Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0005487

Physical Location & Seq

Genomic Coordinates Forward (+)

20455803 .. 20457086

Gene Structure 1284 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g16550.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGGCGAAGAGTGTAGCCATGGCTTCCCACTTTTCTCTCTCCGCTGTTTCCCCCTCCTCTTCCTCGCTGCAACCGCCTCGCCGGACGCCGCCTCCTCCACCACCATCGGCGTCACCTATTCCGCCTCCACTGTTGCCACCTACCCCACCCCTCCACTACCGGAGCATGTGGCCTCGACCGTAACTTCCCTCGGCCTCGCCGCCCTCCGCCTTGACATCTCTGACCCCAACCTCGTCCGCGCCTTCCTCTATTCCAGCACCACCCTCCTCCTCACCATCCCCAACGTGCTGGTCCCATCTCTCGCCACCAACCGCACCAACGCCCTCCGGTTTGGTTTCAAGAGATCTCCCTCACTCCTCCGGTTTGGTTTAAAGATTCGTCTTGGTTTCAAGACCTCTCTCCCTCACTCCTCCACCGACCCCGACACCAATGGAACGACGTCGTCAGCTCCGCCTCCACTTCCTCCTTCGGCAACGGCGATGAAGAAGTGGTTTGCGGTTGCGATGGGGGAGTTGTTCCTTGGGCCTGGCGTTGACAAAAACTCCGGGAAGTTCTCCGATGAGAGAATCGGGAAGGTGATGGAGGATGAGATTCAGCCGGGGGTGGTTTGGGAGCAGCGCGTGAAGGATATGGAGGCGGAGAAAGAGAGGCGCGTGATTACCAATCCCGACTTTAATTTTTCTACGGTGGGGCTTTTTTTCCCTTATCATTTAGGTGCTGCTCAGTTCTTGATTGAGAATGGCTATATCAAGGTTCTTCAATTTTCGCCCTATTATGTTTTCGTTTTCTCTATGAATGTTGTTCAATTTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004806 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005811 GO:0005829 GO:0005886 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0006996 GO:0008150 GO:0008152 GO:0009056 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010876 GO:0010883 GO:0010888 GO:0010889 GO:0010891 GO:0010896 GO:0010898 GO:0016020 GO:0016042 GO:0016043 GO:0016298 GO:0016787 GO:0016788 GO:0019216 GO:0019222 GO:0019433 GO:0019915 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031974 GO:0031981 GO:0032879 GO:0033036 GO:0034389 GO:0042592 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045834 GO:0046461 GO:0046464 GO:0046486 GO:0046503 GO:0048518 GO:0048519 GO:0048522 GO:0048878 GO:0050789 GO:0050794 GO:0050994 GO:0050996 GO:0051179 GO:0051235 GO:0052689 GO:0055088 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0090207 GO:0090208 GO:1901575 GO:1905952 GO:1905953

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Patatin

Protein Analysis

272

Amino Acids

29.64

Weight (kDa)

6.91

Isoelectric Point (pI)

