Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0003676

Physical Location & Seq

Genomic Coordinates Reverse (-)

67952026 .. 67957179

Gene Structure 5154 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00217480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGAGGAGTATCTGCAGTACATGAAGACATTGCGCTCTCAAATGAACGATGTGGAGGATCAAGCAGCGAAGGTCTCAGTGGAGGAGCAAATGCAATTAACCACCATCCAGGCCTTAGACAACGATCTCAATTCTGCAATATCTGAAACAAAACGATTCATGGAGGACATTGAGCAGATGAAGAATGCTAAGGGTCAAGTATGCTCACAGATCCTGGAAAGACAGAGAAAGATACTTTGTTGGGAGTCAGATTCATCCACCCTTATCCAGACTCTGGAGCTTATTGAGCAAGAAAGGATCAACTTGGCTGCCAAGCTTATTCAGAAGAGCACTTACTACTTGAAAGTGTCAGGTGATATCAATGCCAAATTGCAGCAACAACAGGATTGGATTAGTGGTCACCAGACTACTACAGAACTTGGAGAACCCGGAATGGTTAAGGATACAATTGATGAGCAAAGAGTTGATATTCAAGGCAAGACTAGCATTGGTGACCACCTCTACATGGATGATCAGGACAATGATGCAAGAAAGAACCTAATGGCGATGGTTGACTCTGCTAAAGTCAAGCTTGATGAGATTCTACGAATGAAATCTGAACTTATCGGAGAGAATTACAAGACGAAGCAGGCTATTGAGCAATTACATTGCAGGGAAAATGATTTTAAGCCAGAGCTAAGGGCATTGGACATAAAGACCCTGGAGGACGAATACAGTGCCCTTTTATCAGATAAAGCTGGAGAAACTGAATACTTGAAGTCTCTGCAGGACCAAATTGATAAAATAAAGGGTATATCTCATGTGCTTAAATGTGCTTGCGGAGAGGAATACAAAGTGGAACTGGACTCTTGTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

285

Amino Acids

32.71

Weight (kDa)

4.74

Isoelectric Point (pI)

