Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0005487

Physical Location & Seq

Genomic Coordinates Forward (+)

6206909 .. 6208995

Gene Structure 2087 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g06881.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGGCTTCCCACTTTTCTCTCTCCGCCGTTTCTCTCATCACCCTCCTCTTCCTCGCCGCAACCGTCTCGTCGGACGCCGCCTCTTCCATCACCATCGGAGTCACCTATTCCGCCTCCACCGTCGCCACCTACCCCACCCTTCCGCTACCGGAGCACGTGGCCTCGACCGTTACTTCCCTCGGCCTCGCCGCCCTCCTCCTCACCATCCCCAATGCATTGGTCCCACCTCTCACCGCCAACAGCACCACCGCCCTCCGCAATTTGAGTAACTTGGGAGCAATGGAGATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0009505 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

97

Amino Acids

9.7

Weight (kDa)

5.27

Isoelectric Point (pI)

26.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005487)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33270 AT1G33270
fragaria_vesca	FvH4_3g12743 FvH4_3g29702 FvH4_4g06881 FvH4_4g16550 FvH4_5g19441 FvH4_5g29680 FvH4_5g29680 FvH4_5g29680 FvH4_5g29680 FvH4_6g34462 FvH4_6g34463
malus_domestica	MD15G1421100.v1.1
prunus_persica	Prupe.1G566300_v2.0.a1 Prupe.1G566300_v2.0.a1
pyrus_communis	pycom15g37340
rosa_chinensis	RchiOBHm_Chr7g0223001
rosa_laevigata	RLG00000002004
rosa_multiflora	Rmu_sc0006373.1_g000001 Rmu_sc0006514.1_g000023
rosa_roxburghii	Rroxscaffold_3G00236360
rosa_rugosa	Rorug07G0212600 Rorug07G0212700
rosa_samantha	Rh7AG357800 Rh7BG346000 Rh7CG375900 Rh7DG352700
rosa_wichuraiana	Rw7G030430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	9 cut(s)	24, 57, 78, 111, 143, 189, 234, 249, 256
AcvI	CACGTG	1 cut(s)	157
AcyI	GRCGYC	1 cut(s)	75
Alw21I	GWGCWC	1 cut(s)	156
Alw26I	GTCTC	1 cut(s)	70
AoxI	GGCC	2 cut(s)	159, 181
AspS9I	GGNCC	1 cut(s)	220
AsuHPI	GGTGA	5 cut(s)	31, 82, 94, 193, 223
AvaII	GGWCC	1 cut(s)	220
BbrPI	CACGTG	1 cut(s)	157
Bbv12I	GWGCWC	1 cut(s)	156
BccI	CCATC	3 cut(s)	95, 101, 212
BceAI	ACGGC	1 cut(s)	11
BcgI	CGANNNNNNTGC	2 cut(s)	48, 82
BcoDI	GTCTC	1 cut(s)	70
BisI	GCNGC	3 cut(s)	57, 78, 189
BlsI	GCNGC	3 cut(s)	58, 79, 190
Bme18I	GGWCC	1 cut(s)	220
BmgT120I	GGNCC	1 cut(s)	220
BmiI	GGNNCC	1 cut(s)	222
BsaAI	YACGTR	1 cut(s)	157
BsaHI	GRCGYC	1 cut(s)	75
BsaJI	CCNNGG	1 cut(s)	178
BsaWI	WCCGGW	1 cut(s)	148
Bse3DI	GCAATG	1 cut(s)	285
BseDI	CCNNGG	1 cut(s)	178
BseGI	GGATG	1 cut(s)	204
BseMI	GCAATG	1 cut(s)	285
BseRI	GAGGAG	3 cut(s)	35, 185, 188
Bsh1285I	CGRYCG	1 cut(s)	168
BshFI	GGCC	2 cut(s)	161, 183
BsiEI	CGRYCG	1 cut(s)	168
BsiHKAI	GWGCWC	1 cut(s)	156
BsiSI	CCGG	1 cut(s)	149
BslFI	GGGAC	1 cut(s)	206
BsmAI	GTCTC	1 cut(s)	70
BsmBI	CGTCTC	1 cut(s)	70
BsmFI	GGGAC	1 cut(s)	206
BsnI	GGCC	2 cut(s)	161, 183
Bsp1286I	GDGCHC	1 cut(s)	156
BspACI	CCGC	9 cut(s)	24, 57, 78, 111, 143, 189, 234, 249, 256
