Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0003676

Physical Location & Seq

Genomic Coordinates Forward (+)

392995 .. 398109

Gene Structure 5115 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG002800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGAGGAGTATCTGCAGTACATGAAGACATTGCGCTCTCAAATGAACGATGTGGAGGATCAAGCAGCGAAGGTCTCAGTGGAGGAGCAAATGCAATTAACCACCATCCAGACCTTAGACAACGATCTCAATTCTGCAATATCCGAAACAAAACGATTCATGGAAGACATTGAGCAGATGAAGAAGGCTAAGGGTCAAATATGCTCACAGATTCTGGAAAGACAGAGAAAGATAGTTTGTTTGGAGTCAGATTCATCCGCCCTTATCCAGACTCTGGAGCTTATTGAACAAGAAAGGATCAACTTGGCTGCCAAGCTTATTAAGAAGAGCACTTACTACTTGAAAGTGTCAGGTGATATTAATGCCAAATTGCAGGAACAACAGGATTGGATTAATTGTCACCAGACTACTACAGAACATGGAGAACCTGGAATGGTTAAGGATACAATTGATGAGCAAAGAGTTGATATTCAAGGGAAGGCTATCATTGGTGACCACCTCTGCATGGATGATCAGACGAAGCAGGCTATTGAGCAACTAAATTGCAGGGAAAGTGATTTTAAGCCAGAGCTAAGGGCATTGGACATAAAGACCCTGGAGGACGAATACAATGCCCTTTTATCAGATAAAGCTGGAGAAACTGAATACTTGAAGTCTCTGCAGGACCAAATTGAGAAAATGAAGGGTATATCTCATGTGCTTAAGTGTGCTTGCGGAGAGGAATATAAAGTAGAACTGGACTCGTGTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

250

Amino Acids

28.68

Weight (kDa)

4.73

Isoelectric Point (pI)

