Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0003676

Physical Location & Seq

Genomic Coordinates Forward (+)

799500 .. 804747

Gene Structure 5248 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G000440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGAGGAGTATCTGCAGTACATGAAGACATTGCGCTCTCAAATGAACGATGTGGAGGATCAAGCAGCGAAGGTCTCAGTGGAGGAGCAAATGCAATTAACCACCATCCAGACCTTAGACAACGATCTCAATTCTGCAATATCCGAAACAAAACGATTCATGGAAGACATTGAGCAGATGAAGAATGCTAAGGGTCAAGTATGCTCAGAGATTCTGGAAAGACAGAGAAAGATACTTTGTTTGGAGTCAGATTCATCCACCCTTATCCAGACTCTGGAGCTTATTGAACAAGAAAGGATCAACTTGGCTGCCAAGCTTATTCAGAAGAGCACTTACTACTTGAAAGTGTTAGGTGATATCAATGCCAAATTGCAGCAACAACAGGATTGGATTAGTGGTCACCAGACTACTACAGAACTTGGAGAACCTGGAATGGTTAAGGATACAATTGATGAGCAAAGAGTTGATATTCAAGGCAAGGCTGATCAGGACAATGATGCAAGAAAGAACCTAATGGCGATGGTTGACTCTGCTAAAGTCAAGCTTGATGAGATTCTACGAATGAAAGCTGAACTTATCGGAGAGAATTACAAGACGAAGCAGGCTATTGAGCAACTAAATTGCAGGGAAAATGATTTTAAGCCAGAGCTAAGGGCATTGGACATAAAGACCCTGGAGGACGAATACAGTGCCCTTTTATCAGATAAAGCTGGAGAAACTGAATACTTGAAGTCTCTGCAGGACCAAATTGATAAAATAAAGGGTATATCTCATGTGATTAAATGTGCTTGCGGAGAGGAATACAAAGTGGAACTGGACTCTTGTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

276

Amino Acids

31.6

Weight (kDa)

4.7

Isoelectric Point (pI)

