Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0005487

Physical Location & Seq

Genomic Coordinates Forward (+)

47002363 .. 47007241

Gene Structure 4879 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG352700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGTTTCGGAGGAAACTAACTGGAGCCTCGTCTTCATCGTCCTCACCACTCATGGCTCCCTACTCCTCTCTCCTCCTCCGTCCTCAACCTCACCCCTTCTCTCTCTCCACCATCAACCCCAACCCTAACCCCAACCCTAATCTCATCAACCGCTACACCTTACTCCCTCTCCGCACCGTAAACCTGAAGTCCTCTCTCCCGCGCTCTTCATCTGACCCCGACACCAATCGCACGGCGGCGTCGTCGGCTTCATCTCCACCTCCACCGCCTCCGACGACGAAGAAGTCGTTTGCTGTTGCGACGGGGGAGTTGTTCTTGGGCCTGGCGACTAGGATCATCAAGCGGCGCAATGGAGGCCCGGACCGTGACGCGGCGGCCTCCGTCGCCATGTTTGAGAGCTCCGGCAAGTTCTCCGATGAGAGAATTGGGAAGGTGATTGAGGATGAGCTTCAGCCGGAGGTCGTTTGGGAGCAGCGCGTGAAGGATGTGGAGGCTGAGAAAGAGAGGCGCGTGATTACAAGTCCCGGCTTTAGTTTCTCCGCTGCGGGACTTCTTTTCCCTTACCATCTAGGTGCTGCTCAGTTCTTGATTGAGAATGGCTATATCAAGGAAACCACTCCATTAGCTGGTTCCTCTGCAGGTGCCATTGTCTGTGCTGTGATTGCCTCTGGAGCAAGTATGGCAGAGGCCTTACAAGCTACTAAAATTCTGGCTGAAGATTGCCGGAACAGAGGGACAGCTTTTCGACTTGGGGCTGTTCTTCGAGATGTTCTCCAAAAGTTTTTGCCTGAGGATGCTCATATTAGGTCTAATGGGAGGGTTAGAGGTAAGTGGTATTCTTGCTCCCTAAACAAAAAGAATATTTTTACATCGATGTTTAATGGTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004806 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005811 GO:0005829 GO:0005886 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0006996 GO:0008150 GO:0008152 GO:0009056 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010876 GO:0010883 GO:0010888 GO:0010889 GO:0010891 GO:0010896 GO:0010898 GO:0016020 GO:0016042 GO:0016043 GO:0016298 GO:0016787 GO:0016788 GO:0019216 GO:0019222 GO:0019433 GO:0019915 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031974 GO:0031981 GO:0032879 GO:0033036 GO:0034389 GO:0042592 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045834 GO:0046461 GO:0046464 GO:0046486 GO:0046503 GO:0048518 GO:0048519 GO:0048522 GO:0048878 GO:0050789 GO:0050794 GO:0050994 GO:0050996 GO:0051179 GO:0051235 GO:0052689 GO:0055088 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0090207 GO:0090208 GO:1901575 GO:1905952 GO:1905953

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Patatin

Protein Analysis

296

Amino Acids

32.04

Weight (kDa)

9.84

Isoelectric Point (pI)

