Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0005487

Physical Location & Seq

Genomic Coordinates Reverse (-)

7645742 .. 7648397

Gene Structure 2656 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g12743.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGGATAATGTGTACAAGGTGACTCTCGATCCATCGAGTAATGCAGAGAACGGTGTTTTTGATCTAACAACTGAAGCTTTAAATCTGACTCTTGATGGTTATGCAGGCTTGCTGTTTTGTATTTGTATAAGGAGAAGGCAATGTGAAAGCTTGGATAGGGCAATTGTGCAGGGTTCTGTTATGATTTTTGGAACATCTTACATAAATTCAAGGAAACATGGCAATTTTGTGGAAAAAGGACTTCATGGCGGTTGTACCGTAACTTCCCTCGGCCTCGCCGCCCTCCGCCTTGACATCTCTAACCCTAACCTCGTCTGCGCCTTCCTCTACTCCAACACCACCCTCCTCCTCACCATCCCCAACGCGTTGGTCCTACCTCTCGCCACCAACCGCACCAACGCCCTCCGGTTTGGTTTCAAGACCTCTCTCCCTCACTCCTCCACCGACCCCGACACCAATGGAACGGCGTTGTTAGCTCCGCCTCCACTTCTTCCTCCGGCAACGGTGAAGAAGAAGTCGTTCGCGGTTGCGACGAGGGAGTTGTTCCCTAGGCCTGGCGTCGACGGAAACTCCAGGAAGTTCTCCAATGAGAGAATCGGGAAGGTGATGGAGGATGAAATTCAGCCGGGAGTGGTTTGGGAGCAGCGCGTGAAGGATGTGGAGGCGGAGAAAGAGAGACGCGTGATTACTAGTCTCGGCTTTAGTTTTTCTGCGGCGGGGCTTCTTTTCCCTTATCATTTAGGTACTGCTCAATTCTTAATTGAGAATGGCTATATCAAGGTTCTTCAATTTTCGCCCCATTATGTTTTCATTTTCTTTATGAATGTTGCTCAATTTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

281

Amino Acids

30.85

Weight (kDa)

8.25

Isoelectric Point (pI)