44.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003676)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33500 AT1G33500 AT1G33500
fragaria_vesca	FvH4_2g00330 FvH4_2g00330 FvH4_2g00330 FvH4_2g00330 FvH4_2g00330 FvH4_2g00330 FvH4_2g00330 FvH4_2g00330 FvH4_2g00330 FvH4_2g00330 FvH4_2g00330 FvH4_2g04930
malus_domestica	MD05G1006300.v1.1
prunus_persica	Prupe.8G003600_v2.0.a1 Prupe.8G003600_v2.0.a1 Prupe.8G003600_v2.0.a1 Prupe.8G003600_v2.0.a1 Prupe.8G003600_v2.0.a1 Prupe.8G003600_v2.0.a1
pyrus_communis	pycom05g00150 pycom10g00200
rosa_chinensis	RchiOBHm_Chr6g0249621
rosa_laevigata	RLG00000015557
rosa_multiflora	Rmu_sc0006936.1_g000015
rosa_roxburghii	Rroxscaffold_7G00217480
rosa_rugosa	Rorug05G0494200 Rorug05G0494200
rosa_samantha	Rh6AG004000 Rh6BG006200 Rh6CG003000 Rh6DG002800
rosa_wichuraiana	Rw6G000440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	274
AciI	CCGC	1 cut(s)	792
AclWI	GGATC	2 cut(s)	66, 305
AfaI	GTAC	1 cut(s)	20
AfiI	CCNNNNNNNGG	1 cut(s)	274
AgsI	TTSAA	4 cut(s)	287, 343, 473, 730
AjnI	CCWGG	2 cut(s)	427, 672
AluBI	AGCT	6 cut(s)	280, 316, 544, 569, 649, 710
AluI	AGCT	6 cut(s)	280, 316, 544, 569, 649, 710
Alw21I	GWGCWC	1 cut(s)	332
Alw26I	GTCTC	2 cut(s)	79, 738
AlwI	GGATC	2 cut(s)	66, 305
AlwNI	CAGNNNCTG	1 cut(s)	274
ApeKI	GCWGC	3 cut(s)	65, 308, 373
AspLEI	GCGC	1 cut(s)	36
AspS9I	GGNCC	1 cut(s)	742
AsuHPI	GGTGA	2 cut(s)	365, 392
AvaII	GGWCC	1 cut(s)	742
BaeGI	GKGCMC	1 cut(s)	694
BarI	GAAGNNNNNNTAC	2 cut(s)	317, 349
BbsI	GAAGAC	2 cut(s)	32, 171
Bbv12I	GWGCWC	1 cut(s)	332
BbvI	GCAGC	3 cut(s)	77, 295, 385
BccI	CCATC	2 cut(s)	113, 514
BcgI	CGANNNNNNTGC	2 cut(s)	671, 705
BciT130I	CCWGG	2 cut(s)	429, 674
BciVI	GTATCC	1 cut(s)	436
BclI	TGATCA	1 cut(s)	484
BcoDI	GTCTC	2 cut(s)	79, 738
BfmI	CTRYAG	3 cut(s)	14, 411, 737
BfuI	GTATCC	1 cut(s)	436
BisI	GCNGC	3 cut(s)	66, 309, 374
BlsI	GCNGC	3 cut(s)	67, 310, 375
Bme1390I	CCNGG	2 cut(s)	429, 674
Bme18I	GGWCC	1 cut(s)	742
BmgT120I	GGNCC	1 cut(s)	742
BmrFI	CCNGG	2 cut(s)	429, 674
BmsI	GCATC	1 cut(s)	487
BpiI	GAAGAC	2 cut(s)	32, 171
BpmI	CTGGAG	3 cut(s)	296, 695, 732
Bpu10I	CCTNAGC	2 cut(s)	189, 650
BsaI	GGTCTC	1 cut(s)	79
BsaJI	CCNNGG	1 cut(s)	672
Bsc4I	CCNNNNNNNGG	1 cut(s)	274
Bse1I	ACTGG	1 cut(s)	819
Bse3DI	GCAATG	1 cut(s)	29
BseBI	CCWGG	2 cut(s)	429, 674
BseDI	CCNNGG	1 cut(s)	672
BseGI	GGATG	2 cut(s)	105, 254
BseLI	CCNNNNNNNGG	1 cut(s)	274
BseMI	GCAATG	1 cut(s)	29
BseMII	CTCAG	2 cut(s)	90, 219
BseNI	ACTGG	1 cut(s)	819
BseRI	GAGGAG	2 cut(s)	20, 98
BseSI	GKGCMC	1 cut(s)	694
