Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0004308

Physical Location & Seq

Genomic Coordinates Forward (+)

58168952 .. 58185569

Gene Structure 16618 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG357700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGCTACATGGTTGGCTAGCTCCTTCTCTCTTCTACACTTGAAGCAAAAATGTCCCTATAAATCAACGAGGAAAACTCGCAGCTGGCCGGCGAGGACAAGGCAGATGCAACCGGCACCTGGCAGAAGTAGAGGAGAAGTGACTCGCGAAGGACTTGGCCGGTTATGCTCGACCCCTGCGTCATGTTTGGAAGCGCTGCTTGAGGACGAAGAAGAGGACCATTTGATGCCGACCCAGTGCCTCACTGACCTTCTTGCCGATAACTGCGAGGGGCCTAGTTCGATGGTGACGACAGCAGTGGGGTTTGCTTCGAATACGACGACAGATCCAGCTGCTGCATTTCTCAGACAGAACAGCTCTTCGGCCAACTTTGTCGAGAATTTGAGTGATGGGTCCGAATGTGAAACGGCTAAGAGTACGGAACAATATTCATATGAGGAAGTCAATGAAGACGAAAGAGAATCAGAGAGATACTACACAAAGTCTACTACTTCACCCCAATATAATAATATTGATGAGTTGAATACAACTCAACGAGTCAACTCGATCATAAACTCCATTACAACACCACCACCACCAGCAAAAGGTCCATCGCCGTCAGTCACCACCGTGTGCTGGCCTCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0042335 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

208

Amino Acids

22.98

Weight (kDa)

4.98

Isoelectric Point (pI)

