Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0005487

Physical Location & Seq

Genomic Coordinates Forward (+)

18798736 .. 18800687

Gene Structure 1952 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0212600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGGCTCCAAAGTCCTTCCTCAGGCTCTGCTAACAATCCCAAGAAACCCTCACCACTACGCGCCGGTAAAGCTCGGGTTTTCAGCCGCCGTGTCTCGTCGGTCTTTCTTCAATTCCACTGGGGTTTCGCTTTCCAGGGCTTCATCGAGCTCAGTTAGGTCCAGACTCAGCCCCATTGTGGCTGCAAAATCTAGACGGGGCTTTGCTGTGAGAGCCGAGCCGGAAGGTGAAGCGGGAGCCACCGAGAATGAAGAAGCTGTTACTGAACCGGCTTCAGAGACCGTGGTGGAAGCTGAAGCAGAAGCAGTTCTGGAGTCTGAGCCTGAGCCTGAAGAAAAGAAGCCGCCGCGGAAGCCTCGTATCAAGCTCGGCGATATAATGGGGATACTAAATAGCCGGGCAATTGAGGCGGCAGAGAAGGAAAGGCCAGTTCCAGACATTAGGAGTGGAGACGTTGTGCAAATTAAACTGGAAGTTCCTGAAAACAAGCGTAGGTTGTCTATCTATAAAGGTATCGTTATTTCAAAGCAAAATGCTGGCATTCATACAACATTTCGCATTCGGAGGATTATTGCTGGCATAGGGGTTGAGATTGTTTTCCCTCTATACTCACCGAACATTAAGGAGTTGAAGGTACTTAGTCATAGGAAGGTCAGAAGGGCAAGGCTGTACTATTTGAGAGACAAACTTCCTAGGTTCTCGACTTTCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004806 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005811 GO:0005829 GO:0005886 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0006996 GO:0008150 GO:0008152 GO:0009056 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010876 GO:0010883 GO:0010888 GO:0010889 GO:0010891 GO:0010896 GO:0010898 GO:0016020 GO:0016042 GO:0016043 GO:0016298 GO:0016787 GO:0016788 GO:0019216 GO:0019222 GO:0019433 GO:0019915 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031974 GO:0031981 GO:0032879 GO:0033036 GO:0034389 GO:0042592 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045834 GO:0046461 GO:0046464 GO:0046486 GO:0046503 GO:0048518 GO:0048519 GO:0048522 GO:0048878 GO:0050789 GO:0050794 GO:0050994 GO:0050996 GO:0051179 GO:0051235 GO:0052689 GO:0055088 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0090207 GO:0090208 GO:1901575 GO:1905952 GO:1905953

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Patatin

Protein Analysis

237

Amino Acids

26.33

Weight (kDa)

10.21

Isoelectric Point (pI)

63.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L19	PF01245	134 - 231	5.2e-31	Ribosomal protein L19

