Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0005487

Physical Location & Seq

Genomic Coordinates Reverse (-)

22762674 .. 22763451

Gene Structure 778 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g29702.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGCTTCCCACTTTTCTCTCTCTTCCGTTTCTTTCATCACCCTCCTCTTCCTCGCCGCAACCGCCTCGCCGGACGCCACCTCCTCCACCACCATCGACGTCACCTATTCCGCCTCCACTGTCGCCACCTACCCCACCCCTCCGCTACCGGAGCACGTGGCCTCGACCGTAACTTCTCTCGGCCTCGCCGCCCTCCGCCTTGACATCTCTAACCCCAACCTCGCCCGCGCCTTCCTCTACTCCAACACCACCCTCCTCCTCACCATCCCCAACGCGCTGGTCCCATCTCTCGCCACCAACCACACCAACGCCCTTCGGTTTGGTTTCAAGAGATCTCCCTCACTCCTCCGGTTTGGTTTAAAGATTCGTCTTGGTTTCAAGACCTCTCTCCCTCACTCCTCCACCGACCCCGACACCAATGGAACTACGTCGTCAGCTCCGCCTCCTCTGGCAACGACGACGAAAAAGTCGTTTGCGGTTGCGACGGGGGAGTTGTTCCCTGGGCCTGGCATCGACAGAAACTTCGGGAAGTTCTCCGATGAGAGAATCGAGAAGGTGATGGAGGATGAGATTCAGCCGGGGGTGGTTTGGGAGCAGCGCGTGAAGGATGTGAAGACGGAGAAAGAGAGGCGCGTGATTACCAGTCCCGGCTTTAGTTTTTCTGCGGCGGGGCTTCTTTTCCCTTATCATTTAGGTGCTGCTCAGTTCTTGATTGAGAATGGCTATATCAAGGTTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004806 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005811 GO:0005829 GO:0005886 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0006996 GO:0008150 GO:0008152 GO:0009056 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010876 GO:0010883 GO:0010888 GO:0010889 GO:0010891 GO:0010896 GO:0010898 GO:0016020 GO:0016042 GO:0016043 GO:0016298 GO:0016787 GO:0016788 GO:0019216 GO:0019222 GO:0019433 GO:0019915 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031974 GO:0031981 GO:0032879 GO:0033036 GO:0034389 GO:0042592 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045834 GO:0046461 GO:0046464 GO:0046486 GO:0046503 GO:0048518 GO:0048519 GO:0048522 GO:0048878 GO:0050789 GO:0050794 GO:0050994 GO:0050996 GO:0051179 GO:0051235 GO:0052689 GO:0055088 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0090207 GO:0090208 GO:1901575 GO:1905952 GO:1905953

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Patatin

Protein Analysis

247

Amino Acids

26.46

Weight (kDa)

9.15

Isoelectric Point (pI)

