
BseLI CCNNNNNNNGG 2 cut(s) 333, 478
BseMI GCAATG 1 cut(s) 24
BseMII CTCAG 1 cut(s) 465
BseRI GAGGAG 4 cut(s) 50, 88, 260, 263
Bsh1236I CGCG 1 cut(s) 344
BshFI GGCC 2 cut(s) 176, 198
BsiSI CCGG 1 cut(s) 331
BslFI GGGAC 4 cut(s) 281, 338, 377, 455
BslI CCNNNNNNNGG 2 cut(s) 333, 478
BsmAI GTCTC 1 cut(s) 85
BsmBI CGTCTC 1 cut(s) 85
BsmFI GGGAC 4 cut(s) 281, 338, 377, 455
BsnI GGCC 2 cut(s) 176, 198
Bsp143I GATC 1 cut(s) 375
BspACI CCGC 7 cut(s) 72, 158, 204, 211, 306, 316, 381
BspANI GGCC 2 cut(s) 176, 198
BspCNI CTCAG 1 cut(s) 466
BspFNI CGCG 1 cut(s) 344
BspLI GGNNCC 1 cut(s) 297
BsrDI GCAATG 1 cut(s) 24
BssECI CCNNGG 1 cut(s) 193
BssMI GATC 1 cut(s) 375
BssNI GRCGYC 3 cut(s) 90, 114, 219
Bst4CI ACNGT 2 cut(s) 79, 136
Bst6I CTCTTC 1 cut(s) 68
BstACI GRCGYC 3 cut(s) 90, 114, 219
BstBAI YACGTR 1 cut(s) 421
BstDEI CTNAG 2 cut(s) 372, 474
BstF5I GGATG 1 cut(s) 279
BstFNI CGCG 1 cut(s) 344
BstHHI GCGC 2 cut(s) 245, 346
BstKTI GATC 1 cut(s) 378
BstMAI GTCTC 1 cut(s) 85
BstMBI GATC 1 cut(s) 375
BstMWI GCNNNNNNNGC 2 cut(s) 182, 343
BstUI CGCG 1 cut(s) 344
BstXI CCANNNNNNTGG 1 cut(s) 292
BsuRI GGCC 2 cut(s) 176, 198
BtsCI GGATG 1 cut(s) 279
BtsI GCAGTG 1 cut(s) 450
BtsIMutI CAGTG 1 cut(s) 450
CfoI GCGC 2 cut(s) 245, 346
Cfr13I GGNCC 1 cut(s) 295
CseI GACGC 2 cut(s) 98, 103
CviJI RGCY 5 cut(s) 5, 176, 198, 337, 463
CviKI_1 RGCY 5 cut(s) 5, 176, 198, 337, 463
DdeI CTNAG 2 cut(s) 372, 474
DpnI GATC 1 cut(s) 377
DpnII GATC 1 cut(s) 375
DraI TTTAAA 1 cut(s) 492
Eam1104I CTCTTC 1 cut(s) 68
EarI CTCTTC 1 cut(s) 68
EciI GGCGGA 1 cut(s) 200
Eco47I GGWCC 1 cut(s) 295
Esp3I CGTCTC 1 cut(s) 85
FaiI YATR 3 cut(s) 225, 486, 501
FaqI GGGAC 4 cut(s) 281, 338, 377, 455
FauI CCCGC 1 cut(s) 313
Fnu4HI GCNGC 2 cut(s) 72, 381
FokI GGATG 1 cut(s) 266
Fsp4HI GCNGC 2 cut(s) 72, 381
GlaI GCGC 2 cut(s) 244, 345
GluI GCNGC 2 cut(s) 72, 381
HaeIII GGCC 2 cut(s) 176, 198
HapII CCGG 1 cut(s) 331
HgaI GACGC 2 cut(s) 98, 103
HhaI GCGC 2 cut(s) 245, 346
Hin1I GRCGYC 3 cut(s) 90, 114, 219
Hin6I GCGC 2 cut(s) 243, 344
HinP1I GCGC 2 cut(s) 243, 344
HinfI GANTC 1 cut(s) 468
HpaII CCGG 1 cut(s) 331
HphI GGTGA 4 cut(s) 46, 97, 109, 268
Hpy188I TCNGA 3 cut(s) 88, 166, 467
Hpy99I CGWCG 2 cut(s) 44, 140
HpyAV CCTTC 1 cut(s) 256
HpyCH4III ACNGT 2 cut(s) 79, 136
HpyCH4IV ACGT 2 cut(s) 219, 420
HpyF10VI GCNNNNNNNGC 2 cut(s) 182, 343
HpyF3I CTNAG 2 cut(s) 372, 474
HpySE526I ACGT 2 cut(s) 219, 420
Hsp92I GRCGYC 3 cut(s) 90, 114, 219
HspAI GCGC 2 cut(s) 243, 344
Kzo9I GATC 1 cut(s) 375
LpnPI CCDG 2 cut(s) 344, 486
MaeII ACGT 2 cut(s) 219, 420
MaeIII GTNAC 1 cut(s) 115
MalI GATC 1 cut(s) 377
MboI GATC 1 cut(s) 375
MboII GAAGA 2 cut(s) 55, 352
MluCI AATT 1 cut(s) 430
MlyI GAGTC 1 cut(s) 477
MseI TTAA 1 cut(s) 491
MspI CCGG 1 cut(s) 331
MvnI CGCG 1 cut(s) 344
MwoI GCNNNNNNNGC 2 cut(s) 182, 343
NdeII GATC 1 cut(s) 375
NlaIV GGNNCC 1 cut(s) 297
NmeAIII GCCGAG 1 cut(s) 174
NmuCI GTSAC 1 cut(s) 115
PcsI WCGNNNNNNNCGW 2 cut(s) 75, 348
PkrI GCNGC 2 cut(s) 73, 382
PleI GAGTC 1 cut(s) 476
PpsI GAGTC 1 cut(s) 476
Ppu21I YACGTR 1 cut(s) 421
PspN4I GGNNCC 1 cut(s) 297
PspPI GGNCC 1 cut(s) 295
SaqAI TTAA 1 cut(s) 491
SatI GCNGC 2 cut(s) 72, 381
Sau3AI GATC 1 cut(s) 375
Sau96I GGNCC 1 cut(s) 295
SchI GAGTC 1 cut(s) 477
SetI ASST 9 cut(s) 98, 122, 146, 222, 237, 304, 423, 441, 465
SinI GGWCC 1 cut(s) 295
Sse9I AATT 1 cut(s) 430
SsiI CCGC 7 cut(s) 72, 158, 204, 211, 306, 316, 381
TaaI ACNGT 2 cut(s) 79, 136
TaiI ACGT 2 cut(s) 222, 423
TaqI TCGA 1 cut(s) 179
TasI AATT 1 cut(s) 430
TauI GCSGC 2 cut(s) 74, 383
Tru1I TTAA 1 cut(s) 491
Tru9I TTAA 1 cut(s) 491
TscAI CASTG 1 cut(s) 457
TseFI GTSAC 1 cut(s) 115
Tsp45I GTSAC 1 cut(s) 115
TspGWI ACGGA 1 cut(s) 28
TspRI CASTG 1 cut(s) 457
VpaK11BI GGWCC 1 cut(s) 295
ZraI GACGTC 1 cut(s) 220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.