Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003676

Physical Location & Seq

Genomic Coordinates Forward (+)

12152519 .. 12154921

Gene Structure 2403 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G33500.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGAGGAGTATCTACAGTATATGAAGACTCTCCGTTCTCAGATGACTGATGTGGAGGATCATGCGGCGAAGGTCTCCGTTGAGGAACAGATGCAGGTTACAACAATCAGTACCTTGGAAAAAGATCTCGAACATGCATTGTCTGAGACGAAGAGACTGAAAGAGGAGACGGATCAGAAGACGAGGACAAGAGGTGAGATATGCTCACATATACTTGAGAAGCAGAGGAAAATTTCGTCGATGGAATCTGATTCAGTTAATATTGCACAGAGTTTGGAGCTTATTCTTCAAGAACGAGACAGTTTATCTGCTAAACTCGTATCGAAACGTTCTAACTATCTCAAGACGGCAGAAGAAGCTAGAACCAAACTAGAGGAGCAAAAGGGCTGGTTTATCTCCCATATGAGCAATGAAACTGGTCAACAAGGACATAAAAAAGAGACAAGGAATAACCTGATGGAACTATCAGATTCTGCTAGAGCAAAGCTTGATCAAGCAAAACTGATGAGATCCAACCTTCTTCAGGAAAATTCGAAGATCAAACTATCAATTGAGAATGTGAAGCACAAGATTAATGAGTTTAAGCCAGAGTTAATGTCAGTGGATATTAAGATCCTAGAAGAGGAATACACAGCTCTATTGTCAGATGAGTCCGGAGAGGCAGAGTATCTCAGTTCGCTACAGAGTCAGGCTGAGAAACTGAAGGTGACACTGATTTTATATAGGCGTGATTTGATTACTAACTATATGATAATGACCACCTCCACTTGTTGTAGGGAATTTCTTACATTGCTAAATGTGGTTGTGGAGAGGAATACAGTGTTGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

276

Amino Acids

31.9

Weight (kDa)

5.7

Isoelectric Point (pI)