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005487)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33270 AT1G33270
fragaria_vesca	FvH4_3g12743 FvH4_3g29702 FvH4_4g06881 FvH4_4g16550 FvH4_5g19441 FvH4_5g29680 FvH4_5g29680 FvH4_5g29680 FvH4_5g29680 FvH4_6g34462 FvH4_6g34463
malus_domestica	MD15G1421100.v1.1
prunus_persica	Prupe.1G566300_v2.0.a1 Prupe.1G566300_v2.0.a1
pyrus_communis	pycom15g37340
rosa_chinensis	RchiOBHm_Chr7g0223001
rosa_laevigata	RLG00000002004
rosa_multiflora	Rmu_sc0006373.1_g000001 Rmu_sc0006514.1_g000023
rosa_roxburghii	Rroxscaffold_3G00236360
rosa_rugosa	Rorug07G0212600 Rorug07G0212700
rosa_samantha	Rh7AG357800 Rh7BG346000 Rh7CG375900 Rh7DG352700
rosa_wichuraiana	Rw7G030430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	62, 349
AciI	CCGC	6 cut(s)	87, 233, 344, 347, 349, 410
AcuI	CTGAAG	3 cut(s)	258, 315, 351
AfaI	GTAC	2 cut(s)	636, 671
AfiI	CCNNNNNNNGG	2 cut(s)	22, 178
AgsI	TTSAA	4 cut(s)	112, 525, 631, 709
AjnI	CCWGG	1 cut(s)	134
AluBI	AGCT	5 cut(s)	73, 150, 257, 293, 367
AluI	AGCT	5 cut(s)	73, 150, 257, 293, 367
Alw21I	GWGCWC	1 cut(s)	152
Alw26I	GTCTC	4 cut(s)	99, 272, 444, 675
AlwNI	CAGNNNCTG	1 cut(s)	28
Ama87I	CYCGRG	1 cut(s)	74
AoxI	GGCC	1 cut(s)	425
ApeKI	GCWGC	1 cut(s)	182
Asp700I	GAANNNNTTC	1 cut(s)	306
AspA2I	CCTAGG	1 cut(s)	692
AspLEI	GCGC	1 cut(s)	64
AspS9I	GGNCC	1 cut(s)	159
AsuC2I	CCSGG	1 cut(s)	398
AsuHPI	GGTGA	3 cut(s)	44, 239, 603
AvaI	CYCGRG	1 cut(s)	74
AvaII	GGWCC	1 cut(s)	159
AvrII	CCTAGG	1 cut(s)	692
AxyI	CCTNAGG	1 cut(s)	21
BanII	GRGCYC	2 cut(s)	8, 152
Bbv12I	GWGCWC	1 cut(s)	152
BbvI	GCAGC	1 cut(s)	169
BceAI	ACGGC	1 cut(s)	74
BciT130I	CCWGG	1 cut(s)	136
BciVI	GTATCC	1 cut(s)	378
BcnI	CCSGG	1 cut(s)	398
BcoDI	GTCTC	4 cut(s)	99, 272, 444, 675
BfaI	CTAG	2 cut(s)	192, 693
BfuI	GTATCC	1 cut(s)	378
BisI	GCNGC	5 cut(s)	87, 183, 344, 347, 411
BlnI	CCTAGG	1 cut(s)	692
BlsI	GCNGC	5 cut(s)	88, 184, 345, 348, 412
Bme1390I	CCNGG	2 cut(s)	136, 398
Bme18I	GGWCC	1 cut(s)	159
BmeT110I	CYCGRG	1 cut(s)	74
BmgT120I	GGNCC	1 cut(s)	159
BmiI	GGNNCC	2 cut(s)	7, 238
BmrFI	CCNGG	2 cut(s)	136, 398
BmrI	ACTGGG	1 cut(s)	129
BmuI	ACTGGG	1 cut(s)	129
BpmI	CTGGAG	1 cut(s)	332
Bpu10I	CCTNAGC	1 cut(s)	324
BpuMI	CCSGG	1 cut(s)	398
BsaI	GGTCTC	1 cut(s)	272
BsaJI	CCNNGG	4 cut(s)	135, 282, 347, 692
BsaXI	ACNNNNNCTCC	2 cut(s)	441, 471
Bsc4I	CCNNNNNNNGG	2 cut(s)	22, 178
Bse118I	RCCGGY	2 cut(s)	64, 268
Bse1I	ACTGG	3 cut(s)	124, 428, 474
Bse21I	CCTNAGG	1 cut(s)	21
BseBI	CCWGG	1 cut(s)	136
BseDI	CCNNGG	4 cut(s)	135, 282, 347, 692
BseLI	CCNNNNNNNGG	2 cut(s)	22, 178
BseMII	CTCAG	5 cut(s)	35, 165, 181, 309, 315
BseNI	ACTGG	3 cut(s)	124, 428, 474