55.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35460 AT1G35460 AT4G09180
fragaria_vesca	FvH4_5g31910 FvH4_5g31910 FvH4_5g31910
malus_domestica	MD08G1218800.v1.1 MD15G1407200.v1.1
prunus_persica	Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1
pyrus_communis	pycom08g18940 pycom15g36340
rosa_chinensis	RchiOBHm_Chr7g0227911
rosa_laevigata	RLG00000001604
rosa_multiflora	Rmu_co8004144.1_g000001 Rmu_sc0007737.1_g000003
rosa_roxburghii	Rroxscaffold_3G00231770
rosa_rugosa	Rorug07G0244500.1
rosa_samantha	Rh1CG340400 Rh1DG357700 Rh7AG397700 Rh7BG379200 Rh7CG415900 Rh7DG393200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	178
AccB1I	GGYRCC	1 cut(s)	115
AccI	GTMKAC	1 cut(s)	485
AccII	CGCG	1 cut(s)	147
AclWI	GGATC	1 cut(s)	320
AcoI	YGGCCR	3 cut(s)	86, 157, 363
AcsI	RAATTY	1 cut(s)	379
AdeI	CACNNNGTG	1 cut(s)	612
AfaI	GTAC	1 cut(s)	418
AfeI	AGCGCT	1 cut(s)	195
AfiI	CCNNNNNNNGG	3 cut(s)	119, 584, 615
AgsI	TTSAA	2 cut(s)	43, 523
AjnI	CCWGG	1 cut(s)	118
AleI	CACNNNNGTG	1 cut(s)	608
AluBI	AGCT	4 cut(s)	21, 84, 332, 357
AluI	AGCT	4 cut(s)	21, 84, 332, 357
AlwI	GGATC	1 cut(s)	320
AlwNI	CAGNNNCTG	1 cut(s)	335
Aor51HI	AGCGCT	1 cut(s)	195
AoxI	GGCC	5 cut(s)	86, 157, 272, 363, 617
ApeKI	GCWGC	4 cut(s)	81, 196, 332, 335
ApoI	RAATTY	1 cut(s)	379
AspLEI	GCGC	1 cut(s)	196
AspS9I	GGNCC	4 cut(s)	217, 272, 393, 587
AsuHPI	GGTGA	3 cut(s)	298, 486, 595
AsuII	TTCGAA	1 cut(s)	311
AsuNHI	GCTAGC	1 cut(s)	17
AvaII	GGWCC	3 cut(s)	217, 393, 587
BanI	GGYRCC	1 cut(s)	115
BbsI	GAAGAC	1 cut(s)	456
BbvI	GCAGC	4 cut(s)	93, 183, 319, 322
BccI	CCATC	3 cut(s)	277, 383, 598
BceAI	ACGGC	2 cut(s)	423, 580
BciT130I	CCWGG	1 cut(s)	120
BfaI	CTAG	2 cut(s)	18, 276
BfoI	RGCGCY	1 cut(s)	197
BisI	GCNGC	4 cut(s)	82, 197, 333, 336
BlsI	GCNGC	4 cut(s)	83, 198, 334, 337
Bme1390I	CCNGG	1 cut(s)	120
Bme18I	GGWCC	3 cut(s)	217, 393, 587
BmgT120I	GGNCC	4 cut(s)	217, 272, 393, 587
BmiI	GGNNCC	3 cut(s)	117, 273, 394
BmrFI	CCNGG	1 cut(s)	120
BmrI	ACTGGG	1 cut(s)	229
BmsI	GCATC	2 cut(s)	96, 216
BmtI	GCTAGC	1 cut(s)	21
BmuI	ACTGGG	1 cut(s)	229
BpiI	GAAGAC	1 cut(s)	456
BplI	GAGNNNNNCTC	2 cut(s)	61, 93
Bpu14I	TTCGAA	1 cut(s)	311
BpuEI	CTTGAG	1 cut(s)	221
Bsc4I	CCNNNNNNNGG	3 cut(s)	119, 584, 615
Bse118I	RCCGGY	3 cut(s)	88, 112, 159
Bse1I	ACTGG	1 cut(s)	235
BseBI	CCWGG	1 cut(s)	120
BseLI	CCNNNNNNNGG	3 cut(s)	119, 584, 615
BseMII	CTCAG	1 cut(s)	358
BseNI	ACTGG	1 cut(s)	235
BseRI	GAGGAG	1 cut(s)	147
BseXI	GCAGC	4 cut(s)	93, 183, 319, 322
Bsh1236I	CGCG	1 cut(s)	147
BshFI	GGCC	5 cut(s)	88, 159, 274, 365, 619
BshNI	GGYRCC	1 cut(s)	115
BsiSI	CCGG	3 cut(s)	89, 113, 160
BslFI	GGGAC	1 cut(s)	39
BslI	CCNNNNNNNGG	3 cut(s)	119, 584, 615
BsmFI	GGGAC	1 cut(s)	39
BsnI	GGCC	5 cut(s)	88, 159, 274, 365, 619
Bsp119I	TTCGAA	1 cut(s)	311
Bsp143I	GATC	2 cut(s)	325, 546
Bsp68I	TCGCGA	1 cut(s)	147
