Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0004308

Physical Location & Seq

Genomic Coordinates Forward (+)

50747838 .. 50751819

Gene Structure 3982 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1407200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGCAACGGGCAGCCGGCGGAAGCAGCGGCGGCGAAGTGAGTCGAGGAGGAGGCGGACTCGGGCGGTTCAGCTCCGCCCCAGCCGCATGGTTAGAAGCGCTGCTTGAAGAGGACGAAGAGGACCCACTGAAGCCCACCCAGTGTTTGACTGAGCTTCTTGCTGACAACACACCTTGTACGACGGTGGATCCAGCGTCGTATGAGGCTGCAGATGGGTATCTTAGTCGACAGCATAGCTCACCGGCTGATTTTAGTGGCGGCGGCGGGTCGGGGGGATATTTCTCGGGGTTTGGAATTCCGGCCCACCTCGACCTTGTGTCGTCGTCGTCGTTGTCCCCAAACAGCTCTTCTTCCTCTGCTAATAAGAGGGTTCGGGAGCAGCACCACTTTTCCTCCGACTCACATGTGAAAGTGGAGGAAGGTGGGTTGGAGGATTCGGTGAGTTGCAGGGTGAGGGCCAAGCGTGGTTGTGCGACACATCCCAGGAGCATTGCTGAAAGGGTCCGGAGGACTAGGATCAGTGACCGCATAAGGAAGCTACAAGAGCTGGTGCCCAACATGGATAAGCAAACTAATACTGCGGATATGTTAGATGAGGCAGTGGAGTATGTGAAGTTTCTTCAGAAGCAGATTCAGGAACTTTCGGAGGATCAGCGCAGGTGCAAATGCATAGCTAAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0042335 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

228

Amino Acids

24.53

Weight (kDa)

5.75

Isoelectric Point (pI)