45.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003676)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33500 AT1G33500 AT1G33500
fragaria_vesca	FvH4_2g00330 FvH4_2g00330 FvH4_2g00330 FvH4_2g00330 FvH4_2g00330 FvH4_2g00330 FvH4_2g00330 FvH4_2g00330 FvH4_2g00330 FvH4_2g00330 FvH4_2g00330 FvH4_2g04930
malus_domestica	MD05G1006300.v1.1
prunus_persica	Prupe.8G003600_v2.0.a1 Prupe.8G003600_v2.0.a1 Prupe.8G003600_v2.0.a1 Prupe.8G003600_v2.0.a1 Prupe.8G003600_v2.0.a1 Prupe.8G003600_v2.0.a1
pyrus_communis	pycom05g00150 pycom10g00200
rosa_chinensis	RchiOBHm_Chr6g0249621
rosa_laevigata	RLG00000015557
rosa_multiflora	Rmu_sc0006936.1_g000015
rosa_roxburghii	Rroxscaffold_7G00217480
rosa_rugosa	Rorug05G0494200 Rorug05G0494200
rosa_samantha	Rh6AG004000 Rh6BG006200 Rh6CG003000 Rh6DG002800
rosa_wichuraiana	Rw6G000440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	274
AciI	CCGC	1 cut(s)	819
AclWI	GGATC	3 cut(s)	66, 205, 305
AfaI	GTAC	1 cut(s)	20
AfiI	CCNNNNNNNGG	2 cut(s)	274, 505
AgsI	TTSAA	3 cut(s)	343, 473, 757
AjnI	CCWGG	3 cut(s)	108, 213, 699
AluBI	AGCT	5 cut(s)	280, 316, 571, 676, 737
AluI	AGCT	5 cut(s)	280, 316, 571, 676, 737
Alw21I	GWGCWC	1 cut(s)	332
Alw26I	GTCTC	2 cut(s)	79, 765
AlwI	GGATC	3 cut(s)	66, 205, 305
AlwNI	CAGNNNCTG	2 cut(s)	214, 274
AoxI	GGCC	1 cut(s)	111
ApeKI	GCWGC	3 cut(s)	65, 308, 373
AspLEI	GCGC	1 cut(s)	36
AspS9I	GGNCC	1 cut(s)	769
AsuC2I	CCSGG	1 cut(s)	429
AsuHPI	GGTGA	3 cut(s)	365, 392, 503
AvaII	GGWCC	1 cut(s)	769
BaeGI	GKGCMC	1 cut(s)	721
BarI	GAAGNNNNNNTAC	2 cut(s)	317, 349
BbsI	GAAGAC	1 cut(s)	32
Bbv12I	GWGCWC	1 cut(s)	332
BbvI	GCAGC	3 cut(s)	77, 295, 385
BccI	CCATC	2 cut(s)	113, 541
BcgI	CGANNNNNNTGC	2 cut(s)	698, 732
BciT130I	CCWGG	3 cut(s)	110, 215, 701
BciVI	GTATCC	1 cut(s)	436
BclI	TGATCA	1 cut(s)	511
BcnI	CCSGG	1 cut(s)	429
BcoDI	GTCTC	2 cut(s)	79, 765
BfaI	CTAG	1 cut(s)	483
BfmI	CTRYAG	3 cut(s)	14, 411, 764
BfuI	GTATCC	1 cut(s)	436
BisI	GCNGC	3 cut(s)	66, 309, 374
BlsI	GCNGC	3 cut(s)	67, 310, 375
Bme1390I	CCNGG	4 cut(s)	110, 215, 429, 701
Bme18I	GGWCC	1 cut(s)	769
BmgT120I	GGNCC	1 cut(s)	769
BmrFI	CCNGG	4 cut(s)	110, 215, 429, 701
BmsI	GCATC	1 cut(s)	514
BpiI	GAAGAC	1 cut(s)	32
BpmI	CTGGAG	3 cut(s)	296, 722, 759
Bpu10I	CCTNAGC	2 cut(s)	189, 677
BpuMI	CCSGG	1 cut(s)	429
BsaI	GGTCTC	1 cut(s)	79
BsaJI	CCNNGG	1 cut(s)	699
Bsc4I	CCNNNNNNNGG	2 cut(s)	274, 505
Bse1I	ACTGG	1 cut(s)	846
Bse3DI	GCAATG	2 cut(s)	29, 646
BseBI	CCWGG	3 cut(s)	110, 215, 701
BseDI	CCNNGG	1 cut(s)	699
BseGI	GGATG	3 cut(s)	105, 254, 514
BseLI	CCNNNNNNNGG	2 cut(s)	274, 505
BseMI	GCAATG	2 cut(s)	29, 646
BseMII	CTCAG	1 cut(s)	90
BseNI	ACTGG	1 cut(s)	846
BseRI	GAGGAG	2 cut(s)	20, 98
BseSI	GKGCMC	1 cut(s)	721
BseXI	GCAGC	3 cut(s)	77, 295, 385
BshFI	GGCC	1 cut(s)	113
BsiHKAI	GWGCWC	1 cut(s)	332
BsiSI	CCGG	1 cut(s)	429
BslI	CCNNNNNNNGG	2 cut(s)	274, 505
BsmAI	GTCTC	2 cut(s)	79, 765
BsmI	GAATGC	1 cut(s)	190
BsnI	GGCC	1 cut(s)	113
