Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0003676

Physical Location & Seq

Genomic Coordinates Forward (+)

3871335 .. 3876028

Gene Structure 4694 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g04930.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGGAGAAGTACTTACAGTACATGAAGATACTGCGCTCTCAGATGAACGATGTGGAAGATCAAGCTACGAAGGTCTCAGTGGAGGAGCAGATGCAATTGACCACTATTCAGACCTTAGAGAACGATCTTAATTCCGCAATATCCGAAACAAAACGATTCATGGAAGACATTGAACAGATGAATAAGGCTAAGGGTCAAATATGCTCACAGATTCAGGAAAGACAGAGAAGGATAGTTTCTCTGGAGTCTGATTCATCCACCCTTATCCAGAACTTGGAGCTTATTGAACAAGAAAGGATCAACCTGGCCGCCAAGCTTATTGAGAAGAGCACTTACTACTTGAAAGTTTCAGAGGATATCACTGCTAAATGGCAGCAACAAAAGACTACTACAGATCTTGGAGAACCTGGAATGGTTAAGGATACAATTGATGAGCAAAGAGTTGATACTCAGGGGAAGGGTAGCATTGGTGACCACCTCTGCATAACTGATCAGGGCAATAACGCAAGAAAGAATCCAACGGAGATGGTTGACTCTGCTAAAGTCAAGCTTGATAAGATTTTACAAATGAAATCTGAACTTGTCATGGAGAACTACAAGATGAAGCAAGCTATTGAGCAAGAAAATTGCAGGGAAAGTAATTTTAAGCATCGTAAGACTTTTGTGTTTAAGGCCTACTCAATCCCAACTCAAGTAGCTGCACTCCAAAAATATCAAAGGGTCTATGGCTCATCTCCTTCAAAAGGAGAACACCTTAAGCAGATATCAACACCAGATATTGCTAAATGCTTCTTTAACAGCAGCCTTGGCACGTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

273

Amino Acids

31.27

Weight (kDa)

6.38

Isoelectric Point (pI)

