Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0003676

Physical Location & Seq

Genomic Coordinates Reverse (-)

67831469 .. 67836203

Gene Structure 4735 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015557

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGAAGAGTATCTGCAGTACATGAAGACATTGCGCTCTCAAATGAACGATGTGGAGGATCAAGCAGCGAAGGTCTCAGTGGAGGAGCAAATGCAATTAACCACTATCCAGACCTTAGAGAACGATCTCAATTCTGCAATATCCGAAACAAAACGATTCATGGAAGACATTGAGCGGATGAAGAATGCTAAGGGTCAAGTATGCTCACAGATTCTGGAAAGACAGAGAAAGATACTTTGTTTGGAGTCAGATTCATCCACCCTTATCCAGACTCTGGAGCTTATTGAACAAGAAAGGATCAACTTGGCTGCCAAGCTTATTCAGAAGAGCACTTACTACTTGAAAGTGTCAGGTGATATCAATGCCAAATTGCAGCAACAACAGGATTGGATTAGTGGTCATCAGACTACTACAGAACTTGGAGAACCTGGAATGGTTAAGGATACAATTGATGAACAAAGAGTTGATATTCAAGGGAAGGCTAGCATTGGTGACCACCTCTACATGGATGATCAGGACAATGATGCAAGAAAGAACCTAATGGCGATGGTTGACTCTGCTAAAGTCAAGCTTGATGAGATTGCTAAAGTCAAGCTTGATGAGATTCTACGAATGAAATCTGAACTTATCAGAGAGAATTACAAGACGAAGCAGGCTATTGAGCAATTAAATTGCAGGGAAAATGATTTTAAGCCAGAGCTAAGGGCATTGGACATAAAGACCCTGGAGGATGAATACAATGCCCTTTTATCAGATAAAGCTGGAGAAACTGAATACTTGAAGTCTCTGCAGGACCAAATTGATATGATAAAGGGTATATCTCATGTGCTTAAATGTGCTTGCGGAGAGGAATACAAAGTGGAACTGGACTCTTGTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

294

Amino Acids

33.69

Weight (kDa)

4.77

Isoelectric Point (pI)