28.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005487)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33270 AT1G33270
fragaria_vesca	FvH4_3g12743 FvH4_3g29702 FvH4_4g06881 FvH4_4g16550 FvH4_5g19441 FvH4_5g29680 FvH4_5g29680 FvH4_5g29680 FvH4_5g29680 FvH4_6g34462 FvH4_6g34463
malus_domestica	MD15G1421100.v1.1
prunus_persica	Prupe.1G566300_v2.0.a1 Prupe.1G566300_v2.0.a1
pyrus_communis	pycom15g37340
rosa_chinensis	RchiOBHm_Chr7g0223001
rosa_laevigata	RLG00000002004
rosa_multiflora	Rmu_sc0006373.1_g000001 Rmu_sc0006514.1_g000023
rosa_roxburghii	Rroxscaffold_3G00236360
rosa_rugosa	Rorug07G0212600 Rorug07G0212700
rosa_samantha	Rh7AG357800 Rh7BG346000 Rh7CG375900 Rh7DG352700
rosa_wichuraiana	Rw7G030430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	561
AccII	CGCG	4 cut(s)	365, 524, 648, 681
AciI	CCGC	9 cut(s)	249, 279, 286, 391, 479, 524, 665, 713, 716
AclWI	GGATC	1 cut(s)	23
AcsI	RAATTY	2 cut(s)	205, 618
AcuI	CTGAAG	1 cut(s)	93
AcyI	GRCGYC	1 cut(s)	558
AfaI	GTAC	3 cut(s)	14, 256, 745
AfiI	CCNNNNNNNGG	1 cut(s)	554
AflIII	ACRYGT	2 cut(s)	363, 679
AgsI	TTSAA	3 cut(s)	210, 418, 788
AhlI	ACTAGT	1 cut(s)	689
AjnI	CCWGG	2 cut(s)	553, 572
AluBI	AGCT	3 cut(s)	77, 150, 476
AluI	AGCT	3 cut(s)	77, 150, 476
Alw26I	GTCTC	2 cut(s)	670, 698
AlwI	GGATC	1 cut(s)	23
AoxI	GGCC	2 cut(s)	271, 551
ApeKI	GCWGC	1 cut(s)	643
ApoI	RAATTY	2 cut(s)	205, 618
Asp700I	GAANNNNTTC	1 cut(s)	518
AspA2I	CCTAGG	1 cut(s)	548
AspLEI	GCGC	2 cut(s)	320, 648
AspS9I	GGNCC	1 cut(s)	370
AsuC2I	CCSGG	1 cut(s)	627
AsuHPI	GGTGA	4 cut(s)	31, 343, 517, 616
AvaII	GGWCC	1 cut(s)	370
AvrII	CCTAGG	1 cut(s)	548
BarI	GAAGNNNNNNTAC	2 cut(s)	247, 279
BbvI	GCAGC	1 cut(s)	655
BccI	CCATC	4 cut(s)	40, 89, 362, 601
BceAI	ACGGC	1 cut(s)	480
BciT130I	CCWGG	2 cut(s)	555, 574
BcnI	CCSGG	1 cut(s)	627
BcoDI	GTCTC	2 cut(s)	670, 698
BcuI	ACTAGT	1 cut(s)	689
BfaI	CTAG	2 cut(s)	549, 690
BisI	GCNGC	3 cut(s)	279, 644, 714
BlnI	CCTAGG	1 cut(s)	548
BlsI	GCNGC	3 cut(s)	280, 645, 715
Bme1390I	CCNGG	3 cut(s)	555, 574, 627
Bme18I	GGWCC	1 cut(s)	370
BmgT120I	GGNCC	1 cut(s)	370
BmrFI	CCNGG	3 cut(s)	555, 574, 627
BpmI	CTGGAG	1 cut(s)	556
BpuMI	CCSGG	1 cut(s)	627
BsaHI	GRCGYC	1 cut(s)	558
BsaJI	CCNNGG	2 cut(s)	268, 548
BsaWI	WCCGGW	1 cut(s)	405
BsaXI	ACNNNNNCTCC	2 cut(s)	554, 584
Bsc4I	CCNNNNNNNGG	1 cut(s)	554
Bse3DI	GCAATG	1 cut(s)	146
BseBI	CCWGG	2 cut(s)	555, 574
BseDI	CCNNGG	2 cut(s)	268, 548
BseGI	GGATG	3 cut(s)	354, 619, 661
BseLI	CCNNNNNNNGG	1 cut(s)	554
BseMI	GCAATG	1 cut(s)	146
BseRI	GAGGAG	3 cut(s)	335, 338, 427
BseXI	GCAGC	1 cut(s)	655
BsgI	GTGCAG	1 cut(s)	188
Bsh1236I	CGCG	4 cut(s)	365, 524, 648, 681
BshFI	GGCC	2 cut(s)	273, 553