43.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003676)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33500 AT1G33500 AT1G33500
fragaria_vesca	FvH4_2g00330 FvH4_2g00330 FvH4_2g00330 FvH4_2g00330 FvH4_2g00330 FvH4_2g00330 FvH4_2g00330 FvH4_2g00330 FvH4_2g00330 FvH4_2g00330 FvH4_2g00330 FvH4_2g04930
malus_domestica	MD05G1006300.v1.1
prunus_persica	Prupe.8G003600_v2.0.a1 Prupe.8G003600_v2.0.a1 Prupe.8G003600_v2.0.a1 Prupe.8G003600_v2.0.a1 Prupe.8G003600_v2.0.a1 Prupe.8G003600_v2.0.a1
pyrus_communis	pycom05g00150 pycom10g00200
rosa_chinensis	RchiOBHm_Chr6g0249621
rosa_laevigata	RLG00000015557
rosa_multiflora	Rmu_sc0006936.1_g000015
rosa_roxburghii	Rroxscaffold_7G00217480
rosa_rugosa	Rorug05G0494200 Rorug05G0494200
rosa_samantha	Rh6AG004000 Rh6BG006200 Rh6CG003000 Rh6DG002800
rosa_wichuraiana	Rw6G000440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	274
AciI	CCGC	2 cut(s)	135, 309
AclWI	GGATC	1 cut(s)	305
AcoI	YGGCCR	1 cut(s)	306
AfaI	GTAC	3 cut(s)	11, 20, 815
AfiI	CCNNNNNNNGG	2 cut(s)	274, 743
AflII	CTTAAG	1 cut(s)	755
AgsI	TTSAA	4 cut(s)	173, 287, 343, 741
AjnI	CCWGG	2 cut(s)	303, 406
AluBI	AGCT	6 cut(s)	65, 280, 316, 550, 611, 698
AluI	AGCT	6 cut(s)	65, 280, 316, 550, 611, 698
Alw21I	GWGCWC	1 cut(s)	332
Alw26I	GTCTC	1 cut(s)	79
AlwI	GGATC	1 cut(s)	305
AoxI	GGCC	2 cut(s)	306, 672
ApeKI	GCWGC	3 cut(s)	373, 698, 801
AspLEI	GCGC	1 cut(s)	36
AsuHPI	GGTGA	1 cut(s)	482
BarI	GAAGNNNNNNTAC	2 cut(s)	317, 349
BbsI	GAAGAC	1 cut(s)	171
Bbv12I	GWGCWC	1 cut(s)	332
BbvI	GCAGC	3 cut(s)	385, 685, 813
BccI	CCATC	1 cut(s)	520
BciT130I	CCWGG	2 cut(s)	305, 408
BciVI	GTATCC	1 cut(s)	415
BclI	TGATCA	1 cut(s)	490
BcoDI	GTCTC	1 cut(s)	79
BfmI	CTRYAG	1 cut(s)	390
BfrI	CTTAAG	1 cut(s)	755
BfuI	GTATCC	1 cut(s)	415
BglII	AGATCT	1 cut(s)	394
BisI	GCNGC	4 cut(s)	309, 374, 699, 802
BlsI	GCNGC	4 cut(s)	310, 375, 700, 803
BmcAI	AGTACT	1 cut(s)	11
Bme1390I	CCNGG	2 cut(s)	305, 408
BmrFI	CCNGG	2 cut(s)	305, 408
BmsI	GCATC	2 cut(s)	81, 658
BpiI	GAAGAC	1 cut(s)	171
BpmI	CTGGAG	1 cut(s)	263
Bpu10I	CCTNAGC	1 cut(s)	189
BpuEI	CTTGAG	1 cut(s)	675
BsaAI	YACGTR	1 cut(s)	813
BsaI	GGTCTC	1 cut(s)	79
BsaJI	CCNNGG	1 cut(s)	805
Bsc4I	CCNNNNNNNGG	2 cut(s)	274, 743
BseBI	CCWGG	2 cut(s)	305, 408
BseDI	CCNNGG	1 cut(s)	805
BseGI	GGATG	1 cut(s)	254
BseLI	CCNNNNNNNGG	2 cut(s)	274, 743
BseMII	CTCAG	3 cut(s)	53, 90, 464
BseRI	GAGGAG	1 cut(s)	98
BseXI	GCAGC	3 cut(s)	385, 685, 813
BsgI	GTGCAG	1 cut(s)	684
BshFI	GGCC	2 cut(s)	308, 674
BsiHKAI	GWGCWC	1 cut(s)	332
BslI	CCNNNNNNNGG	2 cut(s)	274, 743
BsmAI	GTCTC	1 cut(s)	79
BsnI	GGCC	2 cut(s)	308, 674
Bso31I	GGTCTC	1 cut(s)	79
Bsp1286I	GDGCHC	1 cut(s)	332
Bsp143I	GATC	5 cut(s)	58, 124, 297, 394, 490
BspACI	CCGC	2 cut(s)	135, 309
