Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004308

Physical Location & Seq

Genomic Coordinates Forward (+)

13039660 .. 13042159

Gene Structure 2500 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G35460.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGCAATCCACTCATATAAGCGGCGGAAGTAGCGGTGGTGGTGGTGGAGGAGGAGGAGAGGTGAGTCGAAGTGGATTATCTCGGATCCGTTCAGCTCCAGCTACTTGGATTGAAACCCTACTCGAAGAAGATGAAGAAGAAGGTTTAAAACCTAACCTTTGTTTAACAGAGCTGCTTACTGGTAATAATAACTCTGGAGGAGTGATAACGAGTCGTGACGACTCGTTCGAGTTCCTGAGTTCTGTTGAGCAAGGATTGTATAATCATCATCAAGGTGGTGGCTTTCACCGTCAGAATAGTTCTCCGGCTGATTTTCTTAGTGGGTCTGGTTCTGGGACTGATGGGTATTTCTCTAATTTTGGTATTCCGGCGAATTATGACTATTTGTCGACCAACGTTGATATTTCTCCGACTAAACGGTCTAGAGATATGGAAACACAGTTTTCTTCTCAGCTGAAAGAAGAGCAAATGAGTGGTGGGATATCAGGAATGATGGATATGAACATGGACAAGATTTTTGAGGATTCAGTTCCTTGTAGGGTTCGTGCTAAACGTGGTTGTGCTACTCATCCTCGTAGCATTGCTGAACGGGTGAGAAGAACGCGAATAAGTGATCGGATTAGGAGGCTGCAAGAGCTTGTTCCTAACATGGATAAGCAAACCAACACTGCAGACATGTTGGAAGAAGCTGTGGAGTATGTGAAGGCTCTTCAAAGCCAGATCCAGGAATTGACAGAGCAGCAGAAGAGATGCAAATGCAAACCTAAAGAAGAACAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0042335 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

259

Amino Acids

28.53

Weight (kDa)

5.38

Isoelectric Point (pI)