BsiSI	CCGG	3 cut(s)	406, 497, 626
BslI	CCNNNNNNNGG	1 cut(s)	554
BsmAI	GTCTC	2 cut(s)	670, 698
BsmBI	CGTCTC	1 cut(s)	670
BsnI	GGCC	2 cut(s)	273, 553
Bsp1407I	TGTACA	1 cut(s)	12
Bsp143I	GATC	2 cut(s)	28, 61
BspACI	CCGC	9 cut(s)	249, 279, 286, 391, 479, 524, 665, 713, 716
BspANI	GGCC	2 cut(s)	273, 553
BspFNI	CGCG	4 cut(s)	365, 524, 648, 681
BspPI	GGATC	1 cut(s)	23
BsrDI	GCAATG	1 cut(s)	146
BsrGI	TGTACA	1 cut(s)	12
BssECI	CCNNGG	2 cut(s)	268, 548
BssMI	GATC	2 cut(s)	28, 61
BssNI	GRCGYC	1 cut(s)	558
BssT1I	CCWWGG	1 cut(s)	548
Bst2UI	CCWGG	2 cut(s)	555, 574
Bst4CI	ACNGT	3 cut(s)	53, 259, 505
BstACI	GRCGYC	1 cut(s)	558
BstAUI	TGTACA	1 cut(s)	12
BstC8I	GCNNGC	2 cut(s)	106, 110
BstF5I	GGATG	3 cut(s)	354, 619, 661
BstFNI	CGCG	4 cut(s)	365, 524, 648, 681
BstHHI	GCGC	2 cut(s)	320, 648
BstKTI	GATC	2 cut(s)	31, 64
BstMAI	GTCTC	2 cut(s)	670, 698
BstMBI	GATC	2 cut(s)	28, 61
BstMWI	GCNNNNNNNGC	1 cut(s)	473
BstNI	CCWGG	2 cut(s)	555, 574
BstSCI	CCNGG	3 cut(s)	553, 572, 625
BstUI	CGCG	4 cut(s)	365, 524, 648, 681
BstV1I	GCAGC	1 cut(s)	655
BstXI	CCANNNNNNTGG	1 cut(s)	367
BsuRI	GGCC	2 cut(s)	273, 553
BtsCI	GGATG	3 cut(s)	354, 619, 661
Cac8I	GCNNGC	2 cut(s)	106, 110
CfoI	GCGC	2 cut(s)	320, 648
Cfr13I	GGNCC	1 cut(s)	370
CseI	GACGC	2 cut(s)	547, 687
Csp6I	GTAC	3 cut(s)	13, 255, 744
CviAII	CATG	2 cut(s)	218, 245
CviQI	GTAC	3 cut(s)	13, 255, 744
DpnI	GATC	2 cut(s)	30, 63
DpnII	GATC	2 cut(s)	28, 61
DraI	TTTAAA	1 cut(s)	81
EciI	GGCGGA	3 cut(s)	275, 468, 680
Eco130I	CCWWGG	1 cut(s)	548
Eco147I	AGGCCT	1 cut(s)	553
Eco47I	GGWCC	1 cut(s)	370
Eco57I	CTGAAG	1 cut(s)	93
EcoRII	CCWGG	2 cut(s)	553, 572
EcoT14I	CCWWGG	1 cut(s)	548
ErhI	CCWWGG	1 cut(s)	548
Esp3I	CGTCTC	1 cut(s)	670
FaeI	CATG	2 cut(s)	221, 248
FaiI	YATR	9 cut(s)	102, 128, 182, 203, 219, 246, 774, 804, 821
FatI	CATG	2 cut(s)	217, 244
FauI	CCCGC	1 cut(s)	709
FblI	GTMKAC	1 cut(s)	561
Fnu4HI	GCNGC	3 cut(s)	279, 644, 714
FokI	GGATG	3 cut(s)	341, 626, 668
Fsp4HI	GCNGC	3 cut(s)	279, 644, 714
FspBI	CTAG	2 cut(s)	549, 690
GlaI	GCGC	2 cut(s)	319, 647
GluI	GCNGC	3 cut(s)	279, 644, 714
GsuI	CTGGAG	1 cut(s)	556
HaeIII	GGCC	2 cut(s)	273, 553
HapII	CCGG	3 cut(s)	406, 497, 626
HgaI	GACGC	2 cut(s)	547, 687
HhaI	GCGC	2 cut(s)	320, 648
Hin1I	GRCGYC	1 cut(s)	558
Hin1II	CATG	2 cut(s)	221, 248
Hin6I	GCGC	2 cut(s)	318, 646
HinP1I	GCGC	2 cut(s)	318, 646
HincII	GTYRAC	1 cut(s)	562
HindII	GTYRAC	1 cut(s)	562
HindIII	AAGCTT	2 cut(s)	75, 148
HinfI	GANTC	3 cut(s)	22, 88, 594
HpaII	CCGG	3 cut(s)	406, 497, 626
HphI	GGTGA	4 cut(s)	31, 343, 517, 616
Hpy166II	GTNNAC	2 cut(s)	13, 562
Hpy188I	TCNGA	1 cut(s)	87
Hpy188III	TCNNGA	4 cut(s)	26, 92, 418, 598
Hpy8I	GTNNAC	2 cut(s)	13, 562