44.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003676)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33500 AT1G33500 AT1G33500
fragaria_vesca	FvH4_2g00330 FvH4_2g00330 FvH4_2g00330 FvH4_2g00330 FvH4_2g00330 FvH4_2g00330 FvH4_2g00330 FvH4_2g00330 FvH4_2g00330 FvH4_2g00330 FvH4_2g00330 FvH4_2g04930
malus_domestica	MD05G1006300.v1.1
prunus_persica	Prupe.8G003600_v2.0.a1 Prupe.8G003600_v2.0.a1 Prupe.8G003600_v2.0.a1 Prupe.8G003600_v2.0.a1 Prupe.8G003600_v2.0.a1 Prupe.8G003600_v2.0.a1
pyrus_communis	pycom05g00150 pycom10g00200
rosa_chinensis	RchiOBHm_Chr6g0249621
rosa_laevigata	RLG00000015557
rosa_multiflora	Rmu_sc0006936.1_g000015
rosa_roxburghii	Rroxscaffold_7G00217480
rosa_rugosa	Rorug05G0494200 Rorug05G0494200
rosa_samantha	Rh6AG004000 Rh6BG006200 Rh6CG003000 Rh6DG002800
rosa_wichuraiana	Rw6G000440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	274
AccBSI	CCGCTC	1 cut(s)	175
AciI	CCGC	2 cut(s)	175, 843
AclWI	GGATC	2 cut(s)	66, 305
AfaI	GTAC	1 cut(s)	20
AfiI	CCNNNNNNNGG	2 cut(s)	274, 505
AgsI	TTSAA	4 cut(s)	287, 343, 473, 781
AjnI	CCWGG	2 cut(s)	427, 723
AluBI	AGCT	6 cut(s)	280, 316, 571, 595, 700, 761
AluI	AGCT	6 cut(s)	280, 316, 571, 595, 700, 761
Alw21I	GWGCWC	1 cut(s)	332
Alw26I	GTCTC	2 cut(s)	79, 789
AlwI	GGATC	2 cut(s)	66, 305
AlwNI	CAGNNNCTG	2 cut(s)	214, 274
ApeKI	GCWGC	3 cut(s)	65, 308, 373
AspLEI	GCGC	1 cut(s)	36
AspS9I	GGNCC	1 cut(s)	793
AsuHPI	GGTGA	2 cut(s)	365, 503
AsuNHI	GCTAGC	1 cut(s)	482
AvaII	GGWCC	1 cut(s)	793
BarI	GAAGNNNNNNTAC	2 cut(s)	317, 349
BbsI	GAAGAC	2 cut(s)	32, 171
Bbv12I	GWGCWC	1 cut(s)	332
BbvI	GCAGC	3 cut(s)	77, 295, 385
BccI	CCATC	1 cut(s)	541
BciT130I	CCWGG	2 cut(s)	429, 725
BciVI	GTATCC	1 cut(s)	436
BclI	TGATCA	1 cut(s)	511
BcoDI	GTCTC	2 cut(s)	79, 789
BfaI	CTAG	1 cut(s)	483
BfmI	CTRYAG	3 cut(s)	14, 411, 788
BfuI	GTATCC	1 cut(s)	436
BisI	GCNGC	3 cut(s)	66, 309, 374
BlsI	GCNGC	3 cut(s)	67, 310, 375
Bme1390I	CCNGG	2 cut(s)	429, 725
Bme18I	GGWCC	1 cut(s)	793
BmgT120I	GGNCC	1 cut(s)	793
BmrFI	CCNGG	2 cut(s)	429, 725
BmsI	GCATC	1 cut(s)	514
BmtI	GCTAGC	1 cut(s)	486
BpiI	GAAGAC	2 cut(s)	32, 171
BpmI	CTGGAG	3 cut(s)	296, 746, 783
Bpu10I	CCTNAGC	2 cut(s)	189, 701
BsaI	GGTCTC	1 cut(s)	79
BsaJI	CCNNGG	1 cut(s)	723
Bsc4I	CCNNNNNNNGG	2 cut(s)	274, 505
Bse1I	ACTGG	1 cut(s)	870
Bse3DI	GCAATG	1 cut(s)	29
BseBI	CCWGG	2 cut(s)	429, 725
BseDI	CCNNGG	1 cut(s)	723
BseGI	GGATG	4 cut(s)	183, 254, 514, 736
BseLI	CCNNNNNNNGG	2 cut(s)	274, 505
BseMI	GCAATG	1 cut(s)	29
BseMII	CTCAG	1 cut(s)	90
BseNI	ACTGG	1 cut(s)	870
BseRI	GAGGAG	1 cut(s)	98
BseXI	GCAGC	3 cut(s)	77, 295, 385