66.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35460 AT1G35460 AT4G09180
fragaria_vesca	FvH4_5g31910 FvH4_5g31910 FvH4_5g31910
malus_domestica	MD08G1218800.v1.1 MD15G1407200.v1.1
prunus_persica	Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1
pyrus_communis	pycom08g18940 pycom15g36340
rosa_chinensis	RchiOBHm_Chr7g0227911
rosa_laevigata	RLG00000001604
rosa_multiflora	Rmu_co8004144.1_g000001 Rmu_sc0007737.1_g000003
rosa_roxburghii	Rroxscaffold_3G00231770
rosa_rugosa	Rorug07G0244500.1
rosa_samantha	Rh1CG340400 Rh1DG357700 Rh7AG397700 Rh7BG379200 Rh7CG415900 Rh7DG393200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	418
AccI	GTMKAC	1 cut(s)	389
AccII	CGCG	1 cut(s)	604
AciI	CCGC	3 cut(s)	21, 24, 33
AclI	AACGTT	1 cut(s)	396
AclWI	GGATC	3 cut(s)	79, 92, 715
AfiI	CCNNNNNNNGG	1 cut(s)	724
AflIII	ACRYGT	1 cut(s)	675
AgsI	TTSAA	2 cut(s)	113, 713
AhdI	GACNNNNNGTC	1 cut(s)	385
AjnI	CCWGG	1 cut(s)	723
AluBI	AGCT	6 cut(s)	95, 101, 172, 454, 637, 689
AluI	AGCT	6 cut(s)	95, 101, 172, 454, 637, 689
AlwI	GGATC	3 cut(s)	79, 92, 715
ApeKI	GCWGC	3 cut(s)	172, 628, 739
ArsI	GACNNNNNNTTYG	4 cut(s)	209, 241, 500, 532
AsuHPI	GGTGA	3 cut(s)	73, 278, 604
BamHI	GGATCC	1 cut(s)	84
BbvI	GCAGC	3 cut(s)	159, 615, 751
BccI	CCATC	2 cut(s)	335, 487
BciT130I	CCWGG	1 cut(s)	725
BfaI	CTAG	1 cut(s)	423
BfmI	CTRYAG	1 cut(s)	669
BisI	GCNGC	4 cut(s)	22, 173, 629, 740
BlsI	GCNGC	4 cut(s)	23, 174, 630, 741
Bme1390I	CCNGG	1 cut(s)	725
BmeRI	GACNNNNNGTC	1 cut(s)	385
BmiI	GGNNCC	1 cut(s)	86
BmrFI	CCNGG	1 cut(s)	725
BmsI	GCATC	1 cut(s)	740
BpmI	CTGGAG	2 cut(s)	81, 216
BsaXI	ACNNNNNCTCC	2 cut(s)	45, 75
Bsc4I	CCNNNNNNNGG	1 cut(s)	724
Bse1I	ACTGG	1 cut(s)	184
Bse3DI	GCAATG	1 cut(s)	579
BseBI	CCWGG	1 cut(s)	725
BseGI	GGATG	1 cut(s)	568
BseLI	CCNNNNNNNGG	1 cut(s)	724
BseMI	GCAATG	1 cut(s)	579
BseMII	CTCAG	2 cut(s)	227, 464
BseNI	ACTGG	1 cut(s)	184
BseRI	GAGGAG	4 cut(s)	63, 66, 69, 213
BseXI	GCAGC	3 cut(s)	159, 615, 751
Bsh1236I	CGCG	1 cut(s)	604
BsiSI	CCGG	2 cut(s)	305, 368
BslFI	GGGAC	1 cut(s)	349
BslI	CCNNNNNNNGG	1 cut(s)	724
BsmFI	GGGAC	1 cut(s)	349
Bsp143I	GATC	3 cut(s)	84, 613, 720
BspACI	CCGC	3 cut(s)	21, 24, 33
BspCNI	CTCAG	2 cut(s)	228, 463
BspFNI	CGCG	1 cut(s)	604
BspLI	GGNNCC	1 cut(s)	86
BspMAI	CTGCAG	1 cut(s)	673
BspPI	GGATC	3 cut(s)	79, 92, 715
BspQI	GCTCTTC	2 cut(s)	456, 714
BsrDI	GCAATG	1 cut(s)	579
BsrI	ACTGG	1 cut(s)	184
BssMI	GATC	3 cut(s)	84, 613, 720
Bst2UI	CCWGG	1 cut(s)	725
Bst4CI	ACNGT	3 cut(s)	290, 420, 441
Bst6I	CTCTTC	3 cut(s)	456, 714, 740
BstDEI	CTNAG	3 cut(s)	236, 317, 450
BstF5I	GGATG	1 cut(s)	568
BstFNI	CGCG	1 cut(s)	604
BstKTI	GATC	3 cut(s)	87, 616, 723
BstMBI	GATC	3 cut(s)	84, 613, 720
BstMWI	GCNNNNNNNGC	2 cut(s)	30, 634
BstNI	CCWGG	1 cut(s)	725
BstNSI	RCATGY	1 cut(s)	679
BstSCI	CCNGG	1 cut(s)	723
BstSFI	CTRYAG	1 cut(s)	669
BstUI	CGCG	1 cut(s)	604
BstV1I	GCAGC	3 cut(s)	159, 615, 751
BstX2I	RGATCY	2 cut(s)	84, 720
BstXI	CCANNNNNNTGG	1 cut(s)	105
BstYI	RGATCY	2 cut(s)	84, 720
BtsCI	GGATG	1 cut(s)	568
BtsI	GCAGTG	1 cut(s)	666
BtsIMutI	CAGTG	1 cut(s)	666
CviAII	CATG	3 cut(s)	505, 649, 676
DdeI	CTNAG	3 cut(s)	236, 317, 450
DpnI	GATC	3 cut(s)	86, 615, 722
DpnII	GATC	3 cut(s)	84, 613, 720
DraI	TTTAAA	1 cut(s)	147
DrdI	GACNNNNNNGTC	1 cut(s)	418
DriI	GACNNNNNGTC	1 cut(s)	385
DseDI	GACNNNNNNGTC	1 cut(s)	418
Eam1104I	CTCTTC	3 cut(s)	456, 714, 740
Eam1105I	GACNNNNNGTC	1 cut(s)	385
EarI	CTCTTC	3 cut(s)	456, 714, 740