BspANI	GGCC	5 cut(s)	88, 159, 274, 365, 619
BspCNI	CTCAG	1 cut(s)	357
BspFNI	CGCG	1 cut(s)	147
BspLI	GGNNCC	3 cut(s)	117, 273, 394
BspOI	GCTAGC	1 cut(s)	21
BspPI	GGATC	1 cut(s)	320
BspQI	GCTCTTC	1 cut(s)	364
BspT104I	TTCGAA	1 cut(s)	311
BspT107I	GGYRCC	1 cut(s)	115
BsrFI	RCCGGY	3 cut(s)	88, 112, 159
BsrI	ACTGG	1 cut(s)	235
BssAI	RCCGGY	3 cut(s)	88, 112, 159
BssMI	GATC	2 cut(s)	325, 546
Bst2UI	CCWGG	1 cut(s)	120
Bst4CI	ACNGT	1 cut(s)	610
Bst6I	CTCTTC	3 cut(s)	36, 207, 364
BstBI	TTCGAA	1 cut(s)	311
BstC8I	GCNNGC	4 cut(s)	19, 86, 90, 617
BstDEI	CTNAG	2 cut(s)	344, 411
BstFNI	CGCG	1 cut(s)	147
BstH2I	RGCGCY	1 cut(s)	197
BstHHI	GCGC	1 cut(s)	196
BstKTI	GATC	2 cut(s)	328, 549
BstMBI	GATC	2 cut(s)	325, 546
BstMWI	GCNNNNNNNGC	1 cut(s)	165
BstNI	CCWGG	1 cut(s)	120
BstSCI	CCNGG	1 cut(s)	118
BstUI	CGCG	1 cut(s)	147
BstV1I	GCAGC	4 cut(s)	93, 183, 319, 322
BstV2I	GAAGAC	1 cut(s)	456
BstX2I	RGATCY	1 cut(s)	325
BstYI	RGATCY	1 cut(s)	325
BsuRI	GGCC	5 cut(s)	88, 159, 274, 365, 619
BtgZI	GCGATG	1 cut(s)	576
BtsI	GCAGTG	1 cut(s)	303
BtsIMutI	CAGTG	3 cut(s)	242, 243, 303
BtuMI	TCGCGA	1 cut(s)	147
Cac8I	GCNNGC	4 cut(s)	19, 86, 90, 617
CaiI	CAGNNNCTG	1 cut(s)	335
CfoI	GCGC	1 cut(s)	196
Cfr10I	RCCGGY	3 cut(s)	88, 112, 159
Cfr13I	GGNCC	4 cut(s)	217, 272, 393, 587
CseI	GACGC	1 cut(s)	168
Csp6I	GTAC	1 cut(s)	417
CviAII	CATG	2 cut(s)	9, 183
CviQI	GTAC	1 cut(s)	417
DdeI	CTNAG	2 cut(s)	344, 411
DpnI	GATC	2 cut(s)	327, 548
DpnII	GATC	2 cut(s)	325, 546
DraIII	CACNNNGTG	1 cut(s)	612
DrdI	GACNNNNNNGTC	1 cut(s)	178
DseDI	GACNNNNNNGTC	1 cut(s)	178
EaeI	YGGCCR	3 cut(s)	86, 157, 363
Eam1104I	CTCTTC	3 cut(s)	36, 207, 364
EarI	CTCTTC	3 cut(s)	36, 207, 364
Eco47I	GGWCC	3 cut(s)	217, 393, 587
Eco47III	AGCGCT	1 cut(s)	195
EcoO109I	RGGNCCY	1 cut(s)	272
EcoRII	CCWGG	1 cut(s)	118
FaeI	CATG	2 cut(s)	12, 186
FaiI	YATR	8 cut(s)	10, 60, 166, 184, 433, 435, 504, 551
FalI	AAGNNNNNCTT	2 cut(s)	183, 215
FaqI	GGGAC	1 cut(s)	39
FatI	CATG	2 cut(s)	8, 182
FauNDI	CATATG	1 cut(s)	433
FblI	GTMKAC	1 cut(s)	485
Fnu4HI	GCNGC	4 cut(s)	82, 197, 333, 336
Fsp4HI	GCNGC	4 cut(s)	82, 197, 333, 336
FspBI	CTAG	2 cut(s)	18, 276
GlaI	GCGC	1 cut(s)	195
GluI	GCNGC	4 cut(s)	82, 197, 333, 336
HaeII	RGCGCY	1 cut(s)	197
HaeIII	GGCC	5 cut(s)	88, 159, 274, 365, 619
HapII	CCGG	3 cut(s)	89, 113, 160
HgaI	GACGC	1 cut(s)	168
HhaI	GCGC	1 cut(s)	196
Hin1II	CATG	2 cut(s)	12, 186
Hin6I	GCGC	1 cut(s)	194
HinP1I	GCGC	1 cut(s)	194
HincII	GTYRAC	1 cut(s)	541
HindII	GTYRAC	1 cut(s)	541
HinfI	GANTC	3 cut(s)	142, 461, 537
HpaII	CCGG	3 cut(s)	89, 113, 160
HphI	GGTGA	3 cut(s)	298, 486, 595
Hpy166II	GTNNAC	2 cut(s)	486, 541
Hpy188I	TCNGA	3 cut(s)	347, 397, 466
Hpy188III	TCNNGA	2 cut(s)	146, 376
Hpy8I	GTNNAC	2 cut(s)	486, 541
Hpy99I	CGWCG	1 cut(s)	322
HpyAV	CCTTC	3 cut(s)	34, 143, 260
HpyCH4III	ACNGT	1 cut(s)	610
HpyCH4V	TGCA	2 cut(s)	109, 338