51.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Patatin	PF01734	178 - 271	6.3e-08	Patatin-like phospholipase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005487)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33270 AT1G33270
fragaria_vesca	FvH4_3g12743 FvH4_3g29702 FvH4_4g06881 FvH4_4g16550 FvH4_5g19441 FvH4_5g29680 FvH4_5g29680 FvH4_5g29680 FvH4_5g29680 FvH4_6g34462 FvH4_6g34463
malus_domestica	MD15G1421100.v1.1
prunus_persica	Prupe.1G566300_v2.0.a1 Prupe.1G566300_v2.0.a1
pyrus_communis	pycom15g37340
rosa_chinensis	RchiOBHm_Chr7g0223001
rosa_laevigata	RLG00000002004
rosa_multiflora	Rmu_sc0006373.1_g000001 Rmu_sc0006514.1_g000023
rosa_roxburghii	Rroxscaffold_3G00236360
rosa_rugosa	Rorug07G0212600 Rorug07G0212700
rosa_samantha	Rh7AG357800 Rh7BG346000 Rh7CG375900 Rh7DG352700
rosa_wichuraiana	Rw7G030430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	629
AasI	GACNNNNNNGTC	1 cut(s)	283
Acc36I	ACCTGC	1 cut(s)	629
AccB1I	GGYRCC	1 cut(s)	641
AccB7I	CCANNNNNTGG	1 cut(s)	626
AccII	CGCG	4 cut(s)	202, 371, 477, 510
AclWI	GGATC	1 cut(s)	341
AcsI	RAATTY	1 cut(s)	705
AcuI	CTGAAG	3 cut(s)	206, 434, 735
AcyI	GRCGYC	1 cut(s)	239
AfiI	CCNNNNNNNGG	2 cut(s)	370, 626
AjnI	CCWGG	1 cut(s)	321
AluBI	AGCT	5 cut(s)	399, 448, 626, 698, 740
AluI	AGCT	5 cut(s)	399, 448, 626, 698, 740
Alw21I	GWGCWC	1 cut(s)	401
AlwI	GGATC	1 cut(s)	341
AoxI	GGCC	4 cut(s)	319, 355, 375, 687
ApeKI	GCWGC	3 cut(s)	472, 542, 575
ApoI	RAATTY	1 cut(s)	705
AspLEI	GCGC	4 cut(s)	204, 348, 477, 510
AspS9I	GGNCC	3 cut(s)	319, 356, 361
AsuC2I	CCSGG	2 cut(s)	359, 525
AsuHPI	GGTGA	3 cut(s)	36, 83, 445
AvaII	GGWCC	1 cut(s)	361
AxyI	CCTNAGG	1 cut(s)	789
BanI	GGYRCC	1 cut(s)	641
BanII	GRGCYC	1 cut(s)	401
BbsI	GAAGAC	1 cut(s)	24
Bbv12I	GWGCWC	1 cut(s)	401
BbvI	GCAGC	3 cut(s)	484, 529, 562
BccI	CCATC	2 cut(s)	119, 573
BceAI	ACGGC	1 cut(s)	249
BciT130I	CCWGG	1 cut(s)	323
BcnI	CCSGG	2 cut(s)	359, 525
BfaI	CTAG	2 cut(s)	330, 569
BfmI	CTRYAG	1 cut(s)	636
BfuAI	ACCTGC	1 cut(s)	629
BisI	GCNGC	7 cut(s)	237, 344, 372, 375, 473, 543, 576
BlsI	GCNGC	7 cut(s)	238, 345, 373, 376, 474, 544, 577
Bme1390I	CCNGG	3 cut(s)	323, 359, 525
Bme18I	GGWCC	1 cut(s)	361
BmgT120I	GGNCC	3 cut(s)	319, 356, 361