31.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005487)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33270 AT1G33270
fragaria_vesca	FvH4_3g12743 FvH4_3g29702 FvH4_4g06881 FvH4_4g16550 FvH4_5g19441 FvH4_5g29680 FvH4_5g29680 FvH4_5g29680 FvH4_5g29680 FvH4_6g34462 FvH4_6g34463
malus_domestica	MD15G1421100.v1.1
prunus_persica	Prupe.1G566300_v2.0.a1 Prupe.1G566300_v2.0.a1
pyrus_communis	pycom15g37340
rosa_chinensis	RchiOBHm_Chr7g0223001
rosa_laevigata	RLG00000002004
rosa_multiflora	Rmu_sc0006373.1_g000001 Rmu_sc0006514.1_g000023
rosa_roxburghii	Rroxscaffold_3G00236360
rosa_rugosa	Rorug07G0212600 Rorug07G0212700
rosa_samantha	Rh7AG357800 Rh7BG346000 Rh7CG375900 Rh7DG352700
rosa_wichuraiana	Rw7G030430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	466
AatII	GACGTC	1 cut(s)	102
AccII	CGCG	4 cut(s)	228, 275, 600, 633
AcvI	CACGTG	1 cut(s)	157
AcyI	GRCGYC	2 cut(s)	75, 99
AfiI	CCNNNNNNNGG	1 cut(s)	506
AgsI	TTSAA	2 cut(s)	328, 379
AjnI	CCWGG	2 cut(s)	499, 505
AluBI	AGCT	1 cut(s)	437
AluI	AGCT	1 cut(s)	437
Alw21I	GWGCWC	1 cut(s)	156
AoxI	GGCC	3 cut(s)	159, 181, 503
ApeKI	GCWGC	2 cut(s)	595, 698
ArsI	GACNNNNNNTTYG	2 cut(s)	506, 538
AspLEI	GCGC	4 cut(s)	230, 277, 600, 633
AspS9I	GGNCC	2 cut(s)	280, 503
AsuC2I	CCSGG	2 cut(s)	579, 648
AsuHPI	GGTGA	4 cut(s)	31, 94, 253, 568
AvaII	GGWCC	1 cut(s)	280
BbrPI	CACGTG	1 cut(s)	157
BbsI	GAAGAC	1 cut(s)	620
Bbv12I	GWGCWC	1 cut(s)	156
BbvI	GCAGC	2 cut(s)	607, 685
BccI	CCATC	4 cut(s)	101, 272, 292, 553
BcgI	CGANNNNNNTGC	2 cut(s)	48, 82
BciT130I	CCWGG	2 cut(s)	501, 507
BcnI	CCSGG	2 cut(s)	579, 648
BglII	AGATCT	1 cut(s)	332
BisI	GCNGC	5 cut(s)	57, 189, 596, 666, 699
BlsI	GCNGC	5 cut(s)	58, 190, 597, 667, 700
Bme1390I	CCNGG	4 cut(s)	501, 507, 579, 648
Bme18I	GGWCC	1 cut(s)	280
BmgT120I	GGNCC	2 cut(s)	280, 503
BmiI	GGNNCC	1 cut(s)	282
BmrFI	CCNGG	4 cut(s)	501, 507, 579, 648
BmsI	GCATC	1 cut(s)	519
BpiI	GAAGAC	1 cut(s)	620
BpuMI	CCSGG	2 cut(s)	579, 648
BsaAI	YACGTR	1 cut(s)	157
BsaHI	GRCGYC	2 cut(s)	75, 99
BsaJI	CCNNGG	3 cut(s)	499, 500, 578
BsaWI	WCCGGW	2 cut(s)	148, 348
BsaXI	ACNNNNNCTCC	2 cut(s)	65, 95
Bsc4I	CCNNNNNNNGG	1 cut(s)	506
Bse1I	ACTGG	1 cut(s)	642
BseBI	CCWGG	2 cut(s)	501, 507
BseDI	CCNNGG	3 cut(s)	499, 500, 578
BseGI	GGATG	3 cut(s)	264, 571, 613
BseLI	CCNNNNNNNGG	1 cut(s)	506
BseMII	CTCAG	1 cut(s)	716
BseNI	ACTGG	1 cut(s)	642
BseRI	GAGGAG	7 cut(s)	35, 73, 245, 248, 335, 388, 435
BseXI	GCAGC	2 cut(s)	607, 685
Bsh1236I	CGCG	4 cut(s)	228, 275, 600, 633
Bsh1285I	CGRYCG	1 cut(s)	168