58.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	163 - 208	1.3e-09	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	166 - 211	5.5e-06	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35460 AT1G35460 AT4G09180
fragaria_vesca	FvH4_5g31910 FvH4_5g31910 FvH4_5g31910
malus_domestica	MD08G1218800.v1.1 MD15G1407200.v1.1
prunus_persica	Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1
pyrus_communis	pycom08g18940 pycom15g36340
rosa_chinensis	RchiOBHm_Chr7g0227911
rosa_laevigata	RLG00000001604
rosa_multiflora	Rmu_co8004144.1_g000001 Rmu_sc0007737.1_g000003
rosa_roxburghii	Rroxscaffold_3G00231770
rosa_rugosa	Rorug07G0244500.1
rosa_samantha	Rh1CG340400 Rh1DG357700 Rh7AG397700 Rh7BG379200 Rh7CG415900 Rh7DG393200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	648
Acc36I	ACCTGC	1 cut(s)	648
AccB1I	GGYRCC	1 cut(s)	550
AccI	GTMKAC	1 cut(s)	226
AccIII	TCCGGA	1 cut(s)	504
AclWI	GGATC	4 cut(s)	182, 195, 524, 657
AcsI	RAATTY	1 cut(s)	294
AcuI	CTGAAG	2 cut(s)	149, 605
AdeI	CACNNNGTG	1 cut(s)	141
AfaI	GTAC	1 cut(s)	178
AfeI	AGCGCT	1 cut(s)	99
AflIII	ACRYGT	1 cut(s)	403
AgsI	TTSAA	1 cut(s)	107
AhdI	GACNNNNNGTC	1 cut(s)	316
AjnI	CCWGG	1 cut(s)	482
AjuI	GAANNNNNNNTTGG	2 cut(s)	331, 363
AluBI	AGCT	7 cut(s)	72, 154, 237, 345, 538, 547, 674
AluI	AGCT	7 cut(s)	72, 154, 237, 345, 538, 547, 674
AlwI	GGATC	4 cut(s)	182, 195, 524, 657
Ama87I	CYCGRG	2 cut(s)	59, 283
Aor13HI	TCCGGA	1 cut(s)	504
Aor51HI	AGCGCT	1 cut(s)	99
AoxI	GGCC	2 cut(s)	300, 456
ApeKI	GCWGC	5 cut(s)	11, 24, 100, 206, 379
ApoI	RAATTY	1 cut(s)	294
AspLEI	GCGC	2 cut(s)	100, 657
AspS9I	GGNCC	4 cut(s)	121, 301, 456, 502
AsuHPI	GGTGA	3 cut(s)	231, 451, 463
AvaI	CYCGRG	2 cut(s)	59, 283
AvaII	GGWCC	2 cut(s)	121, 502
BaeGI	GKGCMC	1 cut(s)	555
BamHI	GGATCC	1 cut(s)	187
BanI	GGYRCC	1 cut(s)	550
BbvI	GCAGC	5 cut(s)	23, 36, 87, 193, 391
BccI	CCATC	1 cut(s)	206
BciT130I	CCWGG	1 cut(s)	484
BfaI	CTAG	1 cut(s)	513
BfmI	CTRYAG	1 cut(s)	207
BfoI	RGCGCY	1 cut(s)	101
BfuAI	ACCTGC	1 cut(s)	648
Bme1390I	CCNGG	1 cut(s)	484
Bme18I	GGWCC	2 cut(s)	121, 502
BmeRI	GACNNNNNGTC	1 cut(s)	316
BmeT110I	CYCGRG	2 cut(s)	59, 283
BmgT120I	GGNCC	4 cut(s)	121, 301, 456, 502
BmiI	GGNNCC	4 cut(s)	123, 189, 503, 552
BmrFI	CCNGG	1 cut(s)	484
BmrI	ACTGGG	1 cut(s)	133
BmuI	ACTGGG	1 cut(s)	133
BplI	GAGNNNNNCTC	2 cut(s)	42, 74
BsaBI	GATNNNNATC	1 cut(s)	216
BsaJI	CCNNGG	1 cut(s)	482
BsaWI	WCCGGW	1 cut(s)	504
BsaXI	ACNNNNNCTCC	2 cut(s)	377, 407
Bse118I	RCCGGY	2 cut(s)	14, 241
Bse1I	ACTGG	1 cut(s)	139
Bse3DI	GCAATG	1 cut(s)	489
Bse8I	GATNNNNATC	1 cut(s)	216
BseAI	TCCGGA	1 cut(s)	504
BseBI	CCWGG	1 cut(s)	484
BseDI	CCNNGG	1 cut(s)	482
BseGI	GGATG	1 cut(s)	478
BseJI	GATNNNNATC	1 cut(s)	216
BseMI	GCAATG	1 cut(s)	489
BseMII	CTCAG	1 cut(s)	141
BseNI	ACTGG	1 cut(s)	139
BseRI	GAGGAG	2 cut(s)	60, 63
BseSI	GKGCMC	1 cut(s)	555
BseXI	GCAGC	5 cut(s)	23, 36, 87, 193, 391
BseYI	CCCAGC	1 cut(s)	79
BshFI	GGCC	2 cut(s)	302, 458
BshNI	GGYRCC	1 cut(s)	550