BseXI	GCAGC	3 cut(s)	77, 295, 385
BsiHKAI	GWGCWC	1 cut(s)	332
BslI	CCNNNNNNNGG	1 cut(s)	274
BsmAI	GTCTC	2 cut(s)	79, 738
BsmI	GAATGC	1 cut(s)	190
Bso31I	GGTCTC	1 cut(s)	79
Bsp1286I	GDGCHC	2 cut(s)	332, 694
Bsp143I	GATC	4 cut(s)	58, 124, 297, 484
BspACI	CCGC	1 cut(s)	792
BspCNI	CTCAG	2 cut(s)	89, 218
BspMAI	CTGCAG	2 cut(s)	18, 741
BspPI	GGATC	2 cut(s)	66, 305
BspQI	GCTCTTC	1 cut(s)	320
BspTNI	GGTCTC	1 cut(s)	79
BsrDI	GCAATG	1 cut(s)	29
BsrI	ACTGG	1 cut(s)	819
BssECI	CCNNGG	1 cut(s)	672
BssMI	GATC	4 cut(s)	58, 124, 297, 484
Bst2UI	CCWGG	2 cut(s)	429, 674
Bst4CI	ACNGT	1 cut(s)	689
Bst6I	CTCTTC	1 cut(s)	320
BstC8I	GCNNGC	2 cut(s)	603, 790
BstDEI	CTNAG	5 cut(s)	76, 115, 189, 205, 650
BstEII	GGTNACC	1 cut(s)	398
BstF5I	GGATG	2 cut(s)	105, 254
BstHHI	GCGC	1 cut(s)	36
BstKTI	GATC	4 cut(s)	61, 127, 300, 487
BstMAI	GTCTC	2 cut(s)	79, 738
BstMBI	GATC	4 cut(s)	58, 124, 297, 484
BstNI	CCWGG	2 cut(s)	429, 674
BstPI	GGTNACC	1 cut(s)	398
BstSCI	CCNGG	2 cut(s)	427, 672
BstSFI	CTRYAG	3 cut(s)	14, 411, 737
BstSLI	GKGCMC	1 cut(s)	694
BstV1I	GCAGC	3 cut(s)	77, 295, 385
BstV2I	GAAGAC	2 cut(s)	32, 171
BsuI	GTATCC	1 cut(s)	436
BtgZI	GCGATG	1 cut(s)	533
BtsCI	GGATG	2 cut(s)	105, 254
BtsIMutI	CAGTG	2 cut(s)	84, 694
Cac8I	GCNNGC	2 cut(s)	603, 790
CaiI	CAGNNNCTG	1 cut(s)	274
CfoI	GCGC	1 cut(s)	36
Cfr13I	GGNCC	1 cut(s)	742
Csp6I	GTAC	1 cut(s)	19
CviAII	CATG	3 cut(s)	22, 160, 773
CviQI	GTAC	1 cut(s)	19
DdeI	CTNAG	5 cut(s)	76, 115, 189, 205, 650
DpnI	GATC	4 cut(s)	60, 126, 299, 486
DpnII	GATC	4 cut(s)	58, 124, 297, 484
Eam1104I	CTCTTC	1 cut(s)	320
EarI	CTCTTC	1 cut(s)	320
Eco31I	GGTCTC	1 cut(s)	79
Eco32I	GATATC	1 cut(s)	358
Eco47I	GGWCC	1 cut(s)	742
Eco91I	GGTNACC	1 cut(s)	398
EcoO65I	GGTNACC	1 cut(s)	398
EcoRII	CCWGG	2 cut(s)	427, 672
EcoRV	GATATC	1 cut(s)	358
FaeI	CATG	3 cut(s)	25, 163, 776
FaiI	YATR	7 cut(s)	23, 161, 202, 665, 767, 774, 829
FalI	AAGNNNNNCTT	4 cut(s)	528, 560, 558, 590
FatI	CATG	3 cut(s)	21, 159, 772
FbaI	TGATCA	1 cut(s)	484
Fnu4HI	GCNGC	3 cut(s)	66, 309, 374
FokI	GGATG	2 cut(s)	92, 241
Fsp4HI	GCNGC	3 cut(s)	66, 309, 374
GlaI	GCGC	1 cut(s)	35
GluI	GCNGC	3 cut(s)	66, 309, 374
GsuI	CTGGAG	3 cut(s)	296, 695, 732
HhaI	GCGC	1 cut(s)	36
Hin1II	CATG	3 cut(s)	25, 163, 776
Hin6I	GCGC	1 cut(s)	34
HinP1I	GCGC	1 cut(s)	34
HincII	GTYRAC	1 cut(s)	526
HindII	GTYRAC	1 cut(s)	526
HindIII	AAGCTT	2 cut(s)	314, 542
HinfI	GANTC	8 cut(s)	156, 211, 245, 251, 271, 527, 553, 818
HphI	GGTGA	2 cut(s)	365, 392
Hpy166II	GTNNAC	1 cut(s)	526
Hpy188I	TCNGA	6 cut(s)	145, 208, 250, 324, 581, 703