54.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003676)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33500 AT1G33500 AT1G33500
fragaria_vesca	FvH4_2g00330 FvH4_2g00330 FvH4_2g00330 FvH4_2g00330 FvH4_2g00330 FvH4_2g00330 FvH4_2g00330 FvH4_2g00330 FvH4_2g00330 FvH4_2g00330 FvH4_2g00330 FvH4_2g04930
malus_domestica	MD05G1006300.v1.1
prunus_persica	Prupe.8G003600_v2.0.a1 Prupe.8G003600_v2.0.a1 Prupe.8G003600_v2.0.a1 Prupe.8G003600_v2.0.a1 Prupe.8G003600_v2.0.a1 Prupe.8G003600_v2.0.a1
pyrus_communis	pycom05g00150 pycom10g00200
rosa_chinensis	RchiOBHm_Chr6g0249621
rosa_laevigata	RLG00000015557
rosa_multiflora	Rmu_sc0006936.1_g000015
rosa_roxburghii	Rroxscaffold_7G00217480
rosa_rugosa	Rorug05G0494200 Rorug05G0494200
rosa_samantha	Rh6AG004000 Rh6BG006200 Rh6CG003000 Rh6DG002800
rosa_wichuraiana	Rw6G000440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	85
AccIII	TCCGGA	1 cut(s)	653
AciI	CCGC	1 cut(s)	65
AclI	AACGTT	1 cut(s)	328
AclWI	GGATC	4 cut(s)	66, 180, 504, 607
AcsI	RAATTY	3 cut(s)	231, 529, 779
AcuI	CTGAAG	2 cut(s)	506, 722
AfaI	GTAC	1 cut(s)	112
AfiI	CCNNNNNNNGG	2 cut(s)	523, 622
AgsI	TTSAA	1 cut(s)	290
AjuI	GAANNNNNNNTTGG	1 cut(s)	806
AluBI	AGCT	4 cut(s)	280, 359, 487, 635
AluI	AGCT	4 cut(s)	280, 359, 487, 635
Alw26I	GTCTC	6 cut(s)	79, 140, 148, 161, 291, 434
AlwI	GGATC	4 cut(s)	66, 180, 504, 607
AlwNI	CAGNNNCTG	1 cut(s)	473
Aor13HI	TCCGGA	1 cut(s)	653
ApoI	RAATTY	3 cut(s)	231, 529, 779
AseI	ATTAAT	1 cut(s)	573
AsuHPI	GGTGA	2 cut(s)	206, 718
AsuII	TTCGAA	1 cut(s)	533
BbsI	GAAGAC	2 cut(s)	32, 185
BccI	CCATC	2 cut(s)	235, 451
BceAI	ACGGC	1 cut(s)	363
BclI	TGATCA	1 cut(s)	490
BcoDI	GTCTC	6 cut(s)	79, 140, 148, 161, 291, 434
BfaI	CTAG	4 cut(s)	360, 371, 477, 617
BfmI	CTRYAG	2 cut(s)	14, 680
BfuAI	ACCTGC	1 cut(s)	85
BglII	AGATCT	1 cut(s)	124
BisI	GCNGC	1 cut(s)	66
BlsI	GCNGC	1 cut(s)	67
BmsI	GCATC	1 cut(s)	81
BpiI	GAAGAC	2 cut(s)	32, 185
BplI	GAGNNNNNCTC	2 cut(s)	188, 220
Bpu14I	TTCGAA	1 cut(s)	533
BpuEI	CTTGAG	2 cut(s)	236, 326
BsaI	GGTCTC	1 cut(s)	79
BsaJI	CCNNGG	1 cut(s)	114
BsaWI	WCCGGW	1 cut(s)	653
Bsc4I	CCNNNNNNNGG	2 cut(s)	523, 622
Bse1I	ACTGG	1 cut(s)	421
Bse3DI	GCAATG	2 cut(s)	415, 788
BseAI	TCCGGA	1 cut(s)	653
BseDI	CCNNGG	1 cut(s)	114
BseLI	CCNNNNNNNGG	2 cut(s)	523, 622
BseMI	GCAATG	2 cut(s)	415, 788
BseMII	CTCAG	4 cut(s)	53, 135, 684, 685
BseNI	ACTGG	1 cut(s)	421
BseRI	GAGGAG	3 cut(s)	20, 179, 389
BsiSI	CCGG	1 cut(s)	654
BslI	CCNNNNNNNGG	2 cut(s)	523, 622
BsmAI	GTCTC	6 cut(s)	79, 140, 148, 161, 291, 434
BsmBI	CGTCTC	2 cut(s)	140, 161
Bso31I	GGTCTC	1 cut(s)	79