BsiHKCI	CYCGRG	2 cut(s)	59, 283
BsiSI	CCGG	4 cut(s)	15, 242, 299, 505
BslFI	GGGAC	1 cut(s)	319
BsmFI	GGGAC	1 cut(s)	319
BsnI	GGCC	2 cut(s)	302, 458
BsoBI	CYCGRG	2 cut(s)	59, 283
Bsp1286I	GDGCHC	1 cut(s)	555
Bsp13I	TCCGGA	1 cut(s)	504
Bsp143I	GATC	3 cut(s)	187, 516, 649
BspANI	GGCC	2 cut(s)	302, 458
BspCNI	CTCAG	1 cut(s)	142
BspEI	TCCGGA	1 cut(s)	504
BspLI	GGNNCC	4 cut(s)	123, 189, 503, 552
BspMAI	CTGCAG	1 cut(s)	211
BspMI	ACCTGC	1 cut(s)	648
BspPI	GGATC	4 cut(s)	182, 195, 524, 657
BspQI	GCTCTTC	1 cut(s)	352
BspT107I	GGYRCC	1 cut(s)	550
BsrDI	GCAATG	1 cut(s)	489
BsrFI	RCCGGY	2 cut(s)	14, 241
BsrI	ACTGG	1 cut(s)	139
BssAI	RCCGGY	2 cut(s)	14, 241
BssECI	CCNNGG	1 cut(s)	482
BssMI	GATC	3 cut(s)	187, 516, 649
Bst2UI	CCWGG	1 cut(s)	484
Bst4CI	ACNGT	1 cut(s)	184
Bst6I	CTCTTC	3 cut(s)	102, 111, 352
BstC8I	GCNNGC	1 cut(s)	16
BstDEI	CTNAG	2 cut(s)	150, 221
BstF5I	GGATG	1 cut(s)	478
BstH2I	RGCGCY	1 cut(s)	101
BstHHI	GCGC	2 cut(s)	100, 657
BstKTI	GATC	3 cut(s)	190, 519, 652
BstMBI	GATC	3 cut(s)	187, 516, 649
BstMWI	GCNNNNNNNGC	4 cut(s)	24, 30, 83, 544
BstNI	CCWGG	1 cut(s)	484
BstNSI	RCATGY	1 cut(s)	407
BstSCI	CCNGG	1 cut(s)	482
BstSFI	CTRYAG	1 cut(s)	207
BstSLI	GKGCMC	1 cut(s)	555
BstV1I	GCAGC	5 cut(s)	23, 36, 87, 193, 391
BstX2I	RGATCY	1 cut(s)	187
BstXI	CCANNNNNNTGG	1 cut(s)	87
BstYI	RGATCY	1 cut(s)	187
BsuRI	GGCC	2 cut(s)	302, 458
BtsCI	GGATG	1 cut(s)	478
BtsI	GCAGTG	1 cut(s)	606
BtsIMutI	CAGTG	4 cut(s)	125, 146, 526, 606
BveI	ACCTGC	1 cut(s)	648
Cac8I	GCNNGC	1 cut(s)	16
CfoI	GCGC	2 cut(s)	100, 657
Cfr10I	RCCGGY	2 cut(s)	14, 241
Cfr13I	GGNCC	4 cut(s)	121, 301, 456, 502
CseI	GACGC	1 cut(s)	183
Csp6I	GTAC	1 cut(s)	177
CviAII	CATG	3 cut(s)	87, 404, 559
CviQI	GTAC	1 cut(s)	177
DdeI	CTNAG	2 cut(s)	150, 221
DpnI	GATC	3 cut(s)	189, 518, 651
DpnII	GATC	3 cut(s)	187, 516, 649
DraIII	CACNNNGTG	1 cut(s)	141
DriI	GACNNNNNGTC	1 cut(s)	316
Eam1104I	CTCTTC	3 cut(s)	102, 111, 352
Eam1105I	GACNNNNNGTC	1 cut(s)	316
EarI	CTCTTC	3 cut(s)	102, 111, 352
EciI	GGCGGA	3 cut(s)	33, 64, 69
Eco47I	GGWCC	2 cut(s)	121, 502
Eco47III	AGCGCT	1 cut(s)	99
Eco57I	CTGAAG	2 cut(s)	149, 605
Eco88I	CYCGRG	2 cut(s)	59, 283
EcoO109I	RGGNCCY	1 cut(s)	121
EcoRI	GAATTC	1 cut(s)	294
EcoRII	CCWGG	1 cut(s)	482
EcoT22I	ATGCAT	1 cut(s)	671
FaeI	CATG	3 cut(s)	90, 407, 562
FaiI	YATR	9 cut(s)	88, 201, 234, 405, 530, 560, 587, 609, 671
FalI	AAGNNNNNCTT	2 cut(s)	87, 119
FaqI	GGGAC	1 cut(s)	319
FatI	CATG	3 cut(s)	86, 403, 558
FauI	CCCGC	1 cut(s)	257
FblI	GTMKAC	1 cut(s)	226
FokI	GGATG	1 cut(s)	465
FspBI	CTAG	1 cut(s)	513
GlaI	GCGC	2 cut(s)	99, 656
GsaI	CCCAGC	1 cut(s)	83
HaeII	RGCGCY	1 cut(s)	101
HaeIII	GGCC	2 cut(s)	302, 458
HapII	CCGG	4 cut(s)	15, 242, 299, 505
HgaI	GACGC	1 cut(s)	183
HhaI	GCGC	2 cut(s)	100, 657
Hin1II	CATG	3 cut(s)	90, 407, 562
Hin6I	GCGC	2 cut(s)	98, 655
HinP1I	GCGC	2 cut(s)	98, 655
HincII	GTYRAC	1 cut(s)	227
HindII	GTYRAC	1 cut(s)	227
HinfI	GANTC	5 cut(s)	40, 57, 398, 434, 631
HpaII	CCGG	4 cut(s)	15, 242, 299, 505
