Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0003676

Physical Location & Seq

Genomic Coordinates Forward (+)

296993 .. 302505

Gene Structure 5513 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G003600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGACGAATACTTACAGTACATGAAGACATTGCGTTCTCAGATGAACGATGTGGAGGATCAAGCTGCGAAGGTATCAGTGGAAGAGCAAATGCAACTGACCACCATTCAGACCTTGGAGAGCGATCTCAATTCTGCAATATCTGAAACAAAACGATTCATGGAAGACATTGAGCATATGAAGAACGCGAAGGGTCAAATATGCTCACTGATTTTGGAAAAACAGAGAAAGATAGCTTCTTTGGAGTCTGATTCATCCACCCTTATAAAGACTTTGGAGCTTATCGAACAAGAGAGAACCAACTTATCTTCCAATCTTATAGAAAAAAGCACTTACTACATGAAGGTTAGAGAGGATATCAATGCCAAATTGCAGCAACACCAGGATTGGGTCTATTCTCATCACACTCATATGGAACTGGGAGAGCATGGAATGGTTAAGGAGAGATCTGATGAGCAAAGAGGGAAGGCTTGCTTTGATAACCACCTCAGCATGGGCAATCAGGGCAATGATGCAAGGAAGAACCTAATGGCCACGTTGGACTCTGCTAAAGCCAAGCTTGATGAGATTTTAAAGATGAAATCTGAACTTGCTATAGAAAACCGCAAGATGAAACAGGCTGTTGAGCAAGCAAATTGCAGGGAAAATGATTTTAAGCCAGAGCTAAGGGCAATGGATGTAAACACCCTTGAAGAGGAATACGATGCCCTTCTATCAGATAAAGCTGGAGTAACTGAATACCTGAAGTCTCTGCAGGACCAAATTGAGAAACTGAAGGTGACTGTTTATCAGGTTTCTCCTTGGTGTTTAAAGATTACAGAAAGTAATAACCATGTGATCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

282

Amino Acids

32.48

Weight (kDa)

5.25

Isoelectric Point (pI)