HpyF10VI	GCNNNNNNNGC	1 cut(s)	165
HpyF3I	CTNAG	2 cut(s)	344, 411
Hsp92II	CATG	2 cut(s)	12, 186
HspAI	GCGC	1 cut(s)	194
KroI	GCCGGC	1 cut(s)	88
KroNI	GCCGGC	1 cut(s)	90
Kzo9I	GATC	2 cut(s)	325, 546
LguI	GCTCTTC	1 cut(s)	364
LmnI	GCTCC	1 cut(s)	26
Lsp1109I	GCAGC	4 cut(s)	93, 183, 319, 322
LweI	GCATC	2 cut(s)	96, 216
MaeI	CTAG	2 cut(s)	18, 276
MaeIII	GTNAC	3 cut(s)	139, 286, 601
MalI	GATC	2 cut(s)	327, 548
MboI	GATC	2 cut(s)	325, 546
MboII	GAAGA	5 cut(s)	23, 221, 224, 351, 461
MflI	RGATCY	1 cut(s)	325
MluCI	AATT	1 cut(s)	379
MlyI	GAGTC	2 cut(s)	136, 546
MnlI	CCTC	8 cut(s)	63, 87, 125, 196, 208, 251, 262, 430
MroNI	GCCGGC	1 cut(s)	88
MseI	TTAA	1 cut(s)	625
MslI	CAYNNNNRTG	1 cut(s)	608
MspA1I	CMGCKG	2 cut(s)	84, 332
MspI	CCGG	3 cut(s)	89, 113, 160
MspR9I	CCNGG	1 cut(s)	120
MvaI	CCWGG	1 cut(s)	120
MvnI	CGCG	1 cut(s)	147
MwoI	GCNNNNNNNGC	1 cut(s)	165
NaeI	GCCGGC	1 cut(s)	90
NdeI	CATATG	1 cut(s)	433
NdeII	GATC	2 cut(s)	325, 546
NgoMIV	GCCGGC	1 cut(s)	88
NheI	GCTAGC	1 cut(s)	17
NlaIII	CATG	2 cut(s)	12, 186
NlaIV	GGNNCC	3 cut(s)	117, 273, 394
NmuCI	GTSAC	3 cut(s)	139, 286, 601
NruI	TCGCGA	1 cut(s)	147
NspV	TTCGAA	1 cut(s)	311
OliI	CACNNNNGTG	1 cut(s)	608
PciSI	GCTCTTC	1 cut(s)	364
PcsI	WCGNNNNNNNCGW	3 cut(s)	176, 287, 317
PdiI	GCCGGC	1 cut(s)	90
PfeI	GAWTC	1 cut(s)	461
PkrI	GCNGC	4 cut(s)	83, 198, 334, 337
PleI	GAGTC	2 cut(s)	136, 545
PpsI	GAGTC	2 cut(s)	136, 545
Psp6I	CCWGG	1 cut(s)	118
PspGI	CCWGG	1 cut(s)	118
PspN4I	GGNNCC	3 cut(s)	117, 273, 394
PspPI	GGNCC	4 cut(s)	217, 272, 393, 587
PstNI	CAGNNNCTG	1 cut(s)	335
PsuI	RGATCY	1 cut(s)	325
PvuII	CAGCTG	2 cut(s)	84, 332
RruI	TCGCGA	1 cut(s)	147
RsaI	GTAC	1 cut(s)	418
RsaNI	GTAC	1 cut(s)	417
RseI	CAYNNNNRTG	1 cut(s)	608
SapI	GCTCTTC	1 cut(s)	364
SaqAI	TTAA	1 cut(s)	625
SatI	GCNGC	4 cut(s)	82, 197, 333, 336
Sau3AI	GATC	2 cut(s)	325, 546
Sau96I	GGNCC	4 cut(s)	217, 272, 393, 587
SchI	GAGTC	2 cut(s)	136, 546
ScrFI	CCNGG	1 cut(s)	120
SetI	ASST	7 cut(s)	23, 86, 121, 252, 334, 359, 589
SfaNI	GCATC	2 cut(s)	96, 216
SfuI	TTCGAA	1 cut(s)	311
SinI	GGWCC	3 cut(s)	217, 393, 587
SmiMI	CAYNNNNRTG	1 cut(s)	608
SmlI	CTYRAG	1 cut(s)	200
SmoI	CTYRAG	1 cut(s)	200
Sse9I	AATT	1 cut(s)	379
SspI	AATATT	2 cut(s)	428, 511
SspMI	CTAG	2 cut(s)	18, 276
StyD4I	CCNGG	1 cut(s)	118
TaaI	ACNGT	1 cut(s)	610
TaqI	TCGA	5 cut(s)	170, 281, 311, 375, 545
TasI	AATT	1 cut(s)	379
TfiI	GAWTC	1 cut(s)	461
Tru1I	TTAA	1 cut(s)	625
Tru9I	TTAA	1 cut(s)	625
TscAI	CASTG	3 cut(s)	242, 250, 303
TseFI	GTSAC	3 cut(s)	139, 286, 601
TseI	GCWGC	4 cut(s)	81, 196, 332, 335
Tsp45I	GTSAC	3 cut(s)	139, 286, 601
TspDTI	ATGAA	2 cut(s)	420, 462
TspGWI	ACGGA	1 cut(s)	434
TspRI	CASTG	3 cut(s)	242, 250, 303
VpaK11BI	GGWCC	3 cut(s)	217, 393, 587
XapI	RAATTY	1 cut(s)	379
XmiI	GTMKAC	1 cut(s)	485
XspI	CTAG	2 cut(s)	18, 276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.