Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0003676

Physical Location & Seq

Genomic Coordinates Forward (+)

1534585 .. 1541302

Gene Structure 6718 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1006300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGAAGACATTGCGCTCTCAGATGAACGATGTGGAAGATCAAGCTGCAAAGGTCTCAGTGGAAGAGCAAATGCAGTTGACCACCATTCAGACATTGGAGAACGATCTCAATTCTGCAATATCAGAAATAAAACGATTCATGGAAGACATTGAGCAGATGAAAAATGCCAAGGGTCAAGTATGCTCACTAATTTTGGAAAAGCAGAGAAAGATAGCTTCTTTGGAGGCTGATTCGTCCACCCTGATCCAGACTCTGGAGCTTATCGAACAAGAAAGAATCAACTTATCTTCCAAGCTTATAGAAAAGAGCACTCACTACATGAAGGTTAGAGAGGATGTCAATGCCAAATTGCAGCTGCAACAGGATTGGGTCTATTCTCACTGCACTCACATGGAACCGGGAGAGCATGGAATGGTTAAGGATAGATTTGATGAGAAAGAGTTTCAAGGGAAGGCTAGTTTTGATAACCACCTCAGCATGGACAACCAGGGCAATGATGCAAGGAAGAACCTAATGAACATGTTGGACTCTGCTAAAGCCAAGCTTGATGATATTTTACAAATGAACTCTGAACTTGTTATCGAGAACTGCAAGATGAAGCAGGCTATTGAGCAAGTAAATTTGAGGGAAAGTGATTTTAAGCCAGAGCTAAGGGCAATGGATATAAAGACCCTGGAAGAAGAATACGATGCTCTTCTATCAGACAAAGCTGGAGAAACTGAGTACTTGAAGACTCTGCAGGACCAAATTGAGAAACTGAGGGGAATATCTCATGTGGTTATATGCACTTGCGGAGAGGAATACAAAGTGGAAGTGGGCATCTGTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

277

Amino Acids

31.7

Weight (kDa)

4.87

Isoelectric Point (pI)