50.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003676)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33500 AT1G33500 AT1G33500
fragaria_vesca	FvH4_2g00330 FvH4_2g00330 FvH4_2g00330 FvH4_2g00330 FvH4_2g00330 FvH4_2g00330 FvH4_2g00330 FvH4_2g00330 FvH4_2g00330 FvH4_2g00330 FvH4_2g00330 FvH4_2g04930
malus_domestica	MD05G1006300.v1.1
prunus_persica	Prupe.8G003600_v2.0.a1 Prupe.8G003600_v2.0.a1 Prupe.8G003600_v2.0.a1 Prupe.8G003600_v2.0.a1 Prupe.8G003600_v2.0.a1 Prupe.8G003600_v2.0.a1
pyrus_communis	pycom05g00150 pycom10g00200
rosa_chinensis	RchiOBHm_Chr6g0249621
rosa_laevigata	RLG00000015557
rosa_multiflora	Rmu_sc0006936.1_g000015
rosa_roxburghii	Rroxscaffold_7G00217480
rosa_rugosa	Rorug05G0494200 Rorug05G0494200
rosa_samantha	Rh6AG004000 Rh6BG006200 Rh6CG003000 Rh6DG002800
rosa_wichuraiana	Rw6G000440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	274
AciI	CCGC	2 cut(s)	258, 714
AclWI	GGATC	2 cut(s)	66, 305
AfaI	GTAC	1 cut(s)	20
AfiI	CCNNNNNNNGG	2 cut(s)	274, 505
AflII	CTTAAG	1 cut(s)	701
AgsI	TTSAA	4 cut(s)	287, 343, 473, 652
AjnI	CCWGG	2 cut(s)	427, 594
AluBI	AGCT	4 cut(s)	280, 316, 571, 632
AluI	AGCT	4 cut(s)	280, 316, 571, 632
Alw21I	GWGCWC	1 cut(s)	332
Alw26I	GTCTC	2 cut(s)	79, 660
AlwI	GGATC	2 cut(s)	66, 305
AlwNI	CAGNNNCTG	2 cut(s)	214, 274
ApeKI	GCWGC	2 cut(s)	65, 308
AseI	ATTAAT	2 cut(s)	360, 393
AspLEI	GCGC	1 cut(s)	36
AspS9I	GGNCC	1 cut(s)	664
AsuHPI	GGTGA	3 cut(s)	365, 392, 503
AvaII	GGWCC	1 cut(s)	664
BarI	GAAGNNNNNNTAC	2 cut(s)	317, 349
BauI	CACGAG	1 cut(s)	742
BbsI	GAAGAC	2 cut(s)	32, 171
Bbv12I	GWGCWC	1 cut(s)	332
BbvI	GCAGC	2 cut(s)	77, 295
BccI	CCATC	1 cut(s)	113
BcgI	CGANNNNNNTGC	2 cut(s)	593, 627
BciT130I	CCWGG	2 cut(s)	429, 596
BciVI	GTATCC	1 cut(s)	436
BclI	TGATCA	1 cut(s)	511
BcoDI	GTCTC	2 cut(s)	79, 660
BfmI	CTRYAG	3 cut(s)	14, 411, 659
BfrI	CTTAAG	1 cut(s)	701
BfuI	GTATCC	1 cut(s)	436
BisI	GCNGC	2 cut(s)	66, 309
BlsI	GCNGC	2 cut(s)	67, 310
Bme1390I	CCNGG	2 cut(s)	429, 596
Bme18I	GGWCC	1 cut(s)	664
BmgT120I	GGNCC	1 cut(s)	664
BmrFI	CCNGG	2 cut(s)	429, 596
BpiI	GAAGAC	2 cut(s)	32, 171
BpmI	CTGGAG	3 cut(s)	296, 617, 654
Bpu10I	CCTNAGC	2 cut(s)	189, 572
BsaI	GGTCTC	1 cut(s)	79
BsaJI	CCNNGG	1 cut(s)	594
Bsc4I	CCNNNNNNNGG	2 cut(s)	274, 505
Bse1I	ACTGG	1 cut(s)	741
Bse3DI	GCAATG	1 cut(s)	29
BseBI	CCWGG	2 cut(s)	429, 596
BseDI	CCNNGG	1 cut(s)	594
BseGI	GGATG	3 cut(s)	105, 254, 514
BseLI	CCNNNNNNNGG	2 cut(s)	274, 505
BseMI	GCAATG	1 cut(s)	29
BseMII	CTCAG	1 cut(s)	90
BseNI	ACTGG	1 cut(s)	741
BseRI	GAGGAG	2 cut(s)	20, 98
