Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0004308

Physical Location & Seq

Genomic Coordinates Forward (+)

53907023 .. 53913100

Gene Structure 6078 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG393200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGCAACCGGCACCTGGCGAAAGTGGAGGAGAAGTGACTCGCGGAGGTGGAGGGCTCGGCCGGTTCTGCTCGGCCCCGGCGTCATGGTTGGAAGCGCTGCTTGAGGACGAAGAAGAGGACCCTTTGAAGCCCACCCAGTGCCTCACCGACCTTCTTGCCGATAACTGCGAGGGGCCCAGTTCGACGGCAGTGGGGTTCGGTTCGGATACGACGGCGGATCCAGCTGCGGCGTTTCTCAGACAGAACAGCTCTCCGGCCGACTTTGTCGGGAATTCGAGTGATGGGTCCGAAGGGTATTTCTCCGGGTTCGGGATTCCGACCAGCCTCGACTATGTCTCGAACCCGAATTTCAGTAATGTTTCTTCTTCTTCGGCTAATAAGCGGGTTAGGGATGTGAAAATGGAGGAAGGTGGATTCGAGGAGTCAGGGACTCTGAGGGTTAGGGCAAAGCGAGGTTGTGCTACTCATCCAAGGAGTATTGCTGAAAGGGTCAGGAGGACTCGAATTAGTGACCGGATAAGGAAGCTTCAGGAGCTTGTACCCAACATGGATAAGGTTAGAGCTTCCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0042335 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

190

Amino Acids

20.25

Weight (kDa)

5.05

Isoelectric Point (pI)

48.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35460 AT1G35460 AT4G09180
fragaria_vesca	FvH4_5g31910 FvH4_5g31910 FvH4_5g31910
malus_domestica	MD08G1218800.v1.1 MD15G1407200.v1.1
prunus_persica	Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1
pyrus_communis	pycom08g18940 pycom15g36340
rosa_chinensis	RchiOBHm_Chr7g0227911
rosa_laevigata	RLG00000001604
rosa_multiflora	Rmu_co8004144.1_g000001 Rmu_sc0007737.1_g000003
rosa_roxburghii	Rroxscaffold_3G00231770
rosa_rugosa	Rorug07G0244500.1
rosa_samantha	Rh1CG340400 Rh1DG357700 Rh7AG397700 Rh7BG379200 Rh7CG415900 Rh7DG393200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	10
AccII	CGCG	1 cut(s)	42
AciI	CCGC	4 cut(s)	42, 215, 227, 382
AclWI	GGATC	2 cut(s)	212, 225
AcoI	YGGCCR	2 cut(s)	58, 255
AcsI	RAATTY	2 cut(s)	271, 346
AcuI	CTGAAG	1 cut(s)	512
AcyI	GRCGYC	1 cut(s)	80
AdeI	CACNNNGTG	1 cut(s)	138
AfaI	GTAC	1 cut(s)	540
AfeI	AGCGCT	1 cut(s)	96
AfiI	CCNNNNNNNGG	2 cut(s)	14, 309
AgsI	TTSAA	1 cut(s)	127
AjnI	CCWGG	1 cut(s)	13
AluBI	AGCT	5 cut(s)	224, 249, 526, 535, 563
AluI	AGCT	5 cut(s)	224, 249, 526, 535, 563
Alw26I	GTCTC	1 cut(s)	340
AlwI	GGATC	2 cut(s)	212, 225
Aor51HI	AGCGCT	1 cut(s)	96
AoxI	GGCC	4 cut(s)	58, 72, 173, 255
ApaI	GGGCCC	1 cut(s)	177
ApeKI	GCWGC	2 cut(s)	97, 224
ApoI	RAATTY	2 cut(s)	271, 346
AspLEI	GCGC	1 cut(s)	97
AspS9I	GGNCC	5 cut(s)	73, 118, 173, 174, 285
AsuC2I	CCSGG	2 cut(s)	77, 304
AsuHPI	GGTGA	1 cut(s)	136
AvaII	GGWCC	2 cut(s)	118, 285
BaeGI	GKGCMC	1 cut(s)	177
BamHI	GGATCC	1 cut(s)	217
BanI	GGYRCC	1 cut(s)	10
BanII	GRGCYC	2 cut(s)	57, 177
BarI	GAAGNNNNNNTAC	2 cut(s)	346, 378
BbvI	GCAGC	2 cut(s)	84, 211
BccI	CCATC	1 cut(s)	275
BceAI	ACGGC	2 cut(s)	201, 228
BcgI	CGANNNNNNTGC	2 cut(s)	137, 171
BciT130I	CCWGG	1 cut(s)	15
BciVI	GTATCC	1 cut(s)	199
BcnI	CCSGG	2 cut(s)	77, 304
BcoDI	GTCTC	1 cut(s)	340
BfoI	RGCGCY	1 cut(s)	98
BfuI	GTATCC	1 cut(s)	199
BisI	GCNGC	3 cut(s)	98, 225, 228
BlsI	GCNGC	3 cut(s)	99, 226, 229
Bme1390I	CCNGG	3 cut(s)	15, 77, 304
Bme18I	GGWCC	2 cut(s)	118, 285
BmgT120I	GGNCC	5 cut(s)	73, 118, 173, 174, 285
BmiI	GGNNCC	7 cut(s)	12, 75, 120, 174, 175, 219, 286
BmrFI	CCNGG	3 cut(s)	15, 77, 304
BmrI	ACTGGG	2 cut(s)	130, 171
BmuI	ACTGGG	2 cut(s)	130, 171
BpuEI	CTTGAG	1 cut(s)	122
BpuMI	CCSGG	2 cut(s)	77, 304
BsaHI	GRCGYC	1 cut(s)	80
BsaJI	CCNNGG	2 cut(s)	75, 470
BsaWI	WCCGGW	1 cut(s)	513
BsaXI	ACNNNNNCTCC	2 cut(s)	18, 48
Bsc4I	CCNNNNNNNGG	2 cut(s)	14, 309
Bse118I	RCCGGY	2 cut(s)	7, 60
Bse1I	ACTGG	2 cut(s)	136, 177
BseBI	CCWGG	1 cut(s)	15
BseDI	CCNNGG	2 cut(s)	75, 470
BseGI	GGATG	2 cut(s)	397, 466
BseLI	CCNNNNNNNGG	2 cut(s)	14, 309
BseMII	CTCAG	2 cut(s)	250, 425
BseNI	ACTGG	2 cut(s)	136, 177
BseRI	GAGGAG	2 cut(s)	42, 434
BseSI	GKGCMC	1 cut(s)	177
BseX3I	CGGCCG	2 cut(s)	58, 255
BseXI	GCAGC	2 cut(s)	84, 211
Bsh1236I	CGCG	1 cut(s)	42
Bsh1285I	CGRYCG	2 cut(s)	61, 258
BshFI	GGCC	4 cut(s)	60, 74, 175, 257
BshNI	GGYRCC	1 cut(s)	10
BsiEI	CGRYCG	2 cut(s)	61, 258
BsiSI	CCGG	6 cut(s)	8, 61, 77, 254, 303, 514
BslFI	GGGAC	1 cut(s)	442
BslI	CCNNNNNNNGG	2 cut(s)	14, 309
BsmAI	GTCTC	1 cut(s)	340
BsmFI	GGGAC	1 cut(s)	442
BsnI	GGCC	4 cut(s)	60, 74, 175, 257
Bsp120I	GGGCCC	1 cut(s)	173
Bsp1286I	GDGCHC	2 cut(s)	57, 177
Bsp143I	