BspANI	GGCC	2 cut(s)	161, 183
BspLI	GGNNCC	1 cut(s)	222
BsrDI	GCAATG	1 cut(s)	285
BssECI	CCNNGG	1 cut(s)	178
BssNI	GRCGYC	1 cut(s)	75
Bst4CI	ACNGT	3 cut(s)	64, 121, 169
Bst6I	CTCTTC	2 cut(s)	53, 88
BstACI	GRCGYC	1 cut(s)	75
BstBAI	YACGTR	1 cut(s)	157
BstF5I	GGATG	1 cut(s)	204
BstMAI	GTCTC	1 cut(s)	70
BstMCI	CGRYCG	1 cut(s)	168
BstMWI	GCNNNNNNNGC	1 cut(s)	151
BstXI	CCANNNNNNTGG	1 cut(s)	217
BsuRI	GGCC	2 cut(s)	161, 183
BtsCI	GGATG	1 cut(s)	204
Cfr13I	GGNCC	1 cut(s)	220
CseI	GACGC	1 cut(s)	83
CviJI	RGCY	3 cut(s)	5, 161, 183
CviKI_1	RGCY	3 cut(s)	5, 161, 183
Eam1104I	CTCTTC	2 cut(s)	53, 88
EarI	CTCTTC	2 cut(s)	53, 88
EciI	GGCGGA	2 cut(s)	13, 100
Eco47I	GGWCC	1 cut(s)	220
Eco72I	CACGTG	1 cut(s)	157
EcoT22I	ATGCAT	1 cut(s)	217
Esp3I	CGTCTC	1 cut(s)	70
FaiI	YATR	1 cut(s)	289
FaqI	GGGAC	1 cut(s)	206
Fnu4HI	GCNGC	3 cut(s)	57, 78, 189
FokI	GGATG	1 cut(s)	191
Fsp4HI	GCNGC	3 cut(s)	57, 78, 189
GluI	GCNGC	3 cut(s)	57, 78, 189
HaeIII	GGCC	2 cut(s)	161, 183
HapII	CCGG	1 cut(s)	149
HgaI	GACGC	1 cut(s)	83
Hin1I	GRCGYC	1 cut(s)	75
HinfI	GANTC	1 cut(s)	99
HpaII	CCGG	1 cut(s)	149
HphI	GGTGA	5 cut(s)	31, 82, 94, 193, 223
Hpy188I	TCNGA	2 cut(s)	73, 98
Hpy99I	CGWCG	2 cut(s)	73, 125
HpyAV	CCTTC	1 cut(s)	149
HpyCH4III	ACNGT	3 cut(s)	64, 121, 169
HpyCH4IV	ACGT	1 cut(s)	156
HpyCH4V	TGCA	1 cut(s)	215
HpyF10VI	GCNNNNNNNGC	1 cut(s)	151
HpySE526I	ACGT	1 cut(s)	156
Hsp92I	GRCGYC	1 cut(s)	75
LmnI	GCTCC	2 cut(s)	151, 275
LpnPI	CCDG	1 cut(s)	162
MaeII	ACGT	1 cut(s)	156
MaeIII	GTNAC	3 cut(s)	100, 169, 266
MboII	GAAGA	2 cut(s)	40, 75
MhlI	GDGCHC	1 cut(s)	156
MluCI	AATT	1 cut(s)	259
MlyI	GAGTC	1 cut(s)	108
MmeI	TCCRAC	1 cut(s)	51
Mph1103I	ATGCAT	1 cut(s)	217
MspI	CCGG	1 cut(s)	149
MwoI	GCNNNNNNNGC	1 cut(s)	151
NlaIV	GGNNCC	1 cut(s)	222
NmeAIII	GCCGAG	1 cut(s)	159
NmuCI	GTSAC	1 cut(s)	100
NsiI	ATGCAT	1 cut(s)	217
PcsI	WCGNNNNNNNCGW	1 cut(s)	60
PkrI	GCNGC	3 cut(s)	58, 79, 190
PleI	GAGTC	1 cut(s)	107
PmaCI	CACGTG	1 cut(s)	157
PmlI	CACGTG	1 cut(s)	157
PpsI	GAGTC	1 cut(s)	107
Ppu21I	YACGTR	1 cut(s)	157
PspCI	CACGTG	1 cut(s)	157
PspN4I	GGNNCC	1 cut(s)	222
PspPI	GGNCC	1 cut(s)	220
SatI	GCNGC	3 cut(s)	57, 78, 189
Sau96I	GGNCC	1 cut(s)	220
SchI	GAGTC	1 cut(s)	108
SduI	GDGCHC	1 cut(s)	156
SetI	ASST	4 cut(s)	107, 131, 159, 229
SgeI	CNNG	9 cut(s)	65, 79, 161, 167, 169, 175, 191, 197, 283
SinI	GGWCC	1 cut(s)	220
Sse9I	AATT	1 cut(s)	259
SsiI	CCGC	9 cut(s)	24, 57, 78, 111, 143, 189, 234, 249, 256
TaaI	ACNGT	3 cut(s)	64, 121, 169
TaiI	ACGT	1 cut(s)	159
TaqI	TCGA	1 cut(s)	164
TasI	AATT	1 cut(s)	259
TauI	GCSGC	3 cut(s)	59, 80, 191
TseFI	GTSAC	1 cut(s)	100
Tsp45I	GTSAC	1 cut(s)	100
VpaK11BI	GGWCC	1 cut(s)	220
Zsp2I	ATGCAT	1 cut(s)	217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.