BseXI	GCAGC	2 cut(s)	77, 295
BsiHKAI	GWGCWC	1 cut(s)	332
BslI	CCNNNNNNNGG	2 cut(s)	274, 505
BsmAI	GTCTC	2 cut(s)	79, 660
Bso31I	GGTCTC	1 cut(s)	79
Bsp1286I	GDGCHC	1 cut(s)	332
Bsp143I	GATC	4 cut(s)	58, 124, 297, 511
BspACI	CCGC	2 cut(s)	258, 714
BspCNI	CTCAG	1 cut(s)	89
BspMAI	CTGCAG	2 cut(s)	18, 663
BspPI	GGATC	2 cut(s)	66, 305
BspQI	GCTCTTC	1 cut(s)	320
BspTI	CTTAAG	1 cut(s)	701
BspTNI	GGTCTC	1 cut(s)	79
BsrDI	GCAATG	1 cut(s)	29
BsrI	ACTGG	1 cut(s)	741
BssECI	CCNNGG	1 cut(s)	594
BssMI	GATC	4 cut(s)	58, 124, 297, 511
BssSI	CACGAG	1 cut(s)	742
Bst2BI	CACGAG	1 cut(s)	742
Bst2UI	CCWGG	2 cut(s)	429, 596
Bst6I	CTCTTC	1 cut(s)	320
BstAFI	CTTAAG	1 cut(s)	701
BstC8I	GCNNGC	2 cut(s)	525, 712
BstDEI	CTNAG	4 cut(s)	76, 115, 189, 572
BstEII	GGTNACC	1 cut(s)	491
BstF5I	GGATG	3 cut(s)	105, 254, 514
BstHHI	GCGC	1 cut(s)	36
BstKTI	GATC	4 cut(s)	61, 127, 300, 514
BstMAI	GTCTC	2 cut(s)	79, 660
BstMBI	GATC	4 cut(s)	58, 124, 297, 511
BstNI	CCWGG	2 cut(s)	429, 596
BstPI	GGTNACC	1 cut(s)	491
BstSCI	CCNGG	2 cut(s)	427, 594
BstSFI	CTRYAG	3 cut(s)	14, 411, 659
BstV1I	GCAGC	2 cut(s)	77, 295
BstV2I	GAAGAC	2 cut(s)	32, 171
BsuI	GTATCC	1 cut(s)	436
BtsCI	GGATG	3 cut(s)	105, 254, 514
BtsIMutI	CAGTG	1 cut(s)	84
Cac8I	GCNNGC	2 cut(s)	525, 712
CaiI	CAGNNNCTG	2 cut(s)	214, 274
CfoI	GCGC	1 cut(s)	36
Cfr13I	GGNCC	1 cut(s)	664
Csp6I	GTAC	1 cut(s)	19
CviAII	CATG	5 cut(s)	22, 160, 419, 505, 695
CviJI	RGCY	9 cut(s)	188, 280, 308, 316, 482, 527, 565, 571, 632
CviKI_1	RGCY	9 cut(s)	188, 280, 308, 316, 482, 527, 565, 571, 632
CviQI	GTAC	1 cut(s)	19
DdeI	CTNAG	4 cut(s)	76, 115, 189, 572
DpnI	GATC	4 cut(s)	60, 126, 299, 513
DpnII	GATC	4 cut(s)	58, 124, 297, 511
Eam1104I	CTCTTC	1 cut(s)	320
EarI	CTCTTC	1 cut(s)	320
EciI	GGCGGA	1 cut(s)	247
Eco31I	GGTCTC	1 cut(s)	79
Eco47I	GGWCC	1 cut(s)	664
Eco91I	GGTNACC	1 cut(s)	491
EcoO65I	GGTNACC	1 cut(s)	491
EcoRII	CCWGG	2 cut(s)	427, 594
FaeI	CATG	5 cut(s)	25, 163, 422, 508, 698
FatI	CATG	5 cut(s)	21, 159, 418, 504, 694
FbaI	TGATCA	1 cut(s)	511
Fnu4HI	GCNGC	2 cut(s)	66, 309
FokI	GGATG	3 cut(s)	92, 241, 521
Fsp4HI	GCNGC	2 cut(s)	66, 309
GlaI	GCGC	1 cut(s)	35
GluI	GCNGC	2 cut(s)	66, 309
GsuI	CTGGAG	3 cut(s)	296, 617, 654
HhaI	GCGC	1 cut(s)	36
Hin1II	CATG	5 cut(s)	25, 163, 422, 508, 698
Hin6I	GCGC	1 cut(s)	34
HinP1I	GCGC	1 cut(s)	34
HindIII	AAGCTT	1 cut(s)	314
HinfI	GANTC	6 cut(s)	156, 211, 245, 251, 271, 740
HphI	GGTGA	3 cut(s)	365, 392, 503
Hpy188I	TCNGA	4 cut(s)	145, 250, 516, 625
Hpy188III	TCNNGA	4 cut(s)	109, 215, 268, 275