51.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003676)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33500 AT1G33500 AT1G33500
fragaria_vesca	FvH4_2g00330 FvH4_2g00330 FvH4_2g00330 FvH4_2g00330 FvH4_2g00330 FvH4_2g00330 FvH4_2g00330 FvH4_2g00330 FvH4_2g00330 FvH4_2g00330 FvH4_2g00330 FvH4_2g04930
malus_domestica	MD05G1006300.v1.1
prunus_persica	Prupe.8G003600_v2.0.a1 Prupe.8G003600_v2.0.a1 Prupe.8G003600_v2.0.a1 Prupe.8G003600_v2.0.a1 Prupe.8G003600_v2.0.a1 Prupe.8G003600_v2.0.a1
pyrus_communis	pycom05g00150 pycom10g00200
rosa_chinensis	RchiOBHm_Chr6g0249621
rosa_laevigata	RLG00000015557
rosa_multiflora	Rmu_sc0006936.1_g000015
rosa_roxburghii	Rroxscaffold_7G00217480
rosa_rugosa	Rorug05G0494200 Rorug05G0494200
rosa_samantha	Rh6AG004000 Rh6BG006200 Rh6CG003000 Rh6DG002800
rosa_wichuraiana	Rw6G000440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	253
AciI	CCGC	1 cut(s)	792
AclWI	GGATC	1 cut(s)	238
AcsI	RAATTY	1 cut(s)	619
AfaI	GTAC	1 cut(s)	725
AfiI	CCNNNNNNNGG	2 cut(s)	253, 478
AflIII	ACRYGT	1 cut(s)	519
AgsI	TTSAA	2 cut(s)	446, 730
AjnI	CCWGG	2 cut(s)	486, 672
AluBI	AGCT	8 cut(s)	44, 215, 259, 295, 355, 544, 649, 710
AluI	AGCT	8 cut(s)	44, 215, 259, 295, 355, 544, 649, 710
Alw21I	GWGCWC	1 cut(s)	311
Alw26I	GTCTC	1 cut(s)	58
AlwI	GGATC	1 cut(s)	238
AlwNI	CAGNNNCTG	1 cut(s)	253
ApeKI	GCWGC	3 cut(s)	44, 352, 355
ApoI	RAATTY	1 cut(s)	619
AspLEI	GCGC	1 cut(s)	15
AspS9I	GGNCC	1 cut(s)	742
AsuC2I	CCSGG	1 cut(s)	399
AvaII	GGWCC	1 cut(s)	742
BbsI	GAAGAC	3 cut(s)	11, 150, 737
Bbv12I	GWGCWC	1 cut(s)	311
BbvCI	CCTCAGC	1 cut(s)	473
BbvI	GCAGC	3 cut(s)	31, 342, 364
BciT130I	CCWGG	2 cut(s)	488, 674
BcnI	CCSGG	1 cut(s)	399
BcoDI	GTCTC	1 cut(s)	58
BfaI	CTAG	1 cut(s)	456
BfmI	CTRYAG	1 cut(s)	737
BisI	GCNGC	3 cut(s)	45, 353, 356
BlsI	GCNGC	3 cut(s)	46, 354, 357
BmcAI	AGTACT	1 cut(s)	725
Bme1390I	CCNGG	3 cut(s)	399, 488, 674
Bme18I	GGWCC	1 cut(s)	742
BmgT120I	GGNCC	1 cut(s)	742
BmiI	GGNNCC	1 cut(s)	396
BmrFI	CCNGG	3 cut(s)	399, 488, 674
BmsI	GCATC	2 cut(s)	487, 679
BpiI	GAAGAC	3 cut(s)	11, 150, 737
BpmI	CTGGAG	2 cut(s)	275, 732
Bpu10I	CCTNAGC	2 cut(s)	473, 650
BpuMI	CCSGG	1 cut(s)	399
BsaI	GGTCTC	1 cut(s)	58
BsaJI	CCNNGG	3 cut(s)	168, 487, 672
Bsc4I	CCNNNNNNNGG	2 cut(s)	253, 478
Bse3DI	GCAATG	3 cut(s)	8, 499, 663
BseBI	CCWGG	2 cut(s)	488, 674
BseDI	CCNNGG	3 cut(s)	168, 487, 672
BseGI	GGATG	1 cut(s)	340
BseLI	CCNNNNNNNGG	2 cut(s)	253, 478
BseMI	GCAATG	3 cut(s)	8, 499, 663
BseMII	CTCAG	5 cut(s)	32, 69, 487, 711, 749
BseXI	GCAGC	3 cut(s)	31, 342, 364