Bso31I	GGTCTC	1 cut(s)	79
Bsp1286I	GDGCHC	2 cut(s)	332, 721
Bsp143I	GATC	5 cut(s)	58, 124, 210, 297, 511
BspACI	CCGC	1 cut(s)	819
BspANI	GGCC	1 cut(s)	113
BspCNI	CTCAG	1 cut(s)	89
BspMAI	CTGCAG	2 cut(s)	18, 768
BspPI	GGATC	3 cut(s)	66, 205, 305
BspQI	GCTCTTC	1 cut(s)	320
BspTNI	GGTCTC	1 cut(s)	79
BsrDI	GCAATG	2 cut(s)	29, 646
BsrI	ACTGG	1 cut(s)	846
BssECI	CCNNGG	1 cut(s)	699
BssMI	GATC	5 cut(s)	58, 124, 210, 297, 511
Bst2UI	CCWGG	3 cut(s)	110, 215, 701
Bst4CI	ACNGT	1 cut(s)	716
Bst6I	CTCTTC	1 cut(s)	320
BstC8I	GCNNGC	2 cut(s)	630, 817
BstDEI	CTNAG	4 cut(s)	76, 115, 189, 677
BstEII	GGTNACC	2 cut(s)	398, 491
BstF5I	GGATG	3 cut(s)	105, 254, 514
BstHHI	GCGC	1 cut(s)	36
BstKTI	GATC	5 cut(s)	61, 127, 213, 300, 514
BstMAI	GTCTC	2 cut(s)	79, 765
BstMBI	GATC	5 cut(s)	58, 124, 210, 297, 511
BstMWI	GCNNNNNNNGC	2 cut(s)	286, 483
BstNI	CCWGG	3 cut(s)	110, 215, 701
BstPI	GGTNACC	2 cut(s)	398, 491
BstSCI	CCNGG	4 cut(s)	108, 213, 427, 699
BstSFI	CTRYAG	3 cut(s)	14, 411, 764
BstSLI	GKGCMC	1 cut(s)	721
BstV1I	GCAGC	3 cut(s)	77, 295, 385
BstV2I	GAAGAC	1 cut(s)	32
BstX2I	RGATCY	1 cut(s)	210
BstYI	RGATCY	1 cut(s)	210
BsuI	GTATCC	1 cut(s)	436
BsuRI	GGCC	1 cut(s)	113
BtgZI	GCGATG	1 cut(s)	560
BtsCI	GGATG	3 cut(s)	105, 254, 514
BtsIMutI	CAGTG	2 cut(s)	84, 721
Cac8I	GCNNGC	2 cut(s)	630, 817
CaiI	CAGNNNCTG	2 cut(s)	214, 274
CfoI	GCGC	1 cut(s)	36
Cfr13I	GGNCC	1 cut(s)	769
Csp6I	GTAC	1 cut(s)	19
CviAII	CATG	4 cut(s)	22, 160, 505, 800
CviJI	RGCY	9 cut(s)	113, 280, 308, 316, 571, 632, 670, 676, 737
CviKI_1	RGCY	9 cut(s)	113, 280, 308, 316, 571, 632, 670, 676, 737
CviQI	GTAC	1 cut(s)	19
DdeI	CTNAG	4 cut(s)	76, 115, 189, 677
DpnI	GATC	5 cut(s)	60, 126, 212, 299, 513
DpnII	GATC	5 cut(s)	58, 124, 210, 297, 511
Eam1104I	CTCTTC	1 cut(s)	320
EarI	CTCTTC	1 cut(s)	320
Eco147I	AGGCCT	1 cut(s)	113
Eco31I	GGTCTC	1 cut(s)	79
Eco32I	GATATC	1 cut(s)	358
Eco47I	GGWCC	1 cut(s)	769
Eco91I	GGTNACC	2 cut(s)	398, 491
EcoO65I	GGTNACC	2 cut(s)	398, 491
EcoRII	CCWGG	3 cut(s)	108, 213, 699
EcoRV	GATATC	1 cut(s)	358
FaeI	CATG	4 cut(s)	25, 163, 508, 803
FaiI	YATR	8 cut(s)	23, 161, 202, 506, 692, 794, 801, 856
FalI	AAGNNNNNCTT	2 cut(s)	555, 587
FatI	CATG	4 cut(s)	21, 159, 504, 799
FbaI	TGATCA	1 cut(s)	511
Fnu4HI	GCNGC	3 cut(s)	66, 309, 374
FokI	GGATG	3 cut(s)	92, 241, 521
Fsp4HI	GCNGC	3 cut(s)	66, 309, 374
FspBI	CTAG	1 cut(s)	483
GlaI	GCGC	1 cut(s)	35
GluI	GCNGC	3 cut(s)	66, 309, 374
GsuI	CTGGAG	3 cut(s)	296, 722, 759
HaeIII	GGCC	1 cut(s)	113
HapII	CCGG	1 cut(s)	429
HhaI	GCGC	1 cut(s)	36
Hin1II	CATG	4 cut(s)	25, 163, 508, 803
Hin6I	GCGC	1 cut(s)	34
HinP1I	GCGC	1 cut(s)	34
HincII	GTYRAC	1 cut(s)	553
HindII	GTYRAC	1 cut(s)	553
HindIII	AAGCTT	2 cut(s)	314, 569
HinfI	GANTC	7 cut(s)	156, 245, 251, 271, 554, 580, 845
HpaII	CCGG	1 cut(s)	429
HphI	GGTGA	3 cut(s)	365, 392, 503
Hpy166II	GTNNAC	1 cut(s)	553
Hpy188I	TCNGA	6 cut(s)	145, 250, 324, 598, 608, 730
Hpy188III	TCNNGA	3 cut(s)	268, 275, 515
Hpy8I	GTNNAC	1 cut(s)	553