HpyAV	CCTTC	4 cut(s)	64, 178, 472, 676
HpyCH4V	TGCA	7 cut(s)	16, 94, 137, 373, 504, 546, 661
HpyF3I	CTNAG	4 cut(s)	76, 115, 189, 572
Hsp92II	CATG	5 cut(s)	25, 163, 422, 508, 698
HspAI	GCGC	1 cut(s)	34
Ksp22I	TGATCA	1 cut(s)	511
Kzo9I	GATC	4 cut(s)	58, 124, 297, 511
LguI	GCTCTTC	1 cut(s)	320
LmnI	GCTCC	2 cut(s)	85, 277
Lsp1109I	GCAGC	2 cut(s)	77, 295
MaeIII	GTNAC	2 cut(s)	398, 491
MalI	GATC	4 cut(s)	60, 126, 299, 513
MboI	GATC	4 cut(s)	58, 124, 297, 511
MboII	GAAGA	4 cut(s)	37, 176, 193, 337
MfeI	CAATTG	1 cut(s)	447
MhlI	GDGCHC	1 cut(s)	332
MluCI	AATT	7 cut(s)	95, 130, 368, 394, 447, 541, 669
MlyI	GAGTC	3 cut(s)	254, 265, 734
MnlI	CCTC	5 cut(s)	49, 76, 509, 592, 712
MseI	TTAA	7 cut(s)	98, 321, 360, 393, 438, 561, 702
MspCI	CTTAAG	1 cut(s)	701
MspR9I	CCNGG	2 cut(s)	429, 596
MunI	CAATTG	1 cut(s)	447
MvaI	CCWGG	2 cut(s)	429, 596
NdeII	GATC	4 cut(s)	58, 124, 297, 511
NlaIII	CATG	5 cut(s)	25, 163, 422, 508, 698
NmuCI	GTSAC	2 cut(s)	398, 491
PciSI	GCTCTTC	1 cut(s)	320
PfeI	GAWTC	3 cut(s)	156, 211, 251
PflMI	CCANNNNNTGG	1 cut(s)	274
PkrI	GCNGC	2 cut(s)	67, 310
PleI	GAGTC	3 cut(s)	253, 265, 734
PpsI	GAGTC	3 cut(s)	253, 265, 734
PshBI	ATTAAT	2 cut(s)	360, 393
Psp6I	CCWGG	2 cut(s)	427, 594
PspEI	GGTNACC	1 cut(s)	491
PspGI	CCWGG	2 cut(s)	427, 594
PspPI	GGNCC	1 cut(s)	664
PstI	CTGCAG	2 cut(s)	18, 663
PstNI	CAGNNNCTG	2 cut(s)	214, 274
RsaI	GTAC	1 cut(s)	20
RsaNI	GTAC	1 cut(s)	19
SapI	GCTCTTC	1 cut(s)	320
SaqAI	TTAA	7 cut(s)	98, 321, 360, 393, 438, 561, 702
SatI	GCNGC	2 cut(s)	66, 309
Sau3AI	GATC	4 cut(s)	58, 124, 297, 511
Sau96I	GGNCC	1 cut(s)	664
SchI	GAGTC	3 cut(s)	254, 265, 734
ScrFI	CCNGG	2 cut(s)	429, 596
SduI	GDGCHC	1 cut(s)	332
SetI	ASST	9 cut(s)	75, 116, 282, 318, 355, 430, 501, 573, 634
SfcI	CTRYAG	3 cut(s)	14, 411, 659
SinI	GGWCC	1 cut(s)	664
SmlI	CTYRAG	1 cut(s)	701
SmoI	CTYRAG	1 cut(s)	701
Sse9I	AATT	7 cut(s)	95, 130, 368, 394, 447, 541, 669
SsiI	CCGC	2 cut(s)	258, 714
StyD4I	CCNGG	2 cut(s)	427, 594
TasI	AATT	7 cut(s)	95, 130, 368, 394, 447, 541, 669
TatI	WGTACW	1 cut(s)	18
TfiI	GAWTC	3 cut(s)	156, 211, 251
Tru1I	TTAA	7 cut(s)	98, 321, 360, 393, 438, 561, 702
Tru9I	TTAA	7 cut(s)	98, 321, 360, 393, 438, 561, 702
TscAI	CASTG	1 cut(s)	84
TseFI	GTSAC	2 cut(s)	398, 491
TseI	GCWGC	2 cut(s)	65, 308
Tsp45I	GTSAC	2 cut(s)	398, 491
TspDTI	ATGAA	6 cut(s)	38, 59, 148, 194, 243, 695
TspRI	CASTG	1 cut(s)	84
Van91I	CCANNNNNTGG	1 cut(s)	274
Vha464I	CTTAAG	1 cut(s)	701
VpaK11BI	GGWCC	1 cut(s)	664
VspI	ATTAAT	2 cut(s)	360, 393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.