50.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003676)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33500 AT1G33500 AT1G33500
fragaria_vesca	FvH4_2g00330 FvH4_2g00330 FvH4_2g00330 FvH4_2g00330 FvH4_2g00330 FvH4_2g00330 FvH4_2g00330 FvH4_2g00330 FvH4_2g00330 FvH4_2g00330 FvH4_2g00330 FvH4_2g04930
malus_domestica	MD05G1006300.v1.1
prunus_persica	Prupe.8G003600_v2.0.a1 Prupe.8G003600_v2.0.a1 Prupe.8G003600_v2.0.a1 Prupe.8G003600_v2.0.a1 Prupe.8G003600_v2.0.a1 Prupe.8G003600_v2.0.a1
pyrus_communis	pycom05g00150 pycom10g00200
rosa_chinensis	RchiOBHm_Chr6g0249621
rosa_laevigata	RLG00000015557
rosa_multiflora	Rmu_sc0006936.1_g000015
rosa_roxburghii	Rroxscaffold_7G00217480
rosa_rugosa	Rorug05G0494200 Rorug05G0494200
rosa_samantha	Rh6AG004000 Rh6BG006200 Rh6CG003000 Rh6DG002800
rosa_wichuraiana	Rw6G000440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	266
AccII	CGCG	1 cut(s)	188
AciI	CCGC	1 cut(s)	604
AclWI	GGATC	1 cut(s)	66
AcoI	YGGCCR	1 cut(s)	531
AcuI	CTGAAG	2 cut(s)	764, 794
AfaI	GTAC	1 cut(s)	20
AfiI	CCNNNNNNNGG	3 cut(s)	388, 493, 694
AgsI	TTSAA	1 cut(s)	692
AjnI	CCWGG	1 cut(s)	381
AluBI	AGCT	6 cut(s)	65, 236, 280, 559, 664, 725
AluI	AGCT	6 cut(s)	65, 236, 280, 559, 664, 725
Alw26I	GTCTC	1 cut(s)	753
AlwI	GGATC	1 cut(s)	66
AoxI	GGCC	1 cut(s)	531
ApeKI	GCWGC	2 cut(s)	65, 373
AspS9I	GGNCC	1 cut(s)	757
AsuHPI	GGTGA	1 cut(s)	790
AvaII	GGWCC	1 cut(s)	757
BalI	TGGCCA	1 cut(s)	533
BbsI	GAAGAC	2 cut(s)	32, 171
BbvCI	CCTCAGC	1 cut(s)	488
BbvI	GCAGC	2 cut(s)	52, 385
BciT130I	CCWGG	1 cut(s)	383
BclI	TGATCA	1 cut(s)	837
BcoDI	GTCTC	1 cut(s)	753
BfmI	CTRYAG	2 cut(s)	594, 752
BglII	AGATCT	1 cut(s)	446
BisI	GCNGC	2 cut(s)	66, 374
BlsI	GCNGC	2 cut(s)	67, 375
Bme1390I	CCNGG	1 cut(s)	383
Bme18I	GGWCC	1 cut(s)	757
BmgT120I	GGNCC	1 cut(s)	757
BmrFI	CCNGG	1 cut(s)	383
BmrI	ACTGGG	1 cut(s)	428
BmsI	GCATC	2 cut(s)	502, 694
BmuI	ACTGGG	1 cut(s)	428
BpiI	GAAGAC	2 cut(s)	32, 171
BpmI	CTGGAG	1 cut(s)	747
Bpu10I	CCTNAGC	2 cut(s)	488, 665
BsaJI	CCNNGG	2 cut(s)	114, 800
Bsc4I	CCNNNNNNNGG	3 cut(s)	388, 493, 694
Bse1I	ACTGG	1 cut(s)	423
Bse3DI	GCAATG	3 cut(s)	29, 514, 678
BseBI	CCWGG	1 cut(s)	383
BseDI	CCNNGG	2 cut(s)	114, 800
BseGI	GGATG	2 cut(s)	254, 682
BseLI	CCNNNNNNNGG	3 cut(s)	388, 493, 694
BseMI	GCAATG	3 cut(s)	29, 514, 678
BseMII	CTCAG	2 cut(s)	53, 502
BseNI	ACTGG	1 cut(s)	423
BseXI	GCAGC	2 cut(s)	52, 385
Bsh1236I	CGCG	1 cut(s)	188
BshFI	GGCC	1 cut(s)	533
BslI	CCNNNNNNNGG	3 cut(s)	388, 493, 694
BsmAI	GTCTC	1 cut(s)	753
BsnI	GGCC	1 cut(s)	533