Hpy188III	TCNNGA	5 cut(s)	109, 215, 268, 275, 488
Hpy8I	GTNNAC	1 cut(s)	526
HpyAV	CCTTC	1 cut(s)	64
HpyCH4III	ACNGT	1 cut(s)	689
HpyCH4V	TGCA	7 cut(s)	16, 94, 137, 373, 500, 624, 739
HpyF3I	CTNAG	5 cut(s)	76, 115, 189, 205, 650
Hsp92II	CATG	3 cut(s)	25, 163, 776
HspAI	GCGC	1 cut(s)	34
Ksp22I	TGATCA	1 cut(s)	484
Kzo9I	GATC	4 cut(s)	58, 124, 297, 484
LguI	GCTCTTC	1 cut(s)	320
LmnI	GCTCC	2 cut(s)	85, 277
Lsp1109I	GCAGC	3 cut(s)	77, 295, 385
LweI	GCATC	1 cut(s)	487
MaeIII	GTNAC	1 cut(s)	398
MalI	GATC	4 cut(s)	60, 126, 299, 486
MboI	GATC	4 cut(s)	58, 124, 297, 484
MboII	GAAGA	4 cut(s)	37, 176, 193, 337
MfeI	CAATTG	1 cut(s)	447
MhlI	GDGCHC	2 cut(s)	332, 694
MluCI	AATT	7 cut(s)	95, 130, 368, 447, 586, 619, 747
MlyI	GAGTC	4 cut(s)	254, 265, 521, 812
MnlI	CCTC	4 cut(s)	49, 76, 670, 790
MseI	TTAA	4 cut(s)	98, 438, 639, 780
MspR9I	CCNGG	2 cut(s)	429, 674
MunI	CAATTG	1 cut(s)	447
Mva1269I	GAATGC	1 cut(s)	190
MvaI	CCWGG	2 cut(s)	429, 674
NdeII	GATC	4 cut(s)	58, 124, 297, 484
NlaIII	CATG	3 cut(s)	25, 163, 776
NmuCI	GTSAC	1 cut(s)	398
PciSI	GCTCTTC	1 cut(s)	320
PctI	GAATGC	1 cut(s)	190
PfeI	GAWTC	4 cut(s)	156, 211, 251, 553
PflMI	CCANNNNNTGG	1 cut(s)	274
PkrI	GCNGC	3 cut(s)	67, 310, 375
PleI	GAGTC	4 cut(s)	253, 265, 521, 812
PpsI	GAGTC	4 cut(s)	253, 265, 521, 812
Psp6I	CCWGG	2 cut(s)	427, 672
PspEI	GGTNACC	1 cut(s)	398
PspGI	CCWGG	2 cut(s)	427, 672
PspPI	GGNCC	1 cut(s)	742
PstI	CTGCAG	2 cut(s)	18, 741
PstNI	CAGNNNCTG	1 cut(s)	274
RsaI	GTAC	1 cut(s)	20
RsaNI	GTAC	1 cut(s)	19
SapI	GCTCTTC	1 cut(s)	320
SaqAI	TTAA	4 cut(s)	98, 438, 639, 780
SatI	GCNGC	3 cut(s)	66, 309, 374
Sau3AI	GATC	4 cut(s)	58, 124, 297, 484
Sau96I	GGNCC	1 cut(s)	742
SchI	GAGTC	4 cut(s)	254, 265, 521, 812
ScrFI	CCNGG	2 cut(s)	429, 674
SduI	GDGCHC	2 cut(s)	332, 694
SfaNI	GCATC	1 cut(s)	487
SfcI	CTRYAG	3 cut(s)	14, 411, 737
SinI	GGWCC	1 cut(s)	742
Sse9I	AATT	7 cut(s)	95, 130, 368, 447, 586, 619, 747
SsiI	CCGC	1 cut(s)	792
StyD4I	CCNGG	2 cut(s)	427, 672
TaaI	ACNGT	1 cut(s)	689
TasI	AATT	7 cut(s)	95, 130, 368, 447, 586, 619, 747
TatI	WGTACW	1 cut(s)	18
TfiI	GAWTC	4 cut(s)	156, 211, 251, 553
Tru1I	TTAA	4 cut(s)	98, 438, 639, 780
Tru9I	TTAA	4 cut(s)	98, 438, 639, 780
TscAI	CASTG	2 cut(s)	84, 694
TseFI	GTSAC	1 cut(s)	398
TseI	GCWGC	3 cut(s)	65, 308, 373
Tsp45I	GTSAC	1 cut(s)	398
TspDTI	ATGAA	6 cut(s)	38, 59, 148, 194, 243, 578
TspRI	CASTG	2 cut(s)	84, 694
Van91I	CCANNNNNTGG	1 cut(s)	274
VpaK11BI	GGWCC	1 cut(s)	742

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.