BspANI	GGCC	2 cut(s)	308, 674
BspCNI	CTCAG	3 cut(s)	52, 89, 463
BspPI	GGATC	1 cut(s)	305
BspQI	GCTCTTC	1 cut(s)	320
BspTI	CTTAAG	1 cut(s)	755
BspTNI	GGTCTC	1 cut(s)	79
BssECI	CCNNGG	1 cut(s)	805
BssMI	GATC	5 cut(s)	58, 124, 297, 394, 490
BssT1I	CCWWGG	1 cut(s)	805
Bst2UI	CCWGG	2 cut(s)	305, 408
Bst4CI	ACNGT	1 cut(s)	18
Bst6I	CTCTTC	1 cut(s)	320
BstAFI	CTTAAG	1 cut(s)	755
BstBAI	YACGTR	1 cut(s)	813
BstC8I	GCNNGC	1 cut(s)	609
BstDEI	CTNAG	5 cut(s)	39, 76, 115, 189, 450
BstEII	GGTNACC	1 cut(s)	470
BstENI	CCTNNNNNAGG	1 cut(s)	741
BstF5I	GGATG	1 cut(s)	254
BstHHI	GCGC	1 cut(s)	36
BstKTI	GATC	5 cut(s)	61, 127, 300, 397, 493
BstMAI	GTCTC	1 cut(s)	79
BstMBI	GATC	5 cut(s)	58, 124, 297, 394, 490
BstMWI	GCNNNNNNNGC	1 cut(s)	807
BstNI	CCWGG	2 cut(s)	305, 408
BstPI	GGTNACC	1 cut(s)	470
BstSCI	CCNGG	2 cut(s)	303, 406
BstSFI	CTRYAG	1 cut(s)	390
BstV1I	GCAGC	3 cut(s)	385, 685, 813
BstV2I	GAAGAC	1 cut(s)	171
BstX2I	RGATCY	1 cut(s)	394
BstYI	RGATCY	1 cut(s)	394
BsuI	GTATCC	1 cut(s)	415
BsuRI	GGCC	2 cut(s)	308, 674
BtsCI	GGATG	1 cut(s)	254
BtsI	GCAGTG	1 cut(s)	360
BtsIMutI	CAGTG	2 cut(s)	84, 360
Cac8I	GCNNGC	1 cut(s)	609
CfoI	GCGC	1 cut(s)	36
Csp6I	GTAC	3 cut(s)	10, 19, 814
CviAII	CATG	3 cut(s)	22, 160, 586
CviQI	GTAC	3 cut(s)	10, 19, 814
DdeI	CTNAG	5 cut(s)	39, 76, 115, 189, 450
DpnI	GATC	5 cut(s)	60, 126, 299, 396, 492
DpnII	GATC	5 cut(s)	58, 124, 297, 394, 490
EaeI	YGGCCR	1 cut(s)	306
Eam1104I	CTCTTC	1 cut(s)	320
EarI	CTCTTC	1 cut(s)	320
Eco130I	CCWWGG	1 cut(s)	805
Eco147I	AGGCCT	1 cut(s)	674
Eco31I	GGTCTC	1 cut(s)	79
Eco32I	GATATC	2 cut(s)	358, 765
Eco91I	GGTNACC	1 cut(s)	470
EcoNI	CCTNNNNNAGG	1 cut(s)	741
EcoO65I	GGTNACC	1 cut(s)	470
EcoRII	CCWGG	2 cut(s)	303, 406
EcoRV	GATATC	2 cut(s)	358, 765
EcoT14I	CCWWGG	1 cut(s)	805
ErhI	CCWWGG	1 cut(s)	805
FaeI	CATG	3 cut(s)	25, 163, 589
FaiI	YATR	6 cut(s)	23, 161, 202, 485, 587, 726
FalI	AAGNNNNNCTT	2 cut(s)	534, 566
FatI	CATG	3 cut(s)	21, 159, 585
FbaI	TGATCA	1 cut(s)	490
Fnu4HI	GCNGC	4 cut(s)	309, 374, 699, 802
FokI	GGATG	1 cut(s)	241
Fsp4HI	GCNGC	4 cut(s)	309, 374, 699, 802
GlaI	GCGC	1 cut(s)	35
GluI	GCNGC	4 cut(s)	309, 374, 699, 802
GsuI	CTGGAG	1 cut(s)	263
HaeIII	GGCC	2 cut(s)	308, 674
HhaI	GCGC	1 cut(s)	36
Hin1II	CATG	3 cut(s)	25, 163, 589
Hin6I	GCGC	1 cut(s)	34
HinP1I	GCGC	1 cut(s)	34
HincII	GTYRAC	1 cut(s)	532
HindII	GTYRAC	1 cut(s)	532
HindIII	AAGCTT	2 cut(s)	314, 548
HinfI	GANTC	6 cut(s)	156, 211, 245, 251, 514, 533
HphI	GGTGA	1 cut(s)	482
Hpy166II	GTNNAC	1 cut(s)	532
Hpy188I	TCNGA	6 cut(s)	42, 111, 145, 250, 352, 577
Hpy188III	TCNNGA	3 cut(s)	215, 242, 268
Hpy8I	GTNNAC	1 cut(s)	532
HpyAV	CCTTC	4 cut(s)	64, 222, 451, 747
HpyCH4III	ACNGT	1 cut(s)	18
HpyCH4IV	ACGT	1 cut(s)	812
HpyCH4V	TGCA	4 cut(s)	94, 483, 630, 701