Bsp119I	TTCGAA	1 cut(s)	533
Bsp13I	TCCGGA	1 cut(s)	653
Bsp143I	GATC	7 cut(s)	58, 124, 172, 490, 509, 537, 612
BspACI	CCGC	1 cut(s)	65
BspCNI	CTCAG	4 cut(s)	52, 136, 684, 685
BspEI	TCCGGA	1 cut(s)	653
BspMI	ACCTGC	1 cut(s)	85
BspPI	GGATC	4 cut(s)	66, 180, 504, 607
BspT104I	TTCGAA	1 cut(s)	533
BspTNI	GGTCTC	1 cut(s)	79
BsrDI	GCAATG	2 cut(s)	415, 788
BsrI	ACTGG	1 cut(s)	421
BssECI	CCNNGG	1 cut(s)	114
BssMI	GATC	7 cut(s)	58, 124, 172, 490, 509, 537, 612
BssT1I	CCWWGG	1 cut(s)	114
Bst4CI	ACNGT	3 cut(s)	18, 302, 820
Bst6I	CTCTTC	2 cut(s)	146, 615
BstBI	TTCGAA	1 cut(s)	533
BstDEI	CTNAG	4 cut(s)	39, 144, 671, 693
BstENI	CCTNNNNNAGG	2 cut(s)	521, 620
BstKTI	GATC	7 cut(s)	61, 127, 175, 493, 512, 540, 615
BstMAI	GTCTC	6 cut(s)	79, 140, 148, 161, 291, 434
BstMBI	GATC	7 cut(s)	58, 124, 172, 490, 509, 537, 612
BstMWI	GCNNNNNNNGC	1 cut(s)	356
BstNSI	RCATGY	1 cut(s)	137
BstSFI	CTRYAG	2 cut(s)	14, 680
BstV2I	GAAGAC	2 cut(s)	32, 185
BstX2I	RGATCY	3 cut(s)	124, 509, 612
BstYI	RGATCY	3 cut(s)	124, 509, 612
BtsIMutI	CAGTG	3 cut(s)	606, 710, 825
BveI	ACCTGC	1 cut(s)	85
CaiI	CAGNNNCTG	1 cut(s)	473
Csp6I	GTAC	1 cut(s)	111
CviAII	CATG	2 cut(s)	62, 134
CviJI	RGCY	7 cut(s)	280, 359, 387, 487, 586, 635, 692
CviKI_1	RGCY	7 cut(s)	280, 359, 387, 487, 586, 635, 692
CviQI	GTAC	1 cut(s)	111
DdeI	CTNAG	4 cut(s)	39, 144, 671, 693
DpnI	GATC	7 cut(s)	60, 126, 174, 492, 511, 539, 614
DpnII	GATC	7 cut(s)	58, 124, 172, 490, 509, 537, 612
Eam1104I	CTCTTC	2 cut(s)	146, 615
EarI	CTCTTC	2 cut(s)	146, 615
Eco130I	CCWWGG	1 cut(s)	114
Eco31I	GGTCTC	1 cut(s)	79
Eco57I	CTGAAG	2 cut(s)	506, 722
EcoNI	CCTNNNNNAGG	2 cut(s)	521, 620
EcoT14I	CCWWGG	1 cut(s)	114
EcoT22I	ATGCAT	1 cut(s)	139
ErhI	CCWWGG	1 cut(s)	114
Esp3I	CGTCTC	2 cut(s)	140, 161
FaeI	CATG	2 cut(s)	65, 137
FatI	CATG	2 cut(s)	61, 133
FauNDI	CATATG	1 cut(s)	402
FbaI	TGATCA	1 cut(s)	490
Fnu4HI	GCNGC	1 cut(s)	66
Fsp4HI	GCNGC	1 cut(s)	66
FspBI	CTAG	4 cut(s)	360, 371, 477, 617
GluI	GCNGC	1 cut(s)	66
HapII	CCGG	1 cut(s)	654
Hin1II	CATG	2 cut(s)	65, 137
HincII	GTYRAC	1 cut(s)	422
HindII	GTYRAC	1 cut(s)	422
HindIII	AAGCTT	1 cut(s)	485
HinfI	GANTC	6 cut(s)	28, 245, 251, 470, 650, 685
HpaII	CCGG	1 cut(s)	654
HphI	GGTGA	2 cut(s)	206, 718
Hpy166II	GTNNAC	1 cut(s)	422
Hpy188I	TCNGA	6 cut(s)	42, 145, 177, 250, 469, 646
Hpy188III	TCNNGA	5 cut(s)	128, 290, 343, 524, 654
Hpy8I	GTNNAC	1 cut(s)	422
Hpy99I	CGWCG	1 cut(s)	241
HpyAV	CCTTC	3 cut(s)	64, 527, 697
HpyCH4III	ACNGT	3 cut(s)	18, 302, 820
HpyCH4IV	ACGT	1 cut(s)	328
HpyCH4V	TGCA	3 cut(s)	94, 137, 266
HpyF10VI	GCNNNNNNNGC	1 cut(s)	356