HphI	GGTGA	3 cut(s)	231, 451, 463
Hpy166II	GTNNAC	1 cut(s)	227
Hpy188I	TCNGA	3 cut(s)	397, 624, 646
Hpy188III	TCNNGA	3 cut(s)	374, 505, 635
Hpy8I	GTNNAC	1 cut(s)	227
Hpy99I	CGWCG	5 cut(s)	184, 199, 325, 328, 331
HpyAV	CCTTC	1 cut(s)	413
HpyCH4III	ACNGT	1 cut(s)	184
HpyCH4V	TGCA	5 cut(s)	4, 209, 447, 663, 669
HpyF10VI	GCNNNNNNNGC	4 cut(s)	24, 30, 83, 544
HpyF3I	CTNAG	2 cut(s)	150, 221
Hsp92II	CATG	3 cut(s)	90, 407, 562
HspAI	GCGC	2 cut(s)	98, 655
Kpn2I	TCCGGA	1 cut(s)	504
KroI	GCCGGC	1 cut(s)	14
KroNI	GCCGGC	1 cut(s)	16
Kzo9I	GATC	3 cut(s)	187, 516, 649
LguI	GCTCTTC	1 cut(s)	352
LmnI	GCTCC	3 cut(s)	77, 376, 486
Lsp1109I	GCAGC	5 cut(s)	23, 36, 87, 193, 391
MaeI	CTAG	1 cut(s)	513
MaeIII	GTNAC	1 cut(s)	521
MalI	GATC	3 cut(s)	189, 518, 651
MboI	GATC	3 cut(s)	187, 516, 649
MboII	GAAGA	5 cut(s)	119, 128, 339, 342, 611
MflI	RGATCY	1 cut(s)	187
MhlI	GDGCHC	1 cut(s)	555
MluCI	AATT	1 cut(s)	294
MlyI	GAGTC	3 cut(s)	49, 51, 392
MmeI	TCCRAC	2 cut(s)	408, 420
Mph1103I	ATGCAT	1 cut(s)	671
MroI	TCCGGA	1 cut(s)	504
MroNI	GCCGGC	1 cut(s)	14
MspA1I	CMGCKG	1 cut(s)	27
MspI	CCGG	4 cut(s)	15, 242, 299, 505
MspR9I	CCNGG	1 cut(s)	484
MvaI	CCWGG	1 cut(s)	484
MwoI	GCNNNNNNNGC	4 cut(s)	24, 30, 83, 544
NaeI	GCCGGC	1 cut(s)	16
NdeII	GATC	3 cut(s)	187, 516, 649
NgoMIV	GCCGGC	1 cut(s)	14
NlaIII	CATG	3 cut(s)	90, 407, 562
NlaIV	GGNNCC	4 cut(s)	123, 189, 503, 552
NmuCI	GTSAC	1 cut(s)	521
NsiI	ATGCAT	1 cut(s)	671
NspI	RCATGY	1 cut(s)	407
PaqCI	CACCTGC	1 cut(s)	648
PciI	ACATGT	1 cut(s)	403
PciSI	GCTCTTC	1 cut(s)	352
PcsI	WCGNNNNNNNCGW	1 cut(s)	326
PdiI	GCCGGC	1 cut(s)	16
PfeI	GAWTC	2 cut(s)	434, 631
PleI	GAGTC	3 cut(s)	48, 51, 392
PpsI	GAGTC	3 cut(s)	48, 51, 392
PpuMI	RGGWCCY	1 cut(s)	121
PscI	ACATGT	1 cut(s)	403
Psp5II	RGGWCCY	1 cut(s)	121
Psp6I	CCWGG	1 cut(s)	482
PspFI	CCCAGC	1 cut(s)	79
PspGI	CCWGG	1 cut(s)	482
PspN4I	GGNNCC	4 cut(s)	123, 189, 503, 552
PspPI	GGNCC	4 cut(s)	121, 301, 456, 502
PspPPI	RGGWCCY	1 cut(s)	121
PstI	CTGCAG	1 cut(s)	211
PsuI	RGATCY	1 cut(s)	187
RsaI	GTAC	1 cut(s)	178
RsaNI	GTAC	1 cut(s)	177
SalI	GTCGAC	1 cut(s)	225
SapI	GCTCTTC	1 cut(s)	352
Sau3AI	GATC	3 cut(s)	187, 516, 649
Sau96I	GGNCC	4 cut(s)	121, 301, 456, 502
SchI	GAGTC	3 cut(s)	49, 51, 392
ScrFI	CCNGG	1 cut(s)	484
SduI	GDGCHC	1 cut(s)	555
SfcI	CTRYAG	1 cut(s)	207
SinI	GGWCC	2 cut(s)	121, 502
Sse9I	AATT	1 cut(s)	294
SspMI	CTAG	1 cut(s)	513
StyD4I	CCNGG	1 cut(s)	482
TaaI	ACNGT	1 cut(s)	184
TaqI	TCGA	3 cut(s)	43, 226, 309
TasI	AATT	1 cut(s)	294
TauI	GCSGC	5 cut(s)	30, 33, 86, 261, 264
TfiI	GAWTC	2 cut(s)	434, 631
TscAI	CASTG	4 cut(s)	132, 146, 526, 606
TseFI	GTSAC	1 cut(s)	521
TseI	GCWGC	5 cut(s)	11, 24, 100, 206, 379
Tsp45I	GTSAC	1 cut(s)	521
TspRI	CASTG	4 cut(s)	132, 146, 526, 606
VpaK11BI	GGWCC	2 cut(s)	121, 502
XapI	RAATTY	1 cut(s)	294
XceI	RCATGY	1 cut(s)	407
XmiI	GTMKAC	1 cut(s)	226
XspI	CTAG	1 cut(s)	513
Zsp2I	ATGCAT	1 cut(s)	671

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.