32.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005487)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33270 AT1G33270
fragaria_vesca	FvH4_3g12743 FvH4_3g29702 FvH4_4g06881 FvH4_4g16550 FvH4_5g19441 FvH4_5g29680 FvH4_5g29680 FvH4_5g29680 FvH4_5g29680 FvH4_6g34462 FvH4_6g34463
malus_domestica	MD15G1421100.v1.1
prunus_persica	Prupe.1G566300_v2.0.a1 Prupe.1G566300_v2.0.a1
pyrus_communis	pycom15g37340
rosa_chinensis	RchiOBHm_Chr7g0223001
rosa_laevigata	RLG00000002004
rosa_multiflora	Rmu_sc0006373.1_g000001 Rmu_sc0006514.1_g000023
rosa_roxburghii	Rroxscaffold_3G00236360
rosa_rugosa	Rorug07G0212600 Rorug07G0212700
rosa_samantha	Rh7AG357800 Rh7BG346000 Rh7CG375900 Rh7DG352700
rosa_wichuraiana	Rw7G030430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	443
AccII	CGCG	3 cut(s)	240, 621, 654
AcyI	GRCGYC	3 cut(s)	87, 111, 440
AgsI	TTSAA	4 cut(s)	340, 391, 761, 806
AjnI	CCWGG	1 cut(s)	526
AluBI	AGCT	1 cut(s)	449
AluI	AGCT	1 cut(s)	449
AoxI	GGCC	3 cut(s)	171, 193, 524
ApeKI	GCWGC	3 cut(s)	68, 616, 719
AspLEI	GCGC	3 cut(s)	242, 621, 654
AspS9I	GGNCC	2 cut(s)	292, 524
AsuC2I	CCSGG	2 cut(s)	547, 600
AsuHPI	GGTGA	3 cut(s)	106, 265, 589
AvaII	GGWCC	1 cut(s)	292
BbvI	GCAGC	3 cut(s)	55, 628, 706
BccI	CCATC	5 cut(s)	113, 284, 304, 499, 574
BceAI	ACGGC	1 cut(s)	492
BcgI	CGANNNNNNTGC	2 cut(s)	60, 94
BciT130I	CCWGG	1 cut(s)	528
BcnI	CCSGG	2 cut(s)	547, 600
BglII	AGATCT	1 cut(s)	344
BisI	GCNGC	5 cut(s)	69, 90, 201, 617, 720
BlsI	GCNGC	5 cut(s)	70, 91, 202, 618, 721
Bme1390I	CCNGG	3 cut(s)	528, 547, 600
Bme18I	GGWCC	1 cut(s)	292
BmgT120I	GGNCC	2 cut(s)	292, 524
BmiI	GGNNCC	1 cut(s)	294
BmrFI	CCNGG	3 cut(s)	528, 547, 600
BpuMI	CCSGG	2 cut(s)	547, 600
BsaHI	GRCGYC	3 cut(s)	87, 111, 440
BsaJI	CCNNGG	4 cut(s)	19, 190, 520, 599
BsaWI	WCCGGW	3 cut(s)	160, 327, 360
BsaXI	ACNNNNNCTCC	4 cut(s)	77, 107, 527, 557
BseBI	CCWGG	1 cut(s)	528
BseDI	CCNNGG	4 cut(s)	19, 190, 520, 599
BseGI	GGATG	2 cut(s)	276, 592
BseMII	CTCAG	1 cut(s)	737
BseRI	GAGGAG	6 cut(s)	47, 85, 257, 260, 347, 400
BseXI	GCAGC	3 cut(s)	55, 628, 706
Bsh1236I	CGCG	3 cut(s)	240, 621, 654
Bsh1285I	CGRYCG	1 cut(s)	180
BshFI	GGCC	3 cut(s)	173, 195, 526
BsiEI	CGRYCG	1 cut(s)	180
BsiSI	CCGG	6 cut(s)	83, 161, 328, 361, 546, 599
BslFI	GGGAC	1 cut(s)	278
BsmFI	GGGAC	1 cut(s)	278
BsnI	GGCC	3 cut(s)	173, 195, 526
Bsp143I	GATC	1 cut(s)	344
Bsp19I	CCATGG	1 cut(s)	19
BspANI	GGCC	3 cut(s)	173, 195, 526
BspCNI	CTCAG	1 cut(s)	736