BseXI	GCAGC	1 cut(s)	169
Bsh1236I	CGCG	2 cut(s)	62, 349
BshFI	GGCC	1 cut(s)	427
BsiHKAI	GWGCWC	1 cut(s)	152
BsiHKCI	CYCGRG	1 cut(s)	74
BsiSI	CCGG	4 cut(s)	65, 221, 269, 397
BslI	CCNNNNNNNGG	2 cut(s)	22, 178
BsmAI	GTCTC	4 cut(s)	99, 272, 444, 675
BsmBI	CGTCTC	1 cut(s)	444
BsmI	GAATGC	2 cut(s)	540, 558
BsnI	GGCC	1 cut(s)	427
Bso31I	GGTCTC	1 cut(s)	272
BsoBI	CYCGRG	1 cut(s)	74
Bsp1286I	GDGCHC	2 cut(s)	8, 152
BspACI	CCGC	6 cut(s)	87, 233, 344, 347, 349, 410
BspANI	GGCC	1 cut(s)	427
BspCNI	CTCAG	5 cut(s)	34, 164, 180, 310, 316
BspFNI	CGCG	2 cut(s)	62, 349
BspLI	GGNNCC	2 cut(s)	7, 238
BspTNI	GGTCTC	1 cut(s)	272
BsrFI	RCCGGY	2 cut(s)	64, 268
BsrI	ACTGG	3 cut(s)	124, 428, 474
BssAI	RCCGGY	2 cut(s)	64, 268
BssECI	CCNNGG	4 cut(s)	135, 282, 347, 692
BssT1I	CCWWGG	1 cut(s)	692
Bst2UI	CCWGG	1 cut(s)	136
Bst4CI	ACNGT	1 cut(s)	283
BstC8I	GCNNGC	2 cut(s)	538, 577
BstDEI	CTNAG	6 cut(s)	21, 151, 167, 318, 324, 638
BstDSI	CCRYGG	2 cut(s)	282, 347
BstENI	CCTNNNNNAGG	1 cut(s)	20
BstFNI	CGCG	2 cut(s)	62, 349
BstHHI	GCGC	1 cut(s)	64
BstMAI	GTCTC	4 cut(s)	99, 272, 444, 675
BstMWI	GCNNNNNNNGC	4 cut(s)	70, 212, 352, 407
BstNI	CCWGG	1 cut(s)	136
BstSCI	CCNGG	2 cut(s)	134, 396
BstUI	CGCG	2 cut(s)	62, 349
BstV1I	GCAGC	1 cut(s)	169
Bsu36I	CCTNAGG	1 cut(s)	21
BsuI	GTATCC	1 cut(s)	378
BsuRI	GGCC	1 cut(s)	427
BtgI	CCRYGG	2 cut(s)	282, 347
BtsIMutI	CAGTG	1 cut(s)	117
Cac8I	GCNNGC	2 cut(s)	538, 577
CaiI	CAGNNNCTG	1 cut(s)	28
CfoI	GCGC	1 cut(s)	64
Cfr10I	RCCGGY	2 cut(s)	64, 268
Cfr13I	GGNCC	1 cut(s)	159
Cfr42I	CCGCGG	1 cut(s)	350
Csp6I	GTAC	2 cut(s)	635, 670
CviQI	GTAC	2 cut(s)	635, 670
DdeI	CTNAG	6 cut(s)	21, 151, 167, 318, 324, 638
Ecl136II	GAGCTC	1 cut(s)	150
Eco130I	CCWWGG	1 cut(s)	692
Eco24I	GRGCYC	2 cut(s)	8, 152
Eco31I	GGTCTC	1 cut(s)	272
Eco47I	GGWCC	1 cut(s)	159
Eco53kI	GAGCTC	1 cut(s)	150
Eco57I	CTGAAG	3 cut(s)	258, 315, 351
Eco81I	CCTNAGG	1 cut(s)	21
Eco88I	CYCGRG	1 cut(s)	74
EcoICRI	GAGCTC	1 cut(s)	150
EcoNI	CCTNNNNNAGG	1 cut(s)	20
EcoRII	CCWGG	1 cut(s)	134
EcoT14I	CCWWGG	1 cut(s)	692
EcoT38I	GRGCYC	2 cut(s)	8, 152
ErhI	CCWWGG	1 cut(s)	692
Esp3I	CGTCTC	1 cut(s)	444
FaiI	YATR	6 cut(s)	377, 507, 546, 581, 607, 645
FauI	CCCGC	1 cut(s)	226
Fnu4HI	GCNGC	5 cut(s)	87, 183, 344, 347, 411
FriOI	GRGCYC	2 cut(s)	8, 152
Fsp4HI	GCNGC	5 cut(s)	87, 183, 344, 347, 411
FspBI	CTAG	2 cut(s)	192, 693
GlaI	GCGC	1 cut(s)	63
GluI	GCNGC	5 cut(s)	87, 183, 344, 347, 411
GsuI	CTGGAG	1 cut(s)	332
HaeIII	GGCC	1 cut(s)	427
HapII	CCGG	4 cut(s)	65, 221, 269, 397
HhaI	GCGC	1 cut(s)	64
Hin6I	GCGC	1 cut(s)	62
HinP1I	GCGC	1 cut(s)	62
HinfI	GANTC	2 cut(s)	165, 314
HpaII	CCGG	4 cut(s)	65, 221, 269, 397
HphI	GGTGA	3 cut(s)	44, 239, 603