HpyAV	CCTTC	1 cut(s)	64
HpyCH4III	ACNGT	1 cut(s)	716
HpyCH4V	TGCA	7 cut(s)	16, 94, 137, 373, 527, 651, 766
HpyF10VI	GCNNNNNNNGC	2 cut(s)	286, 483
HpyF3I	CTNAG	4 cut(s)	76, 115, 189, 677
Hsp92II	CATG	4 cut(s)	25, 163, 508, 803
HspAI	GCGC	1 cut(s)	34
Ksp22I	TGATCA	1 cut(s)	511
Kzo9I	GATC	5 cut(s)	58, 124, 210, 297, 511
LguI	GCTCTTC	1 cut(s)	320
LmnI	GCTCC	2 cut(s)	85, 277
Lsp1109I	GCAGC	3 cut(s)	77, 295, 385
LweI	GCATC	1 cut(s)	514
MaeI	CTAG	1 cut(s)	483
MaeIII	GTNAC	2 cut(s)	398, 491
MalI	GATC	5 cut(s)	60, 126, 212, 299, 513
MboI	GATC	5 cut(s)	58, 124, 210, 297, 511
MboII	GAAGA	3 cut(s)	37, 193, 337
MfeI	CAATTG	1 cut(s)	447
MflI	RGATCY	1 cut(s)	210
MhlI	GDGCHC	2 cut(s)	332, 721
MluCI	AATT	7 cut(s)	95, 130, 368, 447, 613, 641, 774
MlyI	GAGTC	4 cut(s)	254, 265, 548, 839
MnlI	CCTC	6 cut(s)	49, 76, 157, 509, 697, 817
MseI	TTAA	4 cut(s)	98, 438, 666, 807
MspI	CCGG	1 cut(s)	429
MspR9I	CCNGG	4 cut(s)	110, 215, 429, 701
MunI	CAATTG	1 cut(s)	447
Mva1269I	GAATGC	1 cut(s)	190
MvaI	CCWGG	3 cut(s)	110, 215, 701
MwoI	GCNNNNNNNGC	2 cut(s)	286, 483
NciI	CCSGG	1 cut(s)	429
NdeII	GATC	5 cut(s)	58, 124, 210, 297, 511
NlaIII	CATG	4 cut(s)	25, 163, 508, 803
NmuCI	GTSAC	2 cut(s)	398, 491
PceI	AGGCCT	1 cut(s)	113
PciSI	GCTCTTC	1 cut(s)	320
PctI	GAATGC	1 cut(s)	190
PfeI	GAWTC	3 cut(s)	156, 251, 580
PflMI	CCANNNNNTGG	1 cut(s)	274
PfoI	TCCNGGA	1 cut(s)	213
PkrI	GCNGC	3 cut(s)	67, 310, 375
PleI	GAGTC	4 cut(s)	253, 265, 548, 839
PpsI	GAGTC	4 cut(s)	253, 265, 548, 839
Psp6I	CCWGG	3 cut(s)	108, 213, 699
PspEI	GGTNACC	2 cut(s)	398, 491
PspGI	CCWGG	3 cut(s)	108, 213, 699
PspPI	GGNCC	1 cut(s)	769
PstI	CTGCAG	2 cut(s)	18, 768
PstNI	CAGNNNCTG	2 cut(s)	214, 274
PsuI	RGATCY	1 cut(s)	210
RsaI	GTAC	1 cut(s)	20
RsaNI	GTAC	1 cut(s)	19
SapI	GCTCTTC	1 cut(s)	320
SaqAI	TTAA	4 cut(s)	98, 438, 666, 807
SatI	GCNGC	3 cut(s)	66, 309, 374
Sau3AI	GATC	5 cut(s)	58, 124, 210, 297, 511
Sau96I	GGNCC	1 cut(s)	769
SchI	GAGTC	4 cut(s)	254, 265, 548, 839
ScrFI	CCNGG	4 cut(s)	110, 215, 429, 701
SduI	GDGCHC	2 cut(s)	332, 721
SetI	ASST	9 cut(s)	75, 282, 318, 355, 501, 540, 573, 678, 739
SfaNI	GCATC	1 cut(s)	514
SfcI	CTRYAG	3 cut(s)	14, 411, 764
SinI	GGWCC	1 cut(s)	769
Sse9I	AATT	7 cut(s)	95, 130, 368, 447, 613, 641, 774
SseBI	AGGCCT	1 cut(s)	113
SsiI	CCGC	1 cut(s)	819
SspMI	CTAG	1 cut(s)	483
StuI	AGGCCT	1 cut(s)	113
StyD4I	CCNGG	4 cut(s)	108, 213, 427, 699
TaaI	ACNGT	1 cut(s)	716
TasI	AATT	7 cut(s)	95, 130, 368, 447, 613, 641, 774
TatI	WGTACW	1 cut(s)	18
TfiI	GAWTC	3 cut(s)	156, 251, 580
Tru1I	TTAA	4 cut(s)	98, 438, 666, 807
Tru9I	TTAA	4 cut(s)	98, 438, 666, 807
TscAI	CASTG	2 cut(s)	84, 721
TseFI	GTSAC	2 cut(s)	398, 491
TseI	GCWGC	3 cut(s)	65, 308, 373
Tsp45I	GTSAC	2 cut(s)	398, 491
TspDTI	ATGAA	6 cut(s)	38, 59, 148, 194, 243, 605
TspRI	CASTG	2 cut(s)	84, 721
Van91I	CCANNNNNTGG	1 cut(s)	274
VpaK11BI	GGWCC	1 cut(s)	769
XspI	CTAG	1 cut(s)	483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.