BshFI	GGCC	3 cut(s)	161, 183, 505
BsiEI	CGRYCG	1 cut(s)	168
BsiHKAI	GWGCWC	1 cut(s)	156
BsiSI	CCGG	5 cut(s)	71, 149, 349, 578, 648
BslFI	GGGAC	2 cut(s)	266, 630
BslI	CCNNNNNNNGG	1 cut(s)	506
BsmFI	GGGAC	2 cut(s)	266, 630
BsnI	GGCC	3 cut(s)	161, 183, 505
Bsp1286I	GDGCHC	1 cut(s)	156
Bsp143I	GATC	1 cut(s)	332
BspANI	GGCC	3 cut(s)	161, 183, 505
BspCNI	CTCAG	1 cut(s)	715
BspFNI	CGCG	4 cut(s)	228, 275, 600, 633
BspLI	GGNNCC	1 cut(s)	282
BsrI	ACTGG	1 cut(s)	642
BssECI	CCNNGG	3 cut(s)	499, 500, 578
BssMI	GATC	1 cut(s)	332
BssNI	GRCGYC	2 cut(s)	75, 99
Bst2UI	CCWGG	2 cut(s)	501, 507
Bst4CI	ACNGT	2 cut(s)	121, 169
Bst6I	CTCTTC	2 cut(s)	28, 53
BstACI	GRCGYC	2 cut(s)	75, 99
BstBAI	YACGTR	1 cut(s)	157
BstC8I	GCNNGC	1 cut(s)	226
BstDEI	CTNAG	1 cut(s)	702
BstF5I	GGATG	3 cut(s)	264, 571, 613
BstFNI	CGCG	4 cut(s)	228, 275, 600, 633
BstHHI	GCGC	4 cut(s)	230, 277, 600, 633
BstKTI	GATC	1 cut(s)	335
BstMBI	GATC	1 cut(s)	332
BstMCI	CGRYCG	1 cut(s)	168
BstMWI	GCNNNNNNNGC	2 cut(s)	62, 151
BstNI	CCWGG	2 cut(s)	501, 507
BstSCI	CCNGG	4 cut(s)	499, 505, 577, 646
BstUI	CGCG	4 cut(s)	228, 275, 600, 633
BstV1I	GCAGC	2 cut(s)	607, 685
BstV2I	GAAGAC	1 cut(s)	620
BstX2I	RGATCY	1 cut(s)	332
BstXI	CCANNNNNNTGG	1 cut(s)	277
BstYI	RGATCY	1 cut(s)	332
BsuRI	GGCC	3 cut(s)	161, 183, 505
BtsCI	GGATG	3 cut(s)	264, 571, 613
BtsIMutI	CAGTG	1 cut(s)	117
Cac8I	GCNNGC	1 cut(s)	226
CfoI	GCGC	4 cut(s)	230, 277, 600, 633
Cfr13I	GGNCC	2 cut(s)	280, 503
CseI	GACGC	1 cut(s)	83
CviJI	RGCY	9 cut(s)	5, 161, 183, 437, 505, 577, 651, 673, 723
CviKI_1	RGCY	9 cut(s)	5, 161, 183, 437, 505, 577, 651, 673, 723
DdeI	CTNAG	1 cut(s)	702
DpnI	GATC	1 cut(s)	334
DpnII	GATC	1 cut(s)	332
DraI	TTTAAA	1 cut(s)	360
DrdI	GACNNNNNNGTC	1 cut(s)	466
DseDI	GACNNNNNNGTC	1 cut(s)	466
Eam1104I	CTCTTC	2 cut(s)	28, 53
EarI	CTCTTC	2 cut(s)	28, 53
EciI	GGCGGA	3 cut(s)	100, 185, 429
Eco47I	GGWCC	1 cut(s)	280
Eco72I	CACGTG	1 cut(s)	157
EcoRII	CCWGG	2 cut(s)	499, 505
FaiI	YATR	1 cut(s)	726
FaqI	GGGAC	2 cut(s)	266, 630
FauI	CCCGC	2 cut(s)	233, 661
Fnu4HI	GCNGC	5 cut(s)	57, 189, 596, 666, 699
FokI	GGATG	3 cut(s)	251, 578, 620
Fsp4HI	GCNGC	5 cut(s)	57, 189, 596, 666, 699
GlaI	GCGC	4 cut(s)	229, 276, 599, 632
GluI	GCNGC	5 cut(s)	57, 189, 596, 666, 699
HaeIII	GGCC	3 cut(s)	161, 183, 505
HapII	CCGG	5 cut(s)	71, 149, 349, 578, 648
HgaI	GACGC	1 cut(s)	83
HhaI	GCGC	4 cut(s)	230, 277, 600, 633
Hin1I	GRCGYC	2 cut(s)	75, 99
Hin6I	GCGC	4 cut(s)	228, 275, 598, 631
HinP1I	GCGC	4 cut(s)	228, 275, 598, 631