Hpy188I	TCNGA	4 cut(s)	277, 319, 564, 656
Hpy188III	TCNNGA	6 cut(s)	162, 192, 311, 434, 479, 700
Hpy99I	CGWCG	1 cut(s)	102
HpyAV	CCTTC	6 cut(s)	26, 218, 412, 625, 643, 651
HpyCH4III	ACNGT	1 cut(s)	283
HpyCH4IV	ACGT	1 cut(s)	453
HpyCH4V	TGCA	2 cut(s)	185, 460
HpyF10VI	GCNNNNNNNGC	4 cut(s)	70, 212, 352, 407
HpyF3I	CTNAG	6 cut(s)	21, 151, 167, 318, 324, 638
HpySE526I	ACGT	1 cut(s)	453
HspAI	GCGC	1 cut(s)	62
KspI	CCGCGG	1 cut(s)	350
LmnI	GCTCC	2 cut(s)	11, 236
Lsp1109I	GCAGC	1 cut(s)	169
MaeI	CTAG	2 cut(s)	192, 693
MaeII	ACGT	1 cut(s)	453
MaeIII	GTNAC	1 cut(s)	259
MboII	GAAGA	3 cut(s)	100, 263, 344
MfeI	CAATTG	1 cut(s)	402
MhlI	GDGCHC	2 cut(s)	8, 152
MluCI	AATT	3 cut(s)	112, 402, 462
MlyI	GAGTC	2 cut(s)	159, 323
MnlI	CCTC	6 cut(s)	30, 60, 366, 400, 558, 612
MroXI	GAANNNNTTC	1 cut(s)	306
MseI	TTAA	2 cut(s)	465, 621
MspA1I	CMGCKG	1 cut(s)	349
MspI	CCGG	4 cut(s)	65, 221, 269, 397
MspR9I	CCNGG	2 cut(s)	136, 398
MunI	CAATTG	1 cut(s)	402
Mva1269I	GAATGC	2 cut(s)	540, 558
MvaI	CCWGG	1 cut(s)	136
MvnI	CGCG	2 cut(s)	62, 349
MwoI	GCNNNNNNNGC	4 cut(s)	70, 212, 352, 407
NciI	CCSGG	1 cut(s)	398
NlaIV	GGNNCC	2 cut(s)	7, 238
NmeAIII	GCCGAG	2 cut(s)	241, 348
PctI	GAATGC	2 cut(s)	540, 558
PdmI	GAANNNNTTC	1 cut(s)	306
PkrI	GCNGC	5 cut(s)	88, 184, 345, 348, 412
PleI	GAGTC	2 cut(s)	159, 322
PpsI	GAGTC	2 cut(s)	159, 322
Psp124BI	GAGCTC	1 cut(s)	152
Psp6I	CCWGG	1 cut(s)	134
PspGI	CCWGG	1 cut(s)	134
PspN4I	GGNNCC	2 cut(s)	7, 238
PspPI	GGNCC	1 cut(s)	159
PstNI	CAGNNNCTG	1 cut(s)	28
RsaI	GTAC	2 cut(s)	636, 671
RsaNI	GTAC	2 cut(s)	635, 670
SacI	GAGCTC	1 cut(s)	152
SacII	CCGCGG	1 cut(s)	350
SaqAI	TTAA	2 cut(s)	465, 621
SatI	GCNGC	5 cut(s)	87, 183, 344, 347, 411
Sau96I	GGNCC	1 cut(s)	159
SchI	GAGTC	2 cut(s)	159, 323
ScrFI	CCNGG	2 cut(s)	136, 398
SduI	GDGCHC	2 cut(s)	8, 152
Sfr303I	CCGCGG	1 cut(s)	350
SgrBI	CCGCGG	1 cut(s)	350
SinI	GGWCC	1 cut(s)	159
Sse9I	AATT	3 cut(s)	112, 402, 462
SsiI	CCGC	6 cut(s)	87, 233, 344, 347, 349, 410
SspMI	CTAG	2 cut(s)	192, 693
SstI	GAGCTC	1 cut(s)	152
StyD4I	CCNGG	2 cut(s)	134, 396
StyI	CCWWGG	1 cut(s)	692
TaaI	ACNGT	1 cut(s)	283
TaiI	ACGT	1 cut(s)	456
TaqI	TCGA	2 cut(s)	146, 701
TaqII	GACCGA	1 cut(s)	90
TasI	AATT	3 cut(s)	112, 402, 462
TatI	WGTACW	1 cut(s)	669
TauI	GCSGC	4 cut(s)	89, 346, 349, 413
Tru1I	TTAA	2 cut(s)	465, 621
Tru9I	TTAA	2 cut(s)	465, 621
TscAI	CASTG	1 cut(s)	124
TseI	GCWGC	1 cut(s)	182
TspDTI	ATGAA	3 cut(s)	132, 264, 533
TspRI	CASTG	1 cut(s)	124
VpaK11BI	GGWCC	1 cut(s)	159
XagI	CCTNNNNNAGG	1 cut(s)	20
XbaI	TCTAGA	1 cut(s)	191
XmaJI	CCTAGG	1 cut(s)	692
XmnI	GAANNNNTTC	1 cut(s)	306
XspI	CTAG	2 cut(s)	192, 693

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.