BmiI	GGNNCC	4 cut(s)	25, 57, 631, 643
BmrFI	CCNGG	3 cut(s)	323, 359, 525
BmsI	GCATC	1 cut(s)	784
BpiI	GAAGAC	1 cut(s)	24
BplI	GAGNNNNNCTC	2 cut(s)	756, 788
BpmI	CTGGAG	2 cut(s)	42, 690
BpuMI	CCSGG	2 cut(s)	359, 525
Bsa29I	ATCGAT	1 cut(s)	872
BsaHI	GRCGYC	1 cut(s)	239
BsaXI	ACNNNNNCTCC	2 cut(s)	153, 183
Bsc4I	CCNNNNNNNGG	2 cut(s)	370, 626
Bse1I	ACTGG	1 cut(s)	25
Bse21I	CCTNAGG	1 cut(s)	789
Bse3DI	GCAATG	1 cut(s)	355
BseBI	CCWGG	1 cut(s)	323
BseCI	ATCGAT	1 cut(s)	872
BseGI	GGATG	3 cut(s)	448, 490, 799
BseLI	CCNNNNNNNGG	2 cut(s)	370, 626
BseMI	GCAATG	1 cut(s)	355
BseMII	CTCAG	3 cut(s)	486, 593, 780
BseNI	ACTGG	1 cut(s)	25
BseRI	GAGGAG	3 cut(s)	55, 62, 65
BseXI	GCAGC	3 cut(s)	484, 529, 562
Bsh1236I	CGCG	4 cut(s)	202, 371, 477, 510
BshFI	GGCC	4 cut(s)	321, 357, 377, 689
BshNI	GGYRCC	1 cut(s)	641
BshVI	ATCGAT	1 cut(s)	872
BsiHKAI	GWGCWC	1 cut(s)	401
BsiSI	CCGG	5 cut(s)	359, 402, 455, 525, 724
BslFI	GGGAC	3 cut(s)	507, 561, 748
BslI	CCNNNNNNNGG	2 cut(s)	370, 626
BsmFI	GGGAC	3 cut(s)	507, 561, 748
BsnI	GGCC	4 cut(s)	321, 357, 377, 689
Bsp1286I	GDGCHC	1 cut(s)	401
Bsp143I	GATC	1 cut(s)	333
BspANI	GGCC	4 cut(s)	321, 357, 377, 689
BspCNI	CTCAG	3 cut(s)	487, 592, 781
BspDI	ATCGAT	1 cut(s)	872
BspFNI	CGCG	4 cut(s)	202, 371, 477, 510
BspLI	GGNNCC	4 cut(s)	25, 57, 631, 643
BspMAI	CTGCAG	1 cut(s)	640
BspMI	ACCTGC	1 cut(s)	629
BspPI	GGATC	1 cut(s)	341
BspQI	GCTCTTC	1 cut(s)	211
BspT107I	GGYRCC	1 cut(s)	641
BsrDI	GCAATG	1 cut(s)	355
BsrI	ACTGG	1 cut(s)	25
BssMI	GATC	1 cut(s)	333
BssNI	GRCGYC	1 cut(s)	239
Bst2UI	CCWGG	1 cut(s)	323
Bst4CI	ACNGT	2 cut(s)	178, 365
Bst6I	CTCTTC	1 cut(s)	211
BstACI	GRCGYC	1 cut(s)	239
BstDEI	CTNAG	3 cut(s)	495, 579, 789
BstF5I	GGATG	3 cut(s)	448, 490, 799
BstFNI	CGCG	4 cut(s)	202, 371, 477, 510
BstHHI	GCGC	4 cut(s)	204, 348, 477, 510
BstKTI	GATC	1 cut(s)	336
BstMBI	GATC	1 cut(s)	333
BstMWI	GCNNNNNNNGC	7 cut(s)	245, 354, 383, 662, 671, 680, 695
BstNI	CCWGG	1 cut(s)	323
BstSCI	CCNGG	3 cut(s)	321, 357, 523
BstSFI	CTRYAG	1 cut(s)	636
BstUI	CGCG	4 cut(s)	202, 371, 477, 510
BstV1I	GCAGC	3 cut(s)	484, 529, 562
BstV2I	GAAGAC	1 cut(s)	24
Bsu15I	ATCGAT	1 cut(s)	872
Bsu36I	CCTNAGG	1 cut(s)	789
BsuRI	GGCC	4 cut(s)	321, 357, 377, 689
BsuTUI	ATCGAT	1 cut(s)	872