HpyF10VI	GCNNNNNNNGC	1 cut(s)	807
HpyF3I	CTNAG	5 cut(s)	39, 76, 115, 189, 450
HpySE526I	ACGT	1 cut(s)	812
Hsp92II	CATG	3 cut(s)	25, 163, 589
HspAI	GCGC	1 cut(s)	34
Ksp22I	TGATCA	1 cut(s)	490
Kzo9I	GATC	5 cut(s)	58, 124, 297, 394, 490
LguI	GCTCTTC	1 cut(s)	320
LmnI	GCTCC	2 cut(s)	85, 277
Lsp1109I	GCAGC	3 cut(s)	385, 685, 813
LweI	GCATC	2 cut(s)	81, 658
MaeII	ACGT	1 cut(s)	812
MaeIII	GTNAC	1 cut(s)	470
MalI	GATC	5 cut(s)	60, 126, 299, 396, 492
MboI	GATC	5 cut(s)	58, 124, 297, 394, 490
MboII	GAAGA	4 cut(s)	37, 68, 176, 337
MfeI	CAATTG	2 cut(s)	95, 426
MflI	RGATCY	1 cut(s)	394
MhlI	GDGCHC	1 cut(s)	332
MluCI	AATT	5 cut(s)	95, 130, 426, 625, 640
MlyI	GAGTC	2 cut(s)	254, 527
MmeI	TCCRAC	1 cut(s)	542
MnlI	CCTC	3 cut(s)	76, 346, 488
MseI	TTAA	6 cut(s)	129, 417, 645, 669, 756, 795
MspCI	CTTAAG	1 cut(s)	755
MspR9I	CCNGG	2 cut(s)	305, 408
MunI	CAATTG	2 cut(s)	95, 426
MvaI	CCWGG	2 cut(s)	305, 408
MwoI	GCNNNNNNNGC	1 cut(s)	807
NdeII	GATC	5 cut(s)	58, 124, 297, 394, 490
NlaIII	CATG	3 cut(s)	25, 163, 589
NmuCI	GTSAC	1 cut(s)	470
PceI	AGGCCT	1 cut(s)	674
PciSI	GCTCTTC	1 cut(s)	320
PfeI	GAWTC	4 cut(s)	156, 211, 251, 514
PflMI	CCANNNNNTGG	1 cut(s)	274
PkrI	GCNGC	4 cut(s)	310, 375, 700, 803
PleI	GAGTC	2 cut(s)	253, 527
PpsI	GAGTC	2 cut(s)	253, 527
Ppu21I	YACGTR	1 cut(s)	813
Psp6I	CCWGG	2 cut(s)	303, 406
PspEI	GGTNACC	1 cut(s)	470
PspGI	CCWGG	2 cut(s)	303, 406
PsuI	RGATCY	1 cut(s)	394
RsaI	GTAC	3 cut(s)	11, 20, 815
RsaNI	GTAC	3 cut(s)	10, 19, 814
SapI	GCTCTTC	1 cut(s)	320
SaqAI	TTAA	6 cut(s)	129, 417, 645, 669, 756, 795
SatI	GCNGC	4 cut(s)	309, 374, 699, 802
Sau3AI	GATC	5 cut(s)	58, 124, 297, 394, 490
ScaI	AGTACT	1 cut(s)	11
SchI	GAGTC	2 cut(s)	254, 527
ScrFI	CCNGG	2 cut(s)	305, 408
SduI	GDGCHC	1 cut(s)	332
SfaNI	GCATC	2 cut(s)	81, 658
SfcI	CTRYAG	1 cut(s)	390
SmlI	CTYRAG	2 cut(s)	690, 755
SmoI	CTYRAG	2 cut(s)	690, 755
Sse9I	AATT	5 cut(s)	95, 130, 426, 625, 640
SseBI	AGGCCT	1 cut(s)	674
SsiI	CCGC	2 cut(s)	135, 309
StuI	AGGCCT	1 cut(s)	674
StyD4I	CCNGG	2 cut(s)	303, 406
StyI	CCWWGG	1 cut(s)	805
TaaI	ACNGT	1 cut(s)	18
TaiI	ACGT	1 cut(s)	815
TasI	AATT	5 cut(s)	95, 130, 426, 625, 640
TatI	WGTACW	2 cut(s)	9, 18
TauI	GCSGC	1 cut(s)	311
TfiI	GAWTC	4 cut(s)	156, 211, 251, 514
Tru1I	TTAA	6 cut(s)	129, 417, 645, 669, 756, 795
Tru9I	TTAA	6 cut(s)	129, 417, 645, 669, 756, 795
TscAI	CASTG	2 cut(s)	84, 367
TseFI	GTSAC	1 cut(s)	470
TseI	GCWGC	3 cut(s)	373, 698, 801
Tsp45I	GTSAC	1 cut(s)	470
TspDTI	ATGAA	7 cut(s)	38, 59, 148, 194, 243, 584, 617
TspGWI	ACGGA	1 cut(s)	536
TspRI	CASTG	2 cut(s)	84, 367
Van91I	CCANNNNNTGG	1 cut(s)	274
Vha464I	CTTAAG	1 cut(s)	755
XagI	CCTNNNNNAGG	1 cut(s)	741
ZrmI	AGTACT	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.