Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0005487

Physical Location & Seq

Genomic Coordinates Reverse (-)

18800715 .. 18801981

Gene Structure 1267 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0212700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

ATGTTGCTGACCAGCATGCTATCCCTCTTGACAAACCCGACGACTACCACTTCGTCTGTGGTAGAAACTTCGAACCACAGTGGTATGCTAGGACTCTCAAGGAATAAGGCCACTGCCAAGCAGGACAAAAACTTCACGTCAAGGTCACTACCAATATCAGATCACCACTTCACTGCAAGTCCAACCCCAGCACCAGAGAGTGATAATGTCCAAGTCAAAAGCATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004806 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005811 GO:0005829 GO:0005886 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0006996 GO:0008150 GO:0008152 GO:0009056 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010876 GO:0010883 GO:0010888 GO:0010889 GO:0010891 GO:0010896 GO:0010898 GO:0016020 GO:0016042 GO:0016043 GO:0016298 GO:0016787 GO:0016788 GO:0019216 GO:0019222 GO:0019433 GO:0019915 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031974 GO:0031981 GO:0032879 GO:0033036 GO:0034389 GO:0042592 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045834 GO:0046461 GO:0046464 GO:0046486 GO:0046503 GO:0048518 GO:0048519 GO:0048522 GO:0048878 GO:0050789 GO:0050794 GO:0050994 GO:0050996 GO:0051179 GO:0051235 GO:0052689 GO:0055088 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0090207 GO:0090208 GO:1901575 GO:1905952 GO:1905953

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Patatin

Protein Analysis

75

Amino Acids

8.03

Weight (kDa)

8.25

Isoelectric Point (pI)

44.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005487)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33270 AT1G33270
fragaria_vesca	FvH4_3g12743 FvH4_3g29702 FvH4_4g06881 FvH4_4g16550 FvH4_5g19441 FvH4_5g29680 FvH4_5g29680 FvH4_5g29680 FvH4_5g29680 FvH4_6g34462 FvH4_6g34463
malus_domestica	MD15G1421100.v1.1
prunus_persica	Prupe.1G566300_v2.0.a1 Prupe.1G566300_v2.0.a1
pyrus_communis	pycom15g37340
rosa_chinensis	RchiOBHm_Chr7g0223001
rosa_laevigata	RLG00000002004
rosa_multiflora	Rmu_sc0006373.1_g000001 Rmu_sc0006514.1_g000023
rosa_roxburghii	Rroxscaffold_3G00236360
rosa_rugosa	Rorug07G0212600 Rorug07G0212700
rosa_samantha	Rh7AG357800 Rh7BG346000 Rh7CG375900 Rh7DG352700
rosa_wichuraiana	Rw7G030430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AjiI	CACGTC	1 cut(s)	138
AoxI	GGCC	1 cut(s)	108
ArsI	GACNNNNNNTTYG	2 cut(s)	34, 66
AsuHPI	GGTGA	1 cut(s)	155
AsuII	TTCGAA	1 cut(s)	71
BfaI	CTAG	1 cut(s)	89
BmgBI	CACGTC	1 cut(s)	138
Bpu14I	TTCGAA	1 cut(s)	71
BpuEI	CTTGAG	1 cut(s)	82
BseYI	CCCAGC	1 cut(s)	187
BshFI	GGCC	1 cut(s)	110
BsnI	GGCC	1 cut(s)	110
Bsp119I	TTCGAA	1 cut(s)	71
Bsp143I	GATC	1 cut(s)	160
BspANI	GGCC	1 cut(s)	110
BspT104I	TTCGAA	1 cut(s)	71
BssMI	GATC	1 cut(s)	160
Bst4CI	ACNGT	1 cut(s)	80
BstBI	TTCGAA	1 cut(s)	71
BstC8I	GCNNGC	1 cut(s)	17
BstKTI	GATC	1 cut(s)	163
BstMBI	GATC	1 cut(s)	160
BstNSI	RCATGY	1 cut(s)	19
BsuRI	GGCC	1 cut(s)	110
BtrI	CACGTC	1 cut(s)	138
BtsI	GCAGTG	2 cut(s)	111, 171
BtsIMutI	CAGTG	3 cut(s)	85, 111, 171
Cac8I	GCNNGC	1 cut(s)	17
CviAII	CATG	1 cut(s)	16
CviJI	RGCY	1 cut(s)	110
CviKI_1	RGCY	1 cut(s)	110
DpnI	GATC	1 cut(s)	162
DpnII	GATC	1 cut(s)	160
FaeI	CATG	1 cut(s)	19
FaiI	YATR	2 cut(s)	17, 86
FatI	CATG	1 cut(s)	15
FspBI	CTAG	1 cut(s)	89
GsaI	CCCAGC	1 cut(s)	191
HaeIII	GGCC	1 cut(s)	110
Hin1II	CATG	1 cut(s)	19
HinfI	GANTC	1 cut(s)	93
HphI	GGTGA	1 cut(s)	155
Hpy188I	TCNGA	1 cut(s)	160
Hpy188III	TCNNGA	1 cut(s)	28
Hpy99I	CGWCG	1 cut(s)	43
HpyCH4III	ACNGT	1 cut(s)	80
HpyCH4IV	ACGT	1 cut(s)	137
HpyCH4V	TGCA	1 cut(s)	176
HpySE526I	ACGT	1 cut(s)	137
Hsp92II	CATG	1 cut(s)	19
Kzo9I	GATC	1 cut(s)	160
LpnPI	CCDG	4 cut(s)	25, 107, 201, 207
MaeI	CTAG	1 cut(s)	89
MaeII	ACGT	1 cut(s)	137
MaeIII	GTNAC	1 cut(s)	144
MalI	GATC	1 cut(s)	162
MboI	GATC	1 cut(s)	160
MlyI	GAGTC	1 cut(s)	87
MmeI	TCCRAC	1 cut(s)	206
MnlI	CCTC	1 cut(s)	35
MseI	TTAA	1 cut(s)	226
NdeII	GATC	1 cut(s)	160
NlaIII	CATG	1 cut(s)	19
NmuCI	GTSAC	1 cut(s)	144
NspI	RCATGY	1 cut(s)	19
NspV	TTCGAA	1 cut(s)	71
PaeI	GCATGC	1 cut(s)	19
PleI	GAGTC	1 cut(s)	87
PpsI	GAGTC	1 cut(s)	87
PspFI	CCCAGC	1 cut(s)	187
SaqAI	TTAA	1 cut(s)	226
Sau3AI	GATC	1 cut(s)	160
SchI	GAGTC	1 cut(s)	87
SetI	ASST	2 cut(s)	140, 146
SfuI	TTCGAA	1 cut(s)	71
SmlI	CTYRAG	1 cut(s)	97
SmoI	CTYRAG	1 cut(s)	97
SphI	GCATGC	1 cut(s)	19
SspMI	CTAG	1 cut(s)	89
TaaI	ACNGT	1 cut(s)	80
TaiI	ACGT	1 cut(s)	140
TaqI	TCGA	1 cut(s)	71
Tru1I	TTAA	1 cut(s)	226
Tru9I	TTAA	1 cut(s)	226
TscAI	CASTG	3 cut(s)	85, 118, 178
TseFI	GTSAC	1 cut(s)	144
Tsp45I	GTSAC	1 cut(s)	144
TspRI	CASTG	3 cut(s)	85, 118, 178
XceI	RCATGY	1 cut(s)	19
XcmI	CCANNNNNNNNNTGG	1 cut(s)	55
XspI	CTAG	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.