BtsCI	GGATG	3 cut(s)	448, 490, 799
BveI	ACCTGC	1 cut(s)	629
CfoI	GCGC	4 cut(s)	204, 348, 477, 510
Cfr13I	GGNCC	3 cut(s)	319, 356, 361
ClaI	ATCGAT	1 cut(s)	872
CpoI	CGGWCCG	1 cut(s)	361
CseI	GACGC	2 cut(s)	228, 377
CspI	CGGWCCG	1 cut(s)	361
CviAII	CATG	2 cut(s)	52, 388
DdeI	CTNAG	3 cut(s)	495, 579, 789
DpnI	GATC	1 cut(s)	335
DpnII	GATC	1 cut(s)	333
DrdI	GACNNNNNNGTC	1 cut(s)	283
DseDI	GACNNNNNNGTC	1 cut(s)	283
Eam1104I	CTCTTC	1 cut(s)	211
EarI	CTCTTC	1 cut(s)	211
Ecl136II	GAGCTC	1 cut(s)	399
Eco147I	AGGCCT	1 cut(s)	689
Eco24I	GRGCYC	1 cut(s)	401
Eco47I	GGWCC	1 cut(s)	361
Eco53kI	GAGCTC	1 cut(s)	399
Eco57I	CTGAAG	3 cut(s)	206, 434, 735
Eco81I	CCTNAGG	1 cut(s)	789
EcoICRI	GAGCTC	1 cut(s)	399
EcoRII	CCWGG	1 cut(s)	321
EcoT38I	GRGCYC	1 cut(s)	401
FaeI	CATG	2 cut(s)	55, 391
FaiI	YATR	5 cut(s)	53, 389, 603, 680, 801
FaqI	GGGAC	3 cut(s)	507, 561, 748
FatI	CATG	2 cut(s)	51, 387
FauI	CCCGC	2 cut(s)	207, 538
Fnu4HI	GCNGC	7 cut(s)	237, 344, 372, 375, 473, 543, 576
FokI	GGATG	3 cut(s)	455, 497, 806
FriOI	GRGCYC	1 cut(s)	401
Fsp4HI	GCNGC	7 cut(s)	237, 344, 372, 375, 473, 543, 576
FspBI	CTAG	2 cut(s)	330, 569
GlaI	GCGC	4 cut(s)	203, 347, 476, 509
GluI	GCNGC	7 cut(s)	237, 344, 372, 375, 473, 543, 576
GsuI	CTGGAG	2 cut(s)	42, 690
HaeIII	GGCC	4 cut(s)	321, 357, 377, 689
HapII	CCGG	5 cut(s)	359, 402, 455, 525, 724
HgaI	GACGC	2 cut(s)	228, 377
HhaI	GCGC	4 cut(s)	204, 348, 477, 510
Hin1I	GRCGYC	1 cut(s)	239
Hin1II	CATG	2 cut(s)	55, 391
Hin6I	GCGC	4 cut(s)	202, 346, 475, 508
HinP1I	GCGC	4 cut(s)	202, 346, 475, 508
HpaII	CCGG	5 cut(s)	359, 402, 455, 525, 724
HphI	GGTGA	3 cut(s)	36, 83, 445
Hpy166II	GTNNAC	1 cut(s)	181
Hpy188I	TCNGA	4 cut(s)	9, 214, 273, 415
Hpy188III	TCNNGA	3 cut(s)	586, 669, 764
Hpy8I	GTNNAC	1 cut(s)	181
Hpy99I	CGWCG	6 cut(s)	244, 247, 277, 280, 304, 386
HpyAV	CCTTC	3 cut(s)	106, 424, 475
HpyCH4III	ACNGT	2 cut(s)	178, 365
HpyCH4V	TGCA	1 cut(s)	638
HpyF10VI	GCNNNNNNNGC	7 cut(s)	245, 354, 383, 662, 671, 680, 695
HpyF3I	CTNAG	3 cut(s)	495, 579, 789
Hsp92I	GRCGYC	1 cut(s)	239
Hsp92II	CATG	2 cut(s)	55, 391
HspAI	GCGC	4 cut(s)	202, 346, 475, 508
Kzo9I	GATC	1 cut(s)	333
LguI	GCTCTTC	1 cut(s)	211
LmnI	GCTCC	6 cut(s)	23, 61, 404, 469, 671, 848
Lsp1109I	GCAGC	3 cut(s)	484, 529, 562
