Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0003676

Physical Location & Seq

Genomic Coordinates Forward (+)

419002 .. 428602

Gene Structure 9601 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g00330.t5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGAGGACTACTTGCAGTACATGAAGACATTGCGCTCTCAGATGAACGATGTGGAAGATCAAGCTACCAAGATCTCAGTGGAGGAGCAAATGCAATTAACCACTTTTCAGACCTTAGAGAACGATCTCAATGCCGCAATATCCGAAACTAAACGATTCATGGAAGACATTGAACAGATGAATAAGGCTAAGGGTCAAATATGCTCACAGATTCTGGAAAGACAGAGAAAGACAGTTTCCTTGGAGTCTGATTCATCCACCCTTATGCAGAACTTGGAGCTTATTGAACAAGAAAGGATCAACTTGGCCGCCAAGCTTATTGAGAAGAGCACTTACTACTTGAAAGTTTCAGAGGATATCGCTGCTAAATTGCAGCAACAGAAGGATTGGATCATTTGTCACCAGACTACTACAGAACTTGGAGAACCTGGAATGGTTAAGGATACAATTGATGAGCAACGAGTTGCTACTCAAGGGAAGGCTAGCATTGGCGACCACCTCTGCATAACTAATCAGGGCAATGACGCAAGAAAGAATCTAATGGCGATGGTTGACTCTGCTAAAGTTAAGCTTGATGAGATTTTACAAATGAAATCTGAACTTGTCAAGGAGAACTACAAGATGAAGCAAGCTATTGACCAAGTAAATTGCAGGGAAAGTAATTTTAAGCCAGAGCTAAGAGCGTTAGACATAAAGACCCTGGAGGACGAATACAATGCCCTTGTATCAGATAATGCAGGAGAAGCTGAATACTTAAAGTCTCTGCAGGACCAAATTGAGAAATTGAAGGGTATATCTCATGTGCTTAAATGTTCTTGTGGAGTGGAATACAAAGTGGAGCTGGACTCTTGTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

286

Amino Acids

32.55

Weight (kDa)

4.86

Isoelectric Point (pI)