BsgI	GTGCAG	1 cut(s)	367
BsiHKAI	GWGCWC	1 cut(s)	311
BsiSI	CCGG	1 cut(s)	398
BslI	CCNNNNNNNGG	2 cut(s)	253, 478
BsmAI	GTCTC	1 cut(s)	58
Bso31I	GGTCTC	1 cut(s)	58
Bsp1286I	GDGCHC	1 cut(s)	311
Bsp143I	GATC	3 cut(s)	37, 103, 243
BspACI	CCGC	1 cut(s)	792
BspCNI	CTCAG	5 cut(s)	31, 68, 486, 712, 750
BspLI	GGNNCC	1 cut(s)	396
BspMAI	CTGCAG	1 cut(s)	741
BspPI	GGATC	1 cut(s)	238
BspQI	GCTCTTC	2 cut(s)	57, 699
BspTNI	GGTCTC	1 cut(s)	58
BsrDI	GCAATG	3 cut(s)	8, 499, 663
BssECI	CCNNGG	3 cut(s)	168, 487, 672
BssMI	GATC	3 cut(s)	37, 103, 243
BssT1I	CCWWGG	1 cut(s)	168
Bst2UI	CCWGG	2 cut(s)	488, 674
Bst6I	CTCTTC	2 cut(s)	57, 699
BstC8I	GCNNGC	1 cut(s)	603
BstDEI	CTNAG	6 cut(s)	18, 55, 473, 650, 720, 758
BstF5I	GGATG	1 cut(s)	340
BstHHI	GCGC	1 cut(s)	15
BstKTI	GATC	3 cut(s)	40, 106, 246
BstMAI	GTCTC	1 cut(s)	58
BstMBI	GATC	3 cut(s)	37, 103, 243
BstNI	CCWGG	2 cut(s)	488, 674
BstNSI	RCATGY	1 cut(s)	523
BstSCI	CCNGG	3 cut(s)	397, 486, 672
BstSFI	CTRYAG	1 cut(s)	737
BstV1I	GCAGC	3 cut(s)	31, 342, 364
BstV2I	GAAGAC	3 cut(s)	11, 150, 737
BtsCI	GGATG	1 cut(s)	340
BtsI	GCAGTG	1 cut(s)	379
BtsIMutI	CAGTG	2 cut(s)	63, 379
Cac8I	GCNNGC	1 cut(s)	603
CaiI	CAGNNNCTG	1 cut(s)	253
CfoI	GCGC	1 cut(s)	15
Cfr13I	GGNCC	1 cut(s)	742
Csp6I	GTAC	1 cut(s)	724
CviAII	CATG	7 cut(s)	139, 319, 391, 407, 478, 520, 773
CviQI	GTAC	1 cut(s)	724
DdeI	CTNAG	6 cut(s)	18, 55, 473, 650, 720, 758
DpnI	GATC	3 cut(s)	39, 105, 245
DpnII	GATC	3 cut(s)	37, 103, 243
Eam1104I	CTCTTC	2 cut(s)	57, 699
EarI	CTCTTC	2 cut(s)	57, 699
Eco130I	CCWWGG	1 cut(s)	168
Eco31I	GGTCTC	1 cut(s)	58
Eco47I	GGWCC	1 cut(s)	742
EcoRII	CCWGG	2 cut(s)	486, 672
EcoT14I	CCWWGG	1 cut(s)	168
ErhI	CCWWGG	1 cut(s)	168
FaeI	CATG	7 cut(s)	142, 322, 394, 410, 481, 523, 776
FalI	AAGNNNNNCTT	2 cut(s)	528, 560
FatI	CATG	7 cut(s)	138, 318, 390, 406, 477, 519, 772
Fnu4HI	GCNGC	3 cut(s)	45, 353, 356
FokI	GGATG	1 cut(s)	347
Fsp4HI	GCNGC	3 cut(s)	45, 353, 356
FspBI	CTAG	1 cut(s)	456
GlaI	GCGC	1 cut(s)	14
GluI	GCNGC	3 cut(s)	45, 353, 356
GsuI	CTGGAG	2 cut(s)	275, 732
HapII	CCGG	1 cut(s)	398
HhaI	GCGC	1 cut(s)	15
Hin1II	CATG	7 cut(s)	142, 322, 394, 410, 481, 523, 776
Hin6I	GCGC	1 cut(s)	13
HinP1I	GCGC	1 cut(s)	13
HincII	GTYRAC	1 cut(s)	78
HindII	GTYRAC	1 cut(s)	78
HindIII	AAGCTT	2 cut(s)	293, 542
HinfI	GANTC	6 cut(s)	135, 230, 250, 276, 527, 733
HpaII	CCGG	1 cut(s)	398
Hpy166II	GTNNAC	2 cut(s)	78, 237
Hpy188I	TCNGA	5 cut(s)	21, 90, 124, 571, 703
Hpy188III	TCNNGA	3 cut(s)	247, 254, 583
Hpy8I	GTNNAC	2 cut(s)	78, 237
HpyAV	CCTTC	2 cut(s)	316, 445