BspFNI	CGCG	3 cut(s)	240, 621, 654
BspLI	GGNNCC	1 cut(s)	294
BssECI	CCNNGG	4 cut(s)	19, 190, 520, 599
BssMI	GATC	1 cut(s)	344
BssNI	GRCGYC	3 cut(s)	87, 111, 440
BssT1I	CCWWGG	2 cut(s)	19, 520
Bst2UI	CCWGG	1 cut(s)	528
Bst4CI	ACNGT	3 cut(s)	133, 181, 688
Bst6I	CTCTTC	2 cut(s)	3, 65
BstACI	GRCGYC	3 cut(s)	87, 111, 440
BstDEI	CTNAG	1 cut(s)	723
BstDSI	CCRYGG	1 cut(s)	19
BstF5I	GGATG	2 cut(s)	276, 592
BstFNI	CGCG	3 cut(s)	240, 621, 654
BstHHI	GCGC	3 cut(s)	242, 621, 654
BstKTI	GATC	1 cut(s)	347
BstMBI	GATC	1 cut(s)	344
BstMCI	CGRYCG	1 cut(s)	180
BstMWI	GCNNNNNNNGC	1 cut(s)	74
BstNI	CCWGG	1 cut(s)	528
BstNSI	RCATGY	1 cut(s)	170
BstSCI	CCNGG	3 cut(s)	526, 545, 598
BstUI	CGCG	3 cut(s)	240, 621, 654
BstV1I	GCAGC	3 cut(s)	55, 628, 706
BstX2I	RGATCY	1 cut(s)	344
BstXI	CCANNNNNNTGG	1 cut(s)	289
BstYI	RGATCY	1 cut(s)	344
BsuRI	GGCC	3 cut(s)	173, 195, 526
BtgI	CCRYGG	1 cut(s)	19
BtgZI	GCGATG	2 cut(s)	494, 518
BtsCI	GGATG	2 cut(s)	276, 592
BtsIMutI	CAGTG	1 cut(s)	129
CfoI	GCGC	3 cut(s)	242, 621, 654
Cfr13I	GGNCC	2 cut(s)	292, 524
CseI	GACGC	2 cut(s)	95, 100
CviAII	CATG	2 cut(s)	20, 167
CviJI	RGCY	9 cut(s)	18, 24, 173, 195, 449, 526, 598, 694, 744
CviKI_1	RGCY	9 cut(s)	18, 24, 173, 195, 449, 526, 598, 694, 744
DdeI	CTNAG	1 cut(s)	723
DpnI	GATC	1 cut(s)	346
DpnII	GATC	1 cut(s)	344
DraI	TTTAAA	1 cut(s)	372
Eam1104I	CTCTTC	2 cut(s)	3, 65
EarI	CTCTTC	2 cut(s)	3, 65
EciI	GGCGGA	4 cut(s)	112, 197, 441, 653
Eco130I	CCWWGG	2 cut(s)	19, 520
Eco47I	GGWCC	1 cut(s)	292
EcoRII	CCWGG	1 cut(s)	526
EcoT14I	CCWWGG	2 cut(s)	19, 520
ErhI	CCWWGG	2 cut(s)	19, 520
FaeI	CATG	2 cut(s)	23, 170
FaiI	YATR	6 cut(s)	21, 168, 632, 747, 777, 794
FaqI	GGGAC	1 cut(s)	278
FatI	CATG	2 cut(s)	19, 166
Fnu4HI	GCNGC	5 cut(s)	69, 90, 201, 617, 720
FokI	GGATG	2 cut(s)	263, 599
Fsp4HI	GCNGC	5 cut(s)	69, 90, 201, 617, 720
GlaI	GCGC	3 cut(s)	241, 620, 653
GluI	GCNGC	5 cut(s)	69, 90, 201, 617, 720
HaeIII	GGCC	3 cut(s)	173, 195, 526
HapII	CCGG	6 cut(s)	83, 161, 328, 361, 546, 599
HgaI	GACGC	2 cut(s)	95, 100
HhaI	GCGC	3 cut(s)	242, 621, 654
Hin1I	GRCGYC	3 cut(s)	87, 111, 440
Hin1II	CATG	2 cut(s)	23, 170
Hin6I	GCGC	3 cut(s)	240, 619, 652
HinP1I	GCGC	3 cut(s)	240, 619, 652
HincII	GTYRAC	1 cut(s)	535
HindII	GTYRAC	1 cut(s)	535
HinfI	GANTC	3 cut(s)	376, 567, 592
HpaII	CCGG	6 cut(s)	83, 161, 328, 361, 546, 599
HphI	GGTGA	3 cut(s)	106, 265, 589
Hpy166II	GTNNAC	1 cut(s)	535
Hpy188I	TCNGA	2 cut(s)	223, 559