Bsp143I	GATC	4 cut(s)	58, 124, 446, 837
BspACI	CCGC	1 cut(s)	604
BspANI	GGCC	1 cut(s)	533
BspCNI	CTCAG	2 cut(s)	52, 501
BspFNI	CGCG	1 cut(s)	188
BspMAI	CTGCAG	1 cut(s)	756
BspPI	GGATC	1 cut(s)	66
BspQI	GCTCTTC	1 cut(s)	78
BsrDI	GCAATG	3 cut(s)	29, 514, 678
BsrI	ACTGG	1 cut(s)	423
BssECI	CCNNGG	2 cut(s)	114, 800
BssMI	GATC	4 cut(s)	58, 124, 446, 837
BssT1I	CCWWGG	2 cut(s)	114, 800
Bst2UI	CCWGG	1 cut(s)	383
Bst4CI	ACNGT	2 cut(s)	18, 784
Bst6I	CTCTTC	2 cut(s)	78, 687
BstC8I	GCNNGC	2 cut(s)	472, 630
BstDEI	CTNAG	3 cut(s)	39, 488, 665
BstENI	CCTNNNNNAGG	1 cut(s)	692
BstF5I	GGATG	2 cut(s)	254, 682
BstFNI	CGCG	1 cut(s)	188
BstKTI	GATC	4 cut(s)	61, 127, 449, 840
BstMAI	GTCTC	1 cut(s)	753
BstMBI	GATC	4 cut(s)	58, 124, 446, 837
BstMWI	GCNNNNNNNGC	1 cut(s)	504
BstNI	CCWGG	1 cut(s)	383
BstSCI	CCNGG	1 cut(s)	381
BstSFI	CTRYAG	2 cut(s)	594, 752
BstUI	CGCG	1 cut(s)	188
BstV1I	GCAGC	2 cut(s)	52, 385
BstV2I	GAAGAC	2 cut(s)	32, 171
BstX2I	RGATCY	1 cut(s)	446
BstYI	RGATCY	1 cut(s)	446
BsuRI	GGCC	1 cut(s)	533
BtsCI	GGATG	2 cut(s)	254, 682
BtsIMutI	CAGTG	2 cut(s)	84, 206
Cac8I	GCNNGC	2 cut(s)	472, 630
Cfr13I	GGNCC	1 cut(s)	757
Csp6I	GTAC	1 cut(s)	19
CviAII	CATG	6 cut(s)	22, 160, 340, 428, 493, 833
CviQI	GTAC	1 cut(s)	19
DdeI	CTNAG	3 cut(s)	39, 488, 665
DpnI	GATC	4 cut(s)	60, 126, 448, 839
DpnII	GATC	4 cut(s)	58, 124, 446, 837
DraI	TTTAAA	2 cut(s)	573, 810
EaeI	YGGCCR	1 cut(s)	531
Eam1104I	CTCTTC	2 cut(s)	78, 687
EarI	CTCTTC	2 cut(s)	78, 687
Eco130I	CCWWGG	2 cut(s)	114, 800
Eco32I	GATATC	1 cut(s)	358
Eco47I	GGWCC	1 cut(s)	757
Eco57I	CTGAAG	2 cut(s)	764, 794
EcoNI	CCTNNNNNAGG	1 cut(s)	692
EcoRII	CCWGG	1 cut(s)	381
EcoRV	GATATC	1 cut(s)	358
EcoT14I	CCWWGG	2 cut(s)	114, 800
ErhI	CCWWGG	2 cut(s)	114, 800
FaeI	CATG	6 cut(s)	25, 163, 343, 431, 496, 836
FalI	AAGNNNNNCTT	4 cut(s)	458, 490, 543, 575
FatI	CATG	6 cut(s)	21, 159, 339, 427, 492, 832
FauNDI	CATATG	2 cut(s)	177, 411
FbaI	TGATCA	1 cut(s)	837
Fnu4HI	GCNGC	2 cut(s)	66, 374
FokI	GGATG	2 cut(s)	241, 689
Fsp4HI	GCNGC	2 cut(s)	66, 374
GluI	GCNGC	2 cut(s)	66, 374
GsuI	CTGGAG	1 cut(s)	747
HaeIII	GGCC	1 cut(s)	533
Hin1II	CATG	6 cut(s)	25, 163, 343, 431, 496, 836
HindIII	AAGCTT	1 cut(s)	557
HinfI	GANTC	4 cut(s)	156, 245, 251, 542
HphI	GGTGA	1 cut(s)	790
Hpy166II	GTNNAC	1 cut(s)	682
Hpy188I	TCNGA	7 cut(s)	42, 111, 145, 250, 451, 586, 718
Hpy8I	GTNNAC	1 cut(s)	682
HpyAV	CCTTC	6 cut(s)	64, 184, 337, 460, 719, 769
HpyCH4III	ACNGT	2 cut(s)	18, 784
HpyCH4IV	ACGT	1 cut(s)	536
HpyCH4V	TGCA	6 cut(s)	94, 137, 373, 515, 639, 754