HpyF3I	CTNAG	4 cut(s)	39, 144, 671, 693
HpySE526I	ACGT	1 cut(s)	328
Hsp92II	CATG	2 cut(s)	65, 137
Kpn2I	TCCGGA	1 cut(s)	653
Ksp22I	TGATCA	1 cut(s)	490
Kzo9I	GATC	7 cut(s)	58, 124, 172, 490, 509, 537, 612
LmnI	GCTCC	2 cut(s)	277, 376
LpnPI	CCDG	8 cut(s)	80, 373, 402, 467, 509, 600, 667, 674
LweI	GCATC	1 cut(s)	81
MaeI	CTAG	4 cut(s)	360, 371, 477, 617
MaeII	ACGT	1 cut(s)	328
MaeIII	GTNAC	2 cut(s)	97, 706
MalI	GATC	7 cut(s)	60, 126, 174, 492, 511, 539, 614
MboI	GATC	7 cut(s)	58, 124, 172, 490, 509, 537, 612
MboII	GAAGA	8 cut(s)	37, 163, 190, 278, 365, 512, 547, 632
MfeI	CAATTG	1 cut(s)	549
MflI	RGATCY	3 cut(s)	124, 509, 612
MluCI	AATT	4 cut(s)	231, 529, 549, 779
MlyI	GAGTC	3 cut(s)	22, 659, 694
MmeI	TCCRAC	1 cut(s)	537
Mph1103I	ATGCAT	1 cut(s)	139
MroI	TCCGGA	1 cut(s)	653
MseI	TTAA	5 cut(s)	258, 573, 582, 593, 609
MspI	CCGG	1 cut(s)	654
MunI	CAATTG	1 cut(s)	549
MwoI	GCNNNNNNNGC	1 cut(s)	356
NdeI	CATATG	1 cut(s)	402
NdeII	GATC	7 cut(s)	58, 124, 172, 490, 509, 537, 612
NlaIII	CATG	2 cut(s)	65, 137
NmuCI	GTSAC	1 cut(s)	706
NsiI	ATGCAT	1 cut(s)	139
NspI	RCATGY	1 cut(s)	137
NspV	TTCGAA	1 cut(s)	533
PfeI	GAWTC	3 cut(s)	245, 251, 470
PkrI	GCNGC	1 cut(s)	67
PleI	GAGTC	3 cut(s)	22, 658, 693
PpsI	GAGTC	3 cut(s)	22, 658, 693
PshBI	ATTAAT	1 cut(s)	573
Psp1406I	AACGTT	1 cut(s)	328
PstNI	CAGNNNCTG	1 cut(s)	473
PsuI	RGATCY	3 cut(s)	124, 509, 612
RsaI	GTAC	1 cut(s)	112
RsaNI	GTAC	1 cut(s)	111
SaqAI	TTAA	5 cut(s)	258, 573, 582, 593, 609
SatI	GCNGC	1 cut(s)	66
Sau3AI	GATC	7 cut(s)	58, 124, 172, 490, 509, 537, 612
SchI	GAGTC	3 cut(s)	22, 659, 694
SfaNI	GCATC	1 cut(s)	81
SfcI	CTRYAG	2 cut(s)	14, 680
SfuI	TTCGAA	1 cut(s)	533
SmlI	CTYRAG	2 cut(s)	215, 341
SmoI	CTYRAG	2 cut(s)	215, 341
Sse9I	AATT	4 cut(s)	231, 529, 549, 779
SsiI	CCGC	1 cut(s)	65
SspI	AATATT	1 cut(s)	262
SspMI	CTAG	4 cut(s)	360, 371, 477, 617
StyI	CCWWGG	1 cut(s)	114
TaaI	ACNGT	3 cut(s)	18, 302, 820
TaiI	ACGT	1 cut(s)	331
TaqI	TCGA	4 cut(s)	129, 239, 323, 533
TasI	AATT	4 cut(s)	231, 529, 549, 779
TauI	GCSGC	1 cut(s)	68
TfiI	GAWTC	3 cut(s)	245, 251, 470
Tru1I	TTAA	5 cut(s)	258, 573, 582, 593, 609
Tru9I	TTAA	5 cut(s)	258, 573, 582, 593, 609
TscAI	CASTG	3 cut(s)	606, 717, 825
TseFI	GTSAC	1 cut(s)	706
Tsp45I	GTSAC	1 cut(s)	706
TspDTI	ATGAA	2 cut(s)	38, 426
TspGWI	ACGGA	3 cut(s)	23, 67, 185
TspRI	CASTG	3 cut(s)	606, 717, 825
VspI	ATTAAT	1 cut(s)	573
XagI	CCTNNNNNAGG	2 cut(s)	521, 620
XapI	RAATTY	3 cut(s)	231, 529, 779
XceI	RCATGY	1 cut(s)	137
XspI	CTAG	4 cut(s)	360, 371, 477, 617
Zsp2I	ATGCAT	1 cut(s)	139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.