Hpy188III	TCNNGA	5 cut(s)	340, 391, 571, 668, 730
Hpy8I	GTNNAC	1 cut(s)	535
Hpy99I	CGWCG	2 cut(s)	442, 445
HpyAV	CCTTC	4 cut(s)	253, 477, 568, 619
HpyCH4III	ACNGT	3 cut(s)	133, 181, 688
HpyCH4IV	ACGT	2 cut(s)	285, 440
HpyCH4V	TGCA	1 cut(s)	71
HpyF10VI	GCNNNNNNNGC	1 cut(s)	74
HpyF3I	CTNAG	1 cut(s)	723
HpySE526I	ACGT	2 cut(s)	285, 440
Hsp92I	GRCGYC	3 cut(s)	87, 111, 440
Hsp92II	CATG	2 cut(s)	23, 170
HspAI	GCGC	3 cut(s)	240, 619, 652
Kzo9I	GATC	1 cut(s)	344
LmnI	GCTCC	3 cut(s)	163, 454, 613
Lsp1109I	GCAGC	3 cut(s)	55, 628, 706
MaeII	ACGT	2 cut(s)	285, 440
MaeIII	GTNAC	2 cut(s)	112, 181
MalI	GATC	1 cut(s)	346
MboI	GATC	1 cut(s)	344
MboII	GAAGA	4 cut(s)	20, 52, 496, 749
MflI	RGATCY	1 cut(s)	344
MluCI	AATT	3 cut(s)	676, 761, 806
MseI	TTAA	2 cut(s)	371, 675
MslI	CAYNNNNRTG	1 cut(s)	714
MspA1I	CMGCKG	1 cut(s)	45
MspI	CCGG	6 cut(s)	83, 161, 328, 361, 546, 599
MspR9I	CCNGG	3 cut(s)	528, 547, 600
MvaI	CCWGG	1 cut(s)	528
MvnI	CGCG	3 cut(s)	240, 621, 654
MwoI	GCNNNNNNNGC	1 cut(s)	74
NciI	CCSGG	2 cut(s)	547, 600
NcoI	CCATGG	1 cut(s)	19
NdeII	GATC	1 cut(s)	344
NlaIII	CATG	2 cut(s)	23, 170
NlaIV	GGNNCC	1 cut(s)	294
NmeAIII	GCCGAG	1 cut(s)	171
NmuCI	GTSAC	1 cut(s)	112
NspI	RCATGY	1 cut(s)	170
PcsI	WCGNNNNNNNCGW	1 cut(s)	476
PfeI	GAWTC	3 cut(s)	376, 567, 592
PflFI	GACNNNGTC	1 cut(s)	442
PfoI	TCCNGGA	1 cut(s)	545
PkrI	GCNGC	5 cut(s)	70, 91, 202, 618, 721
Psp6I	CCWGG	1 cut(s)	526
PspGI	CCWGG	1 cut(s)	526
PspN4I	GGNNCC	1 cut(s)	294
PspPI	GGNCC	2 cut(s)	292, 524
PsuI	RGATCY	1 cut(s)	344
PsyI	GACNNNGTC	1 cut(s)	442
RseI	CAYNNNNRTG	1 cut(s)	714
SaqAI	TTAA	2 cut(s)	371, 675
SatI	GCNGC	5 cut(s)	69, 90, 201, 617, 720
Sau3AI	GATC	1 cut(s)	344
Sau96I	GGNCC	2 cut(s)	292, 524
ScrFI	CCNGG	3 cut(s)	528, 547, 600
SinI	GGWCC	1 cut(s)	292
SmiMI	CAYNNNNRTG	1 cut(s)	714
Sse9I	AATT	3 cut(s)	676, 761, 806
StyD4I	CCNGG	3 cut(s)	526, 545, 598
StyI	CCWWGG	2 cut(s)	19, 520
TaaI	ACNGT	3 cut(s)	133, 181, 688
TaiI	ACGT	2 cut(s)	288, 443
TaqI	TCGA	1 cut(s)	176
TasI	AATT	3 cut(s)	676, 761, 806
TauI	GCSGC	2 cut(s)	92, 203
TfiI	GAWTC	3 cut(s)	376, 567, 592
Tru1I	TTAA	2 cut(s)	371, 675
Tru9I	TTAA	2 cut(s)	371, 675
TscAI	CASTG	1 cut(s)	136
TseFI	GTSAC	1 cut(s)	112
TseI	GCWGC	3 cut(s)	68, 616, 719
Tsp45I	GTSAC	1 cut(s)	112
TspDTI	ATGAA	2 cut(s)	497, 809
TspRI	CASTG	1 cut(s)	136
Tth111I	GACNNNGTC	1 cut(s)	442
VpaK11BI	GGWCC	1 cut(s)	292
XceI	RCATGY	1 cut(s)	170
ZraI	GACGTC	1 cut(s)	441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.