44.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003676)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33500 AT1G33500 AT1G33500
fragaria_vesca	FvH4_2g00330 FvH4_2g00330 FvH4_2g00330 FvH4_2g00330 FvH4_2g00330 FvH4_2g00330 FvH4_2g00330 FvH4_2g00330 FvH4_2g00330 FvH4_2g00330 FvH4_2g00330 FvH4_2g04930
malus_domestica	MD05G1006300.v1.1
prunus_persica	Prupe.8G003600_v2.0.a1 Prupe.8G003600_v2.0.a1 Prupe.8G003600_v2.0.a1 Prupe.8G003600_v2.0.a1 Prupe.8G003600_v2.0.a1 Prupe.8G003600_v2.0.a1
pyrus_communis	pycom05g00150 pycom10g00200
rosa_chinensis	RchiOBHm_Chr6g0249621
rosa_laevigata	RLG00000015557
rosa_multiflora	Rmu_sc0006936.1_g000015
rosa_roxburghii	Rroxscaffold_7G00217480
rosa_rugosa	Rorug05G0494200 Rorug05G0494200
rosa_samantha	Rh6AG004000 Rh6BG006200 Rh6CG003000 Rh6DG002800
rosa_wichuraiana	Rw6G000440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	135, 309
AclWI	GGATC	2 cut(s)	305, 398
AcoI	YGGCCR	1 cut(s)	306
AfaI	GTAC	1 cut(s)	20
AgsI	TTSAA	4 cut(s)	173, 287, 343, 787
AjnI	CCWGG	2 cut(s)	427, 699
AluBI	AGCT	8 cut(s)	65, 280, 316, 571, 632, 676, 746, 841
AluI	AGCT	8 cut(s)	65, 280, 316, 571, 632, 676, 746, 841
Alw21I	GWGCWC	1 cut(s)	332
Alw26I	GTCTC	1 cut(s)	765
AlwI	GGATC	2 cut(s)	305, 398
AlwNI	CAGNNNCTG	1 cut(s)	214
AoxI	GGCC	1 cut(s)	306
ApeKI	GCWGC	2 cut(s)	362, 373
AspLEI	GCGC	1 cut(s)	36
AspS9I	GGNCC	1 cut(s)	769
AsuHPI	GGTGA	1 cut(s)	392
AsuNHI	GCTAGC	1 cut(s)	482
AvaII	GGWCC	1 cut(s)	769
BarI	GAAGNNNNNNTAC	2 cut(s)	317, 349
BbsI	GAAGAC	2 cut(s)	32, 171
Bbv12I	GWGCWC	1 cut(s)	332
BbvI	GCAGC	2 cut(s)	349, 385
BccI	CCATC	1 cut(s)	541
BcgI	CGANNNNNNTGC	4 cut(s)	113, 147, 698, 732
BciT130I	CCWGG	2 cut(s)	429, 701
BciVI	GTATCC	1 cut(s)	436
BcoDI	GTCTC	1 cut(s)	765
BfaI	CTAG	1 cut(s)	483
BfmI	CTRYAG	2 cut(s)	411, 764
BfuI	GTATCC	1 cut(s)	436
BglII	AGATCT	1 cut(s)	72
BisI	GCNGC	4 cut(s)	135, 309, 363, 374
BlsI	GCNGC	4 cut(s)	136, 310, 364, 375
Bme1390I	CCNGG	2 cut(s)	429, 701
Bme18I	GGWCC	1 cut(s)	769
BmgT120I	GGNCC	1 cut(s)	769
BmrFI	CCNGG	2 cut(s)	429, 701
BmtI	GCTAGC	1 cut(s)	486
BpiI	GAAGAC	2 cut(s)	32, 171
BplI	GAGNNNNNCTC	1 cut(s)	830
BpmI	CTGGAG	1 cut(s)	722
Bpu10I	CCTNAGC	1 cut(s)	189
BpuEI	CTTGAG	1 cut(s)	456
BsaJI	CCNNGG	2 cut(s)	240, 699
Bse3DI	GCAATG	2 cut(s)	29, 526
BseBI	CCWGG	2 cut(s)	429, 701
BseDI	CCNNGG	2 cut(s)	240, 699
BseGI	GGATG	1 cut(s)	254
BseMI	GCAATG	2 cut(s)	29, 526
BseMII	CTCAG	2 cut(s)	53, 90
BseRI	GAGGAG	1 cut(s)	98
BseXI	GCAGC	2 cut(s)	349, 385
BshFI	GGCC	1 cut(s)	308
BsiHKAI	GWGCWC	1 cut(s)	332
BsmAI	GTCTC	1 cut(s)	765
BsnI	GGCC	1 cut(s)	308
Bsp1286I	GDGCHC	1 cut(s)	332