EciI	GGCGGA	1 cut(s)	39
Eco32I	GATATC	1 cut(s)	483
EcoRII	CCWGG	1 cut(s)	723
EcoRV	GATATC	1 cut(s)	483
FaeI	CATG	3 cut(s)	508, 652, 679
FaqI	GGGAC	1 cut(s)	349
FatI	CATG	3 cut(s)	504, 648, 675
FblI	GTMKAC	1 cut(s)	389
Fnu4HI	GCNGC	4 cut(s)	22, 173, 629, 740
FokI	GGATG	1 cut(s)	555
Fsp4HI	GCNGC	4 cut(s)	22, 173, 629, 740
FspBI	CTAG	1 cut(s)	423
GluI	GCNGC	4 cut(s)	22, 173, 629, 740
GsuI	CTGGAG	2 cut(s)	81, 216
HapII	CCGG	2 cut(s)	305, 368
Hin1II	CATG	3 cut(s)	508, 652, 679
HincII	GTYRAC	1 cut(s)	390
HindII	GTYRAC	1 cut(s)	390
HinfI	GANTC	4 cut(s)	64, 211, 221, 524
HpaII	CCGG	2 cut(s)	305, 368
HphI	GGTGA	3 cut(s)	73, 278, 604
Hpy166II	GTNNAC	1 cut(s)	390
Hpy188I	TCNGA	4 cut(s)	84, 294, 411, 618
Hpy188III	TCNNGA	5 cut(s)	195, 215, 235, 423, 486
Hpy8I	GTNNAC	1 cut(s)	390
HpyAV	CCTTC	2 cut(s)	134, 697
HpyCH4III	ACNGT	3 cut(s)	290, 420, 441
HpyCH4IV	ACGT	2 cut(s)	396, 553
HpyCH4V	TGCA	5 cut(s)	4, 631, 671, 753, 759
HpyF10VI	GCNNNNNNNGC	2 cut(s)	30, 634
HpyF3I	CTNAG	3 cut(s)	236, 317, 450
HpySE526I	ACGT	2 cut(s)	396, 553
Hsp92II	CATG	3 cut(s)	508, 652, 679
Kzo9I	GATC	3 cut(s)	84, 613, 720
LguI	GCTCTTC	2 cut(s)	456, 714
LmnI	GCTCC	1 cut(s)	100
Lsp1109I	GCAGC	3 cut(s)	159, 615, 751
LweI	GCATC	1 cut(s)	740
MaeI	CTAG	1 cut(s)	423
MaeII	ACGT	2 cut(s)	396, 553
MaeIII	GTNAC	1 cut(s)	215
MalI	GATC	3 cut(s)	86, 615, 722
MboI	GATC	3 cut(s)	84, 613, 720
MflI	RGATCY	2 cut(s)	84, 720
MluCI	AATT	3 cut(s)	355, 373, 728
MlyI	GAGTC	3 cut(s)	73, 215, 220
MmeI	TCCRAC	2 cut(s)	434, 660
MnlI	CCTC	8 cut(s)	41, 44, 47, 52, 191, 514, 582, 618
MseI	TTAA	2 cut(s)	146, 164
MslI	CAYNNNNRTG	1 cut(s)	273
MspA1I	CMGCKG	1 cut(s)	454
MspI	CCGG	2 cut(s)	305, 368
MspR9I	CCNGG	1 cut(s)	725
MvaI	CCWGG	1 cut(s)	725
MvnI	CGCG	1 cut(s)	604
MwoI	GCNNNNNNNGC	2 cut(s)	30, 634
NdeII	GATC	3 cut(s)	84, 613, 720
NlaIII	CATG	3 cut(s)	508, 652, 679
NlaIV	GGNNCC	1 cut(s)	86
NmuCI	GTSAC	1 cut(s)	215
NspI	RCATGY	1 cut(s)	679
PciI	ACATGT	1 cut(s)	675
PciSI	GCTCTTC	2 cut(s)	456, 714
PcsI	WCGNNNNNNNCGW	2 cut(s)	225, 550
PfeI	GAWTC	1 cut(s)	524
PfoI	TCCNGGA	1 cut(s)	723
PkrI	GCNGC	4 cut(s)	23, 174, 630, 741
PleI	GAGTC	3 cut(s)	72, 215, 219
PpsI	GAGTC	3 cut(s)	72, 215, 219
PscI	ACATGT	1 cut(s)	675
Psp1406I	AACGTT	1 cut(s)	396
Psp6I	CCWGG	1 cut(s)	723
PspGI	CCWGG	1 cut(s)	723
PspN4I	GGNNCC	1 cut(s)	86
PstI	CTGCAG	1 cut(s)	673
PsuI	RGATCY	2 cut(s)	84, 720
PvuII	CAGCTG	1 cut(s)	454
RseI	CAYNNNNRTG	1 cut(s)	273
SalI	GTCGAC	1 cut(s)	388
SapI	GCTCTTC	2 cut(s)	456, 714
SaqAI	TTAA	2 cut(s)	146, 164
SatI	GCNGC	4 cut(s)	22, 173, 629, 740
Sau3AI	GATC	3 cut(s)	84, 613, 720
SchI	GAGTC	3 cut(s)	73, 215, 220
ScrFI	CCNGG	1 cut(s)	725
SfaNI	GCATC	1 cut(s)	740
SfcI	CTRYAG	1 cut(s)	669
SmiMI	CAYNNNNRTG	1 cut(s)	273
Sse9I	AATT	3 cut(s)	355, 373, 728
SsiI	CCGC	3 cut(s)	21, 24, 33
SspMI	CTAG	1 cut(s)	423
StyD4I	CCNGG	1 cut(s)	723
TaaI	ACNGT	3 cut(s)	290, 420, 441
TaiI	ACGT	2 cut(s)	399, 556
TaqI	TCGA	4 cut(s)	67, 123, 228, 389
TasI	AATT	3 cut(s)	355, 373, 728
TauI	GCSGC	1 cut(s)	24
TfiI	GAWTC	1 cut(s)	524
Tru1I	TTAA	2 cut(s)	146, 164
Tru9I	TTAA	2 cut(s)	146, 164
TscAI	CASTG	1 cut(s)	673
TseFI	GTSAC	1 cut(s)	215
TseI	GCWGC	3 cut(s)	172, 628, 739
Tsp45I	GTSAC	1 cut(s)	215
TspDTI	ATGAA	2 cut(s)	147, 515
TspGWI	ACGGA	1 cut(s)	77
TspRI	CASTG	1 cut(s)	673
XbaI	TCTAGA	1 cut(s)	422
XceI	RCATGY	1 cut(s)	679
XmiI	GTMKAC	1 cut(s)	389
XspI	CTAG	1 cut(s)	423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.