HinfI	GANTC	3 cut(s)	364, 546, 571
HpaII	CCGG	5 cut(s)	71, 149, 349, 578, 648
HphI	GGTGA	4 cut(s)	31, 94, 253, 568
Hpy188I	TCNGA	1 cut(s)	538
Hpy188III	TCNNGA	5 cut(s)	328, 379, 526, 550, 709
Hpy99I	CGWCG	5 cut(s)	101, 433, 460, 463, 487
HpyAV	CCTTC	4 cut(s)	241, 323, 547, 598
HpyCH4III	ACNGT	2 cut(s)	121, 169
HpyCH4IV	ACGT	3 cut(s)	99, 156, 428
HpyF10VI	GCNNNNNNNGC	2 cut(s)	62, 151
HpyF3I	CTNAG	1 cut(s)	702
HpySE526I	ACGT	3 cut(s)	99, 156, 428
Hsp92I	GRCGYC	2 cut(s)	75, 99
HspAI	GCGC	4 cut(s)	228, 275, 598, 631
Kzo9I	GATC	1 cut(s)	332
LmnI	GCTCC	3 cut(s)	151, 442, 592
Lsp1109I	GCAGC	2 cut(s)	607, 685
LweI	GCATC	1 cut(s)	519
MaeII	ACGT	3 cut(s)	99, 156, 428
MaeIII	GTNAC	2 cut(s)	100, 169
MalI	GATC	1 cut(s)	334
MboI	GATC	1 cut(s)	332
MboII	GAAGA	3 cut(s)	15, 40, 625
MflI	RGATCY	1 cut(s)	332
MhlI	GDGCHC	1 cut(s)	156
MmeI	TCCRAC	1 cut(s)	267
MseI	TTAA	2 cut(s)	359, 739
MslI	CAYNNNNRTG	1 cut(s)	693
MspI	CCGG	5 cut(s)	71, 149, 349, 578, 648
MspR9I	CCNGG	4 cut(s)	501, 507, 579, 648
MvaI	CCWGG	2 cut(s)	501, 507
MvnI	CGCG	4 cut(s)	228, 275, 600, 633
MwoI	GCNNNNNNNGC	2 cut(s)	62, 151
NciI	CCSGG	2 cut(s)	579, 648
NdeII	GATC	1 cut(s)	332
NlaIV	GGNNCC	1 cut(s)	282
NmeAIII	GCCGAG	1 cut(s)	159
NmuCI	GTSAC	1 cut(s)	100
PasI	CCCWGGG	1 cut(s)	500
PcsI	WCGNNNNNNNCGW	1 cut(s)	467
PfeI	GAWTC	3 cut(s)	364, 546, 571
PkrI	GCNGC	5 cut(s)	58, 190, 597, 667, 700
PmaCI	CACGTG	1 cut(s)	157
PmlI	CACGTG	1 cut(s)	157
Ppu21I	YACGTR	1 cut(s)	157
Psp6I	CCWGG	2 cut(s)	499, 505
PspCI	CACGTG	1 cut(s)	157
PspGI	CCWGG	2 cut(s)	499, 505
PspN4I	GGNNCC	1 cut(s)	282
PspPI	GGNCC	2 cut(s)	280, 503
PsuI	RGATCY	1 cut(s)	332
RseI	CAYNNNNRTG	1 cut(s)	693
SaqAI	TTAA	2 cut(s)	359, 739
SatI	GCNGC	5 cut(s)	57, 189, 596, 666, 699
Sau3AI	GATC	1 cut(s)	332
Sau96I	GGNCC	2 cut(s)	280, 503
ScrFI	CCNGG	4 cut(s)	501, 507, 579, 648
SduI	GDGCHC	1 cut(s)	156
SfaNI	GCATC	1 cut(s)	519
SinI	GGWCC	1 cut(s)	280
SmiMI	CAYNNNNRTG	1 cut(s)	693
StyD4I	CCNGG	4 cut(s)	499, 505, 577, 646
TaaI	ACNGT	2 cut(s)	121, 169
TaiI	ACGT	3 cut(s)	102, 159, 431
TaqI	TCGA	4 cut(s)	96, 164, 513, 549
TauI	GCSGC	3 cut(s)	59, 191, 668
TfiI	GAWTC	3 cut(s)	364, 546, 571
Tru1I	TTAA	2 cut(s)	359, 739
Tru9I	TTAA	2 cut(s)	359, 739
TscAI	CASTG	1 cut(s)	124
TseFI	GTSAC	1 cut(s)	100
TseI	GCWGC	2 cut(s)	595, 698
Tsp45I	GTSAC	1 cut(s)	100
TspDTI	ATGAA	1 cut(s)	25
TspGWI	ACGGA	2 cut(s)	16, 632
TspRI	CASTG	1 cut(s)	124
VpaK11BI	GGWCC	1 cut(s)	280
ZraI	GACGTC	1 cut(s)	100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.