Bsp143I	GATC	5 cut(s)	58, 72, 124, 297, 390
BspACI	CCGC	2 cut(s)	135, 309
BspANI	GGCC	1 cut(s)	308
BspCNI	CTCAG	2 cut(s)	52, 89
BspMAI	CTGCAG	1 cut(s)	768
BspOI	GCTAGC	1 cut(s)	486
BspPI	GGATC	2 cut(s)	305, 398
BspQI	GCTCTTC	1 cut(s)	320
BsrDI	GCAATG	2 cut(s)	29, 526
BssECI	CCNNGG	2 cut(s)	240, 699
BssMI	GATC	5 cut(s)	58, 72, 124, 297, 390
BssT1I	CCWWGG	1 cut(s)	240
Bst2UI	CCWGG	2 cut(s)	429, 701
Bst4CI	ACNGT	1 cut(s)	235
Bst6I	CTCTTC	1 cut(s)	320
BstC8I	GCNNGC	2 cut(s)	484, 630
BstDEI	CTNAG	5 cut(s)	39, 76, 115, 189, 677
BstF5I	GGATG	1 cut(s)	254
BstHHI	GCGC	1 cut(s)	36
BstKTI	GATC	5 cut(s)	61, 75, 127, 300, 393
BstMAI	GTCTC	1 cut(s)	765
BstMBI	GATC	5 cut(s)	58, 72, 124, 297, 390
BstMWI	GCNNNNNNNGC	1 cut(s)	743
BstNI	CCWGG	2 cut(s)	429, 701
BstSCI	CCNGG	2 cut(s)	427, 699
BstSFI	CTRYAG	2 cut(s)	411, 764
BstV1I	GCAGC	2 cut(s)	349, 385
BstV2I	GAAGAC	2 cut(s)	32, 171
BstX2I	RGATCY	1 cut(s)	72
BstYI	RGATCY	1 cut(s)	72
BsuI	GTATCC	1 cut(s)	436
BsuRI	GGCC	1 cut(s)	308
BtgZI	GCGATG	1 cut(s)	560
BtsCI	GGATG	1 cut(s)	254
BtsIMutI	CAGTG	1 cut(s)	84
Cac8I	GCNNGC	2 cut(s)	484, 630
CaiI	CAGNNNCTG	1 cut(s)	214
CfoI	GCGC	1 cut(s)	36
Cfr13I	GGNCC	1 cut(s)	769
CseI	GACGC	1 cut(s)	533
Csp6I	GTAC	1 cut(s)	19
CviAII	CATG	3 cut(s)	22, 160, 800
CviQI	GTAC	1 cut(s)	19
DdeI	CTNAG	5 cut(s)	39, 76, 115, 189, 677
DpnI	GATC	5 cut(s)	60, 74, 126, 299, 392
DpnII	GATC	5 cut(s)	58, 72, 124, 297, 390
EaeI	YGGCCR	1 cut(s)	306
Eam1104I	CTCTTC	1 cut(s)	320
EarI	CTCTTC	1 cut(s)	320
Eco130I	CCWWGG	1 cut(s)	240
Eco32I	GATATC	1 cut(s)	358
Eco47I	GGWCC	1 cut(s)	769
EcoRII	CCWGG	2 cut(s)	427, 699
EcoRV	GATATC	1 cut(s)	358
EcoT14I	CCWWGG	1 cut(s)	240
ErhI	CCWWGG	1 cut(s)	240
FaeI	CATG	3 cut(s)	25, 163, 803
FaiI	YATR	9 cut(s)	23, 161, 202, 266, 506, 692, 794, 801, 856
FalI	AAGNNNNNCTT	2 cut(s)	555, 587
FatI	CATG	3 cut(s)	21, 159, 799
Fnu4HI	GCNGC	4 cut(s)	135, 309, 363, 374
FokI	GGATG	1 cut(s)	241
Fsp4HI	GCNGC	4 cut(s)	135, 309, 363, 374
FspBI	CTAG	1 cut(s)	483
GlaI	GCGC	1 cut(s)	35
GluI	GCNGC	4 cut(s)	135, 309, 363, 374
GsuI	CTGGAG	1 cut(s)	722
HaeIII	GGCC	1 cut(s)	308
HgaI	GACGC	1 cut(s)	533
HhaI	GCGC	1 cut(s)	36
Hin1II	CATG	3 cut(s)	25, 163, 803
Hin6I	GCGC	1 cut(s)	34
HinP1I	GCGC	1 cut(s)	34
HincII	GTYRAC	1 cut(s)	553
HindII	GTYRAC	1 cut(s)	553
HindIII	AAGCTT	2 cut(s)	314, 569
HinfI	GANTC	7 cut(s)	156, 211, 245, 251, 535, 554, 845
HphI	GGTGA	1 cut(s)	392
Hpy166II	GTNNAC	1 cut(s)	553
Hpy188I	TCNGA	7 cut(s)	42, 111, 145, 250, 352, 598, 730
Hpy188III	TCNNGA	1 cut(s)	215
Hpy8I	GTNNAC	1 cut(s)	553
HpyAV	CCTTC	3 cut(s)	376, 472, 781
HpyCH4III	ACNGT	1 cut(s)	235