HpyF3I	CTNAG	6 cut(s)	18, 55, 473, 650, 720, 758
Hsp92II	CATG	7 cut(s)	142, 322, 394, 410, 481, 523, 776
HspAI	GCGC	1 cut(s)	13
Kzo9I	GATC	3 cut(s)	37, 103, 243
LguI	GCTCTTC	2 cut(s)	57, 699
LmnI	GCTCC	1 cut(s)	256
Lsp1109I	GCAGC	3 cut(s)	31, 342, 364
LweI	GCATC	2 cut(s)	487, 679
MaeI	CTAG	1 cut(s)	456
MalI	GATC	3 cut(s)	39, 105, 245
MboI	GATC	3 cut(s)	37, 103, 243
MhlI	GDGCHC	1 cut(s)	311
MluCI	AATT	5 cut(s)	109, 189, 347, 619, 747
MlyI	GAGTC	3 cut(s)	244, 521, 727
MmeI	TCCRAC	1 cut(s)	504
MnlI	CCTC	6 cut(s)	217, 325, 482, 618, 753, 790
MseI	TTAA	2 cut(s)	417, 639
MslI	CAYNNNNRTG	1 cut(s)	389
MspA1I	CMGCKG	1 cut(s)	355
MspI	CCGG	1 cut(s)	398
MspR9I	CCNGG	3 cut(s)	399, 488, 674
MvaI	CCWGG	2 cut(s)	488, 674
NciI	CCSGG	1 cut(s)	399
NdeII	GATC	3 cut(s)	37, 103, 243
NlaIII	CATG	7 cut(s)	142, 322, 394, 410, 481, 523, 776
NlaIV	GGNNCC	1 cut(s)	396
NspI	RCATGY	1 cut(s)	523
PciI	ACATGT	1 cut(s)	519
PciSI	GCTCTTC	2 cut(s)	57, 699
PfeI	GAWTC	3 cut(s)	135, 230, 276
PflMI	CCANNNNNTGG	1 cut(s)	253
PkrI	GCNGC	3 cut(s)	46, 354, 357
PleI	GAGTC	3 cut(s)	244, 521, 727
PpsI	GAGTC	3 cut(s)	244, 521, 727
PscI	ACATGT	1 cut(s)	519
Psp6I	CCWGG	2 cut(s)	486, 672
PspGI	CCWGG	2 cut(s)	486, 672
PspN4I	GGNNCC	1 cut(s)	396
PspPI	GGNCC	1 cut(s)	742
PstI	CTGCAG	1 cut(s)	741
PstNI	CAGNNNCTG	1 cut(s)	253
PvuII	CAGCTG	1 cut(s)	355
RsaI	GTAC	1 cut(s)	725
RsaNI	GTAC	1 cut(s)	724
RseI	CAYNNNNRTG	1 cut(s)	389
SapI	GCTCTTC	2 cut(s)	57, 699
SaqAI	TTAA	2 cut(s)	417, 639
SatI	GCNGC	3 cut(s)	45, 353, 356
Sau3AI	GATC	3 cut(s)	37, 103, 243
Sau96I	GGNCC	1 cut(s)	742
ScaI	AGTACT	1 cut(s)	725
SchI	GAGTC	3 cut(s)	244, 521, 727
ScrFI	CCNGG	3 cut(s)	399, 488, 674
SduI	GDGCHC	1 cut(s)	311
SfaNI	GCATC	2 cut(s)	487, 679
SfcI	CTRYAG	1 cut(s)	737
SinI	GGWCC	1 cut(s)	742
SmiMI	CAYNNNNRTG	1 cut(s)	389
Sse9I	AATT	5 cut(s)	109, 189, 347, 619, 747
SsiI	CCGC	1 cut(s)	792
SspMI	CTAG	1 cut(s)	456
StyD4I	CCNGG	3 cut(s)	397, 486, 672
StyI	CCWWGG	1 cut(s)	168
TaqI	TCGA	2 cut(s)	264, 582
TasI	AATT	5 cut(s)	109, 189, 347, 619, 747
TatI	WGTACW	1 cut(s)	723
TfiI	GAWTC	3 cut(s)	135, 230, 276
Tru1I	TTAA	2 cut(s)	417, 639
Tru9I	TTAA	2 cut(s)	417, 639
TscAI	CASTG	2 cut(s)	63, 386
TseI	GCWGC	3 cut(s)	44, 352, 355
TspDTI	ATGAA	8 cut(s)	17, 38, 127, 173, 335, 530, 578, 611
TspRI	CASTG	2 cut(s)	63, 386
Van91I	CCANNNNNTGG	1 cut(s)	253
VpaK11BI	GGWCC	1 cut(s)	742
XapI	RAATTY	1 cut(s)	619
XceI	RCATGY	1 cut(s)	523
XcmI	CCANNNNNNNNNTGG	1 cut(s)	91
XspI	CTAG	1 cut(s)	456
ZrmI	AGTACT	1 cut(s)	725

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.