HpyF10VI	GCNNNNNNNGC	1 cut(s)	504
HpyF3I	CTNAG	3 cut(s)	39, 488, 665
HpySE526I	ACGT	1 cut(s)	536
Hsp92II	CATG	6 cut(s)	25, 163, 343, 431, 496, 836
Ksp22I	TGATCA	1 cut(s)	837
Kzo9I	GATC	4 cut(s)	58, 124, 446, 837
LguI	GCTCTTC	1 cut(s)	78
LmnI	GCTCC	1 cut(s)	277
Lsp1109I	GCAGC	2 cut(s)	52, 385
LweI	GCATC	2 cut(s)	502, 694
MaeII	ACGT	1 cut(s)	536
MaeIII	GTNAC	2 cut(s)	730, 778
MalI	GATC	4 cut(s)	60, 126, 448, 839
MboI	GATC	4 cut(s)	58, 124, 446, 837
MboII	GAAGA	7 cut(s)	37, 95, 176, 193, 300, 532, 704
MflI	RGATCY	1 cut(s)	446
MlsI	TGGCCA	1 cut(s)	533
MluCI	AATT	4 cut(s)	130, 368, 634, 762
MluNI	TGGCCA	1 cut(s)	533
MlyI	GAGTC	2 cut(s)	254, 536
MmeI	TCCRAC	1 cut(s)	519
MnlI	CCTC	5 cut(s)	49, 346, 455, 497, 688
Mox20I	TGGCCA	1 cut(s)	533
MscI	TGGCCA	1 cut(s)	533
MseI	TTAA	4 cut(s)	438, 572, 654, 809
MslI	CAYNNNNRTG	1 cut(s)	410
Msp20I	TGGCCA	1 cut(s)	533
MspR9I	CCNGG	1 cut(s)	383
MvaI	CCWGG	1 cut(s)	383
MvnI	CGCG	1 cut(s)	188
MwoI	GCNNNNNNNGC	1 cut(s)	504
NdeI	CATATG	2 cut(s)	177, 411
NdeII	GATC	4 cut(s)	58, 124, 446, 837
NlaIII	CATG	6 cut(s)	25, 163, 343, 431, 496, 836
NmuCI	GTSAC	1 cut(s)	778
PciSI	GCTCTTC	1 cut(s)	78
PfeI	GAWTC	2 cut(s)	156, 251
PkrI	GCNGC	2 cut(s)	67, 375
PleI	GAGTC	2 cut(s)	253, 536
PpsI	GAGTC	2 cut(s)	253, 536
PsiI	TTATAA	1 cut(s)	266
Psp6I	CCWGG	1 cut(s)	381
PspGI	CCWGG	1 cut(s)	381
PspPI	GGNCC	1 cut(s)	757
PstI	CTGCAG	1 cut(s)	756
PsuI	RGATCY	1 cut(s)	446
RsaI	GTAC	1 cut(s)	20
RsaNI	GTAC	1 cut(s)	19
RseI	CAYNNNNRTG	1 cut(s)	410
SapI	GCTCTTC	1 cut(s)	78
SaqAI	TTAA	4 cut(s)	438, 572, 654, 809
SatI	GCNGC	2 cut(s)	66, 374
Sau3AI	GATC	4 cut(s)	58, 124, 446, 837
Sau96I	GGNCC	1 cut(s)	757
SchI	GAGTC	2 cut(s)	254, 536
ScrFI	CCNGG	1 cut(s)	383
SfaNI	GCATC	2 cut(s)	502, 694
SfcI	CTRYAG	2 cut(s)	594, 752
SinI	GGWCC	1 cut(s)	757
SmiMI	CAYNNNNRTG	1 cut(s)	410
Sse9I	AATT	4 cut(s)	130, 368, 634, 762
SsiI	CCGC	1 cut(s)	604
StyD4I	CCNGG	1 cut(s)	381
StyI	CCWWGG	2 cut(s)	114, 800
TaaI	ACNGT	2 cut(s)	18, 784
TaiI	ACGT	1 cut(s)	539
TaqI	TCGA	1 cut(s)	285
TasI	AATT	4 cut(s)	130, 368, 634, 762
TatI	WGTACW	1 cut(s)	18
TfiI	GAWTC	2 cut(s)	156, 251
Tru1I	TTAA	4 cut(s)	438, 572, 654, 809
Tru9I	TTAA	4 cut(s)	438, 572, 654, 809
TscAI	CASTG	2 cut(s)	84, 213
TseFI	GTSAC	1 cut(s)	778
TseI	GCWGC	2 cut(s)	65, 373
Tsp45I	GTSAC	1 cut(s)	778
TspDTI	ATGAA	8 cut(s)	38, 59, 148, 194, 243, 356, 593, 626
TspRI	CASTG	2 cut(s)	84, 213
VpaK11BI	GGWCC	1 cut(s)	757
XagI	CCTNNNNNAGG	1 cut(s)	692
XcmI	CCANNNNNNNNNTGG	1 cut(s)	112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.