HpyCH4V	TGCA	8 cut(s)	16, 94, 268, 373, 504, 651, 737, 766
HpyF10VI	GCNNNNNNNGC	1 cut(s)	743
HpyF3I	CTNAG	5 cut(s)	39, 76, 115, 189, 677
Hsp92II	CATG	3 cut(s)	25, 163, 803
HspAI	GCGC	1 cut(s)	34
Kzo9I	GATC	5 cut(s)	58, 72, 124, 297, 390
LguI	GCTCTTC	1 cut(s)	320
LmnI	GCTCC	3 cut(s)	85, 277, 838
Lsp1109I	GCAGC	2 cut(s)	349, 385
MaeI	CTAG	1 cut(s)	483
MaeIII	GTNAC	1 cut(s)	398
MalI	GATC	5 cut(s)	60, 74, 126, 299, 392
MboI	GATC	5 cut(s)	58, 72, 124, 297, 390
MboII	GAAGA	4 cut(s)	37, 68, 176, 337
MfeI	CAATTG	1 cut(s)	447
MflI	RGATCY	1 cut(s)	72
MhlI	GDGCHC	1 cut(s)	332
MluCI	AATT	7 cut(s)	95, 368, 447, 646, 661, 774, 782
MlyI	GAGTC	3 cut(s)	254, 548, 839
MnlI	CCTC	4 cut(s)	76, 346, 509, 697
MseI	TTAA	6 cut(s)	98, 438, 567, 666, 755, 807
MslI	CAYNNNNRTG	1 cut(s)	263
MspR9I	CCNGG	2 cut(s)	429, 701
MunI	CAATTG	1 cut(s)	447
MvaI	CCWGG	2 cut(s)	429, 701
MwoI	GCNNNNNNNGC	1 cut(s)	743
NdeII	GATC	5 cut(s)	58, 72, 124, 297, 390
NheI	GCTAGC	1 cut(s)	482
NlaIII	CATG	3 cut(s)	25, 163, 803
NmuCI	GTSAC	1 cut(s)	398
PciSI	GCTCTTC	1 cut(s)	320
PfeI	GAWTC	4 cut(s)	156, 211, 251, 535
PkrI	GCNGC	4 cut(s)	136, 310, 364, 375
PleI	GAGTC	3 cut(s)	253, 548, 839
PpsI	GAGTC	3 cut(s)	253, 548, 839
Psp6I	CCWGG	2 cut(s)	427, 699
PspGI	CCWGG	2 cut(s)	427, 699
PspPI	GGNCC	1 cut(s)	769
PstI	CTGCAG	1 cut(s)	768
PstNI	CAGNNNCTG	1 cut(s)	214
PsuI	RGATCY	1 cut(s)	72
RsaI	GTAC	1 cut(s)	20
RsaNI	GTAC	1 cut(s)	19
RseI	CAYNNNNRTG	1 cut(s)	263
SapI	GCTCTTC	1 cut(s)	320
SaqAI	TTAA	6 cut(s)	98, 438, 567, 666, 755, 807
SatI	GCNGC	4 cut(s)	135, 309, 363, 374
Sau3AI	GATC	5 cut(s)	58, 72, 124, 297, 390
Sau96I	GGNCC	1 cut(s)	769
SchI	GAGTC	3 cut(s)	254, 548, 839
ScrFI	CCNGG	2 cut(s)	429, 701
SduI	GDGCHC	1 cut(s)	332
SfcI	CTRYAG	2 cut(s)	411, 764
SinI	GGWCC	1 cut(s)	769
SmiMI	CAYNNNNRTG	1 cut(s)	263
SmlI	CTYRAG	1 cut(s)	471
SmoI	CTYRAG	1 cut(s)	471
Sse9I	AATT	7 cut(s)	95, 368, 447, 646, 661, 774, 782
SsiI	CCGC	2 cut(s)	135, 309
SspMI	CTAG	1 cut(s)	483
StyD4I	CCNGG	2 cut(s)	427, 699
StyI	CCWWGG	1 cut(s)	240
TaaI	ACNGT	1 cut(s)	235
TasI	AATT	7 cut(s)	95, 368, 447, 646, 661, 774, 782
TatI	WGTACW	1 cut(s)	18
TauI	GCSGC	2 cut(s)	137, 311
TfiI	GAWTC	4 cut(s)	156, 211, 251, 535
Tru1I	TTAA	6 cut(s)	98, 438, 567, 666, 755, 807
Tru9I	TTAA	6 cut(s)	98, 438, 567, 666, 755, 807
TscAI	CASTG	1 cut(s)	84
TseFI	GTSAC	1 cut(s)	398
TseI	GCWGC	2 cut(s)	362, 373
Tsp45I	GTSAC	1 cut(s)	398
TspDTI	ATGAA	7 cut(s)	38, 59, 148, 194, 243, 605, 638
TspRI	CASTG	1 cut(s)	84
VpaK11BI	GGWCC	1 cut(s)	769
XcmI	CCANNNNNNNNNTGG	1 cut(s)	76
XspI	CTAG	1 cut(s)	483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.