Hpy99I	CGWCG	3 cut(s)	535, 563, 566
HpyAV	CCTTC	4 cut(s)	129, 331, 595, 646
HpyCH4III	ACNGT	3 cut(s)	53, 259, 505
HpyCH4V	TGCA	3 cut(s)	44, 104, 169
HpyF10VI	GCNNNNNNNGC	1 cut(s)	473
Hsp92I	GRCGYC	1 cut(s)	558
Hsp92II	CATG	2 cut(s)	221, 248
HspAI	GCGC	2 cut(s)	318, 646
Kzo9I	GATC	2 cut(s)	28, 61
LmnI	GCTCC	2 cut(s)	481, 640
LpnPI	CCDG	9 cut(s)	90, 155, 419, 510, 540, 559, 567, 586, 639
Lsp1109I	GCAGC	1 cut(s)	655
MaeI	CTAG	2 cut(s)	549, 690
MaeIII	GTNAC	2 cut(s)	19, 259
MalI	GATC	2 cut(s)	30, 63
MboI	GATC	2 cut(s)	28, 61
MboII	GAAGA	4 cut(s)	482, 520, 523, 776
MfeI	CAATTG	1 cut(s)	162
MluCI	AATT	8 cut(s)	162, 205, 223, 618, 752, 759, 788, 833
MluI	ACGCGT	2 cut(s)	363, 679
MlyI	GAGTC	2 cut(s)	16, 82
MmeI	TCCRAC	1 cut(s)	357
MroXI	GAANNNNTTC	1 cut(s)	518
MseI	TTAA	2 cut(s)	80, 758
MspI	CCGG	3 cut(s)	406, 497, 626
MspR9I	CCNGG	3 cut(s)	555, 574, 627
MunI	CAATTG	1 cut(s)	162
MvaI	CCWGG	2 cut(s)	555, 574
MvnI	CGCG	4 cut(s)	365, 524, 648, 681
MwoI	GCNNNNNNNGC	1 cut(s)	473
NciI	CCSGG	1 cut(s)	627
NdeII	GATC	2 cut(s)	28, 61
NlaIII	CATG	2 cut(s)	221, 248
NmeAIII	GCCGAG	2 cut(s)	249, 675
NmuCI	GTSAC	1 cut(s)	19
PceI	AGGCCT	1 cut(s)	553
PdmI	GAANNNNTTC	1 cut(s)	518
PfeI	GAWTC	1 cut(s)	594
PfoI	TCCNGGA	1 cut(s)	572
PkrI	GCNGC	3 cut(s)	280, 645, 715
PleI	GAGTC	2 cut(s)	16, 82
PpsI	GAGTC	2 cut(s)	16, 82
Psp6I	CCWGG	2 cut(s)	553, 572
PspGI	CCWGG	2 cut(s)	553, 572
PspPI	GGNCC	1 cut(s)	370
RsaI	GTAC	3 cut(s)	14, 256, 745
RsaNI	GTAC	3 cut(s)	13, 255, 744
SalI	GTCGAC	1 cut(s)	560
SaqAI	TTAA	2 cut(s)	80, 758
SatI	GCNGC	3 cut(s)	279, 644, 714
Sau3AI	GATC	2 cut(s)	28, 61
Sau96I	GGNCC	1 cut(s)	370
SchI	GAGTC	2 cut(s)	16, 82
ScrFI	CCNGG	3 cut(s)	555, 574, 627
SgrDI	CGTCGACG	1 cut(s)	560
SinI	GGWCC	1 cut(s)	370
SpeI	ACTAGT	1 cut(s)	689
Sse9I	AATT	8 cut(s)	162, 205, 223, 618, 752, 759, 788, 833
SseBI	AGGCCT	1 cut(s)	553
SsiI	CCGC	9 cut(s)	249, 279, 286, 391, 479, 524, 665, 713, 716
SspMI	CTAG	2 cut(s)	549, 690
StuI	AGGCCT	1 cut(s)	553
StyD4I	CCNGG	3 cut(s)	553, 572, 625
StyI	CCWWGG	1 cut(s)	548
TaaI	ACNGT	3 cut(s)	53, 259, 505
TaqI	TCGA	3 cut(s)	27, 35, 561
TasI	AATT	8 cut(s)	162, 205, 223, 618, 752, 759, 788, 833
TatI	WGTACW	1 cut(s)	12
TauI	GCSGC	2 cut(s)	281, 716
TfiI	GAWTC	1 cut(s)	594
Tru1I	TTAA	2 cut(s)	80, 758
Tru9I	TTAA	2 cut(s)	80, 758
TseFI	GTSAC	1 cut(s)	19
TseI	GCWGC	1 cut(s)	643
Tsp45I	GTSAC	1 cut(s)	19
TspDTI	ATGAA	4 cut(s)	233, 630, 799, 836
TspGWI	ACGGA	1 cut(s)	579
VpaK11BI	GGWCC	1 cut(s)	370
XapI	RAATTY	2 cut(s)	205, 618
XmaJI	CCTAGG	1 cut(s)	548
XmiI	GTMKAC	1 cut(s)	561
XmnI	GAANNNNTTC	1 cut(s)	518
XspI	CTAG	2 cut(s)	549, 690

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.