LweI	GCATC	1 cut(s)	784
MaeI	CTAG	2 cut(s)	330, 569
MaeIII	GTNAC	1 cut(s)	365
MalI	GATC	1 cut(s)	335
MboI	GATC	1 cut(s)	333
MboII	GAAGA	5 cut(s)	24, 198, 292, 728, 752
MhlI	GDGCHC	1 cut(s)	401
MluCI	AATT	2 cut(s)	423, 705
MmeI	TCCRAC	1 cut(s)	296
MseI	TTAA	1 cut(s)	879
MslI	CAYNNNNRTG	1 cut(s)	570
MspA1I	CMGCKG	1 cut(s)	542
MspI	CCGG	5 cut(s)	359, 402, 455, 525, 724
MspR9I	CCNGG	3 cut(s)	323, 359, 525
MvaI	CCWGG	1 cut(s)	323
MvnI	CGCG	4 cut(s)	202, 371, 477, 510
MwoI	GCNNNNNNNGC	7 cut(s)	245, 354, 383, 662, 671, 680, 695
NciI	CCSGG	2 cut(s)	359, 525
NdeII	GATC	1 cut(s)	333
NlaIII	CATG	2 cut(s)	55, 391
NlaIV	GGNNCC	4 cut(s)	25, 57, 631, 643
NmuCI	GTSAC	1 cut(s)	365
PaqCI	CACCTGC	1 cut(s)	629
PceI	AGGCCT	1 cut(s)	689
PciSI	GCTCTTC	1 cut(s)	211
PcsI	WCGNNNNNNNCGW	3 cut(s)	35, 239, 284
PflMI	CCANNNNNTGG	1 cut(s)	626
PkrI	GCNGC	7 cut(s)	238, 345, 373, 376, 474, 544, 577
Psp124BI	GAGCTC	1 cut(s)	401
Psp6I	CCWGG	1 cut(s)	321
PspGI	CCWGG	1 cut(s)	321
PspN4I	GGNNCC	4 cut(s)	25, 57, 631, 643
PspPI	GGNCC	3 cut(s)	319, 356, 361
PstI	CTGCAG	1 cut(s)	640
RseI	CAYNNNNRTG	1 cut(s)	570
Rsr2I	CGGWCCG	1 cut(s)	361
RsrII	CGGWCCG	1 cut(s)	361
SacI	GAGCTC	1 cut(s)	401
SapI	GCTCTTC	1 cut(s)	211
SaqAI	TTAA	1 cut(s)	879
SatI	GCNGC	7 cut(s)	237, 344, 372, 375, 473, 543, 576
Sau3AI	GATC	1 cut(s)	333
Sau96I	GGNCC	3 cut(s)	319, 356, 361
ScrFI	CCNGG	3 cut(s)	323, 359, 525
SduI	GDGCHC	1 cut(s)	401
SfaNI	GCATC	1 cut(s)	784
SfcI	CTRYAG	1 cut(s)	636
SinI	GGWCC	1 cut(s)	361
SmiMI	CAYNNNNRTG	1 cut(s)	570
Sse9I	AATT	2 cut(s)	423, 705
SseBI	AGGCCT	1 cut(s)	689
SspI	AATATT	1 cut(s)	862
SspMI	CTAG	2 cut(s)	330, 569
SstI	GAGCTC	1 cut(s)	401
StuI	AGGCCT	1 cut(s)	689
StyD4I	CCNGG	3 cut(s)	321, 357, 523
TaaI	ACNGT	2 cut(s)	178, 365
TaqI	TCGA	3 cut(s)	745, 763, 872
TasI	AATT	2 cut(s)	423, 705
TauI	GCSGC	4 cut(s)	239, 346, 374, 377
Tru1I	TTAA	1 cut(s)	879
Tru9I	TTAA	1 cut(s)	879
TseFI	GTSAC	1 cut(s)	365
TseI	GCWGC	3 cut(s)	472, 542, 575
Tsp45I	GTSAC	1 cut(s)	365
TspDTI	ATGAA	3 cut(s)	24, 198, 240
TspGWI	ACGGA	2 cut(s)	68, 370
Van91I	CCANNNNNTGG	1 cut(s)	626
VpaK11BI	GGWCC	1 cut(s)	361
XapI	RAATTY	1 cut(s)	705
XspI	CTAG	2 cut(s)	330, 569

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.