BsiHKAI	GWGCWC	1 cut(s)	332
BslI	CCNNNNNNNGG	2 cut(s)	274, 505
BsmAI	GTCTC	2 cut(s)	79, 789
BsmI	GAATGC	1 cut(s)	190
Bso31I	GGTCTC	1 cut(s)	79
Bsp1286I	GDGCHC	1 cut(s)	332
Bsp143I	GATC	4 cut(s)	58, 124, 297, 511
BspACI	CCGC	2 cut(s)	175, 843
BspCNI	CTCAG	1 cut(s)	89
BspMAI	CTGCAG	2 cut(s)	18, 792
BspOI	GCTAGC	1 cut(s)	486
BspPI	GGATC	2 cut(s)	66, 305
BspQI	GCTCTTC	1 cut(s)	320
BspTNI	GGTCTC	1 cut(s)	79
BsrBI	CCGCTC	1 cut(s)	175
BsrDI	GCAATG	1 cut(s)	29
BsrI	ACTGG	1 cut(s)	870
BssECI	CCNNGG	1 cut(s)	723
BssMI	GATC	4 cut(s)	58, 124, 297, 511
Bst2UI	CCWGG	2 cut(s)	429, 725
Bst6I	CTCTTC	1 cut(s)	320
BstC8I	GCNNGC	3 cut(s)	484, 654, 841
BstDEI	CTNAG	4 cut(s)	76, 115, 189, 701
BstEII	GGTNACC	1 cut(s)	491
BstF5I	GGATG	4 cut(s)	183, 254, 514, 736
BstHHI	GCGC	1 cut(s)	36
BstKTI	GATC	4 cut(s)	61, 127, 300, 514
BstMAI	GTCTC	2 cut(s)	79, 789
BstMBI	GATC	4 cut(s)	58, 124, 297, 511
BstNI	CCWGG	2 cut(s)	429, 725
BstPI	GGTNACC	1 cut(s)	491
BstSCI	CCNGG	2 cut(s)	427, 723
BstSFI	CTRYAG	3 cut(s)	14, 411, 788
BstV1I	GCAGC	3 cut(s)	77, 295, 385
BstV2I	GAAGAC	2 cut(s)	32, 171
BsuI	GTATCC	1 cut(s)	436
BtgZI	GCGATG	1 cut(s)	560
BtsCI	GGATG	4 cut(s)	183, 254, 514, 736
BtsIMutI	CAGTG	1 cut(s)	84
Cac8I	GCNNGC	3 cut(s)	484, 654, 841
CaiI	CAGNNNCTG	2 cut(s)	214, 274
CfoI	GCGC	1 cut(s)	36
Cfr13I	GGNCC	1 cut(s)	793
Csp6I	GTAC	1 cut(s)	19
CviAII	CATG	4 cut(s)	22, 160, 505, 824
CviQI	GTAC	1 cut(s)	19
DdeI	CTNAG	4 cut(s)	76, 115, 189, 701
DpnI	GATC	4 cut(s)	60, 126, 299, 513
DpnII	GATC	4 cut(s)	58, 124, 297, 511
Eam1104I	CTCTTC	1 cut(s)	320
EarI	CTCTTC	1 cut(s)	320
Eco31I	GGTCTC	1 cut(s)	79
Eco32I	GATATC	1 cut(s)	358
Eco47I	GGWCC	1 cut(s)	793
Eco91I	GGTNACC	1 cut(s)	491
EcoO65I	GGTNACC	1 cut(s)	491
EcoRII	CCWGG	2 cut(s)	427, 723
EcoRV	GATATC	1 cut(s)	358
FaeI	CATG	4 cut(s)	25, 163, 508, 827
FaiI	YATR	9 cut(s)	23, 161, 202, 506, 716, 806, 818, 825, 880
FalI	AAGNNNNNCTT	4 cut(s)	555, 587, 579, 611
FatI	CATG	4 cut(s)	21, 159, 504, 823
FbaI	TGATCA	1 cut(s)	511
Fnu4HI	GCNGC	3 cut(s)	66, 309, 374
FokI	GGATG	4 cut(s)	190, 241, 521, 743
Fsp4HI	GCNGC	3 cut(s)	66, 309, 374
FspBI	CTAG	1 cut(s)	483
GlaI	GCGC	1 cut(s)	35
GluI	GCNGC	3 cut(s)	66, 309, 374
GsuI	CTGGAG	3 cut(s)	296, 746, 783
HhaI	GCGC	1 cut(s)	36
Hin1II	CATG	4 cut(s)	25, 163, 508, 827
Hin6I	GCGC	1 cut(s)	34
HinP1I	GCGC	1 cut(s)	34
HincII	GTYRAC	1 cut(s)	553
HindII	GTYRAC	1 cut(s)	553
HindIII	AAGCTT	3 cut(s)	314, 569, 593
HinfI	GANTC	8 cut(s)	156, 211, 245, 251, 271, 554, 604, 869
HphI	GGTGA	2 cut(s)	365, 503
Hpy166II	GTNNAC	1 cut(s)	553
Hpy188I	TCNGA	7 cut(s)	145, 250, 324, 405, 622, 632, 754
Hpy188III	TCNNGA	5 cut(s)	109, 215, 268, 275, 515
Hpy8I	GTNNAC	1 cut(s)	553
HpyAV	CCTTC	2 cut(s)	64, 472
HpyCH4V	TGCA	7 cut(s)	16, 94, 137, 373, 527, 675, 790
HpyF3I	CTNAG	4 cut(s)	76, 115, 189, 701
Hsp92II	CATG	4 cut(s)	25, 163, 508, 827
HspAI	GCGC	1 cut(s)	34
Ksp22I	TGATCA	1 cut(s)	511
Kzo9I	GATC	4 cut(s)	58, 124, 297, 511
LguI	GCTCTTC	1 cut(s)	320
LmnI	GCTCC	2 cut(s)	85, 277
Lsp1109I	GCAGC	3 cut(s)	77, 295, 385
LweI	GCATC	1 cut(s)	514
MaeI	CTAG	1 cut(s)	483
MaeIII	GTNAC	1 cut(s)	491
MalI	GATC	4 cut(s)	60, 126, 299, 513
MbiI	CCGCTC	1 cut(s)	175
MboI	GATC	4 cut(s)	58, 124, 297, 511
MboII	GAAGA	5 cut(s)	17, 37, 176, 193, 337
MfeI	CAATTG	1 cut(s)	447
MhlI	GDGCHC	1 cut(s)	332
MluCI	AATT	8 cut(s)	95, 130, 368, 447, 637, 665, 670, 798
MlyI	GAGTC	4 cut(s)	254, 265, 548, 863
MnlI	CCTC	5 cut(s)	49, 76, 509, 721, 841
MseI	TTAA	5 cut(s)	98, 438, 668, 690, 831
MspR9I	CCNGG	2 cut(s)	429, 725
MunI	CAATTG	1 cut(s)	447
Mva1269I	GAATGC	1 cut(s)	190
MvaI	CCWGG	2 cut(s)	429, 725
NdeII	GATC	4 cut(s)	58, 124, 297, 511
NheI	GCTAGC	1 cut(s)	482
NlaIII	CATG	4 cut(s)	25, 163, 508, 827
NmuCI	GTSAC	1 cut(s)	491
PciSI	GCTCTTC	1 cut(s)	320
PctI	GAATGC	1 cut(s)	190
PfeI	GAWTC	4 cut(s)	156, 211, 251, 604
PflMI	CCANNNNNTGG	1 cut(s)	274
PkrI	GCNGC	3 cut(s)	67, 310, 375
PleI	GAGTC	4 cut(s)	253, 265, 548, 863
PpsI	GAGTC	4 cut(s)	253, 265, 548, 863
Psp6I	CCWGG	2 cut(s)	427, 723
PspEI	GGTNACC	1 cut(s)	491
PspGI	CCWGG	2 cut(s)	427, 723
PspPI	GGNCC	1 cut(s)	793
PstI	CTGCAG	2 cut(s)	18, 792
PstNI	CAGNNNCTG	2 cut(s)	214, 274
RsaI	GTAC	1 cut(s)	20
RsaNI	GTAC	1 cut(s)	19
SapI	GCTCTTC	1 cut(s)	320
SaqAI	TTAA	5 cut(s)	98, 438, 668, 690, 831
SatI	GCNGC	3 cut(s)	66, 309, 374
Sau3AI	GATC	4 cut(s)	58, 124, 297, 511
Sau96I	GGNCC	1 cut(s)	793
SchI	GAGTC	4 cut(s)	254, 265, 548, 863
ScrFI	CCNGG	2 cut(s)	429, 725
SduI	GDGCHC	1 cut(s)	332
SfaNI	GCATC	1 cut(s)	514
SfcI	CTRYAG	3 cut(s)	14, 411, 788
SinI	GGWCC	1 cut(s)	793
Sse9I	AATT	8 cut(s)	95, 130, 368, 447, 637, 665, 670, 798
SsiI	CCGC	2 cut(s)	175, 843
SspMI	CTAG	1 cut(s)	483
StyD4I	CCNGG	2 cut(s)	427, 723
TasI	AATT	8 cut(s)	95, 130, 368, 447, 637, 665, 670, 798
TatI	WGTACW	1 cut(s)	18
TfiI	GAWTC	4 cut(s)	156, 211, 251, 604
Tru1I	TTAA	5 cut(s)	98, 438, 668, 690, 831
Tru9I	TTAA	5 cut(s)	98, 438, 668, 690, 831
TscAI	CASTG	1 cut(s)	84
TseFI	GTSAC	1 cut(s)	491
TseI	GCWGC	3 cut(s)	65, 308, 373
Tsp45I	GTSAC	1 cut(s)	491
TspDTI	ATGAA	8 cut(s)	38, 59, 148, 194, 243, 468, 629, 747
TspRI	CASTG	1 cut(s)	84
Van91I	CCANNNNNTGG	1 cut(s)	274
VpaK11BI	GGWCC	1 cut(s)	793
XspI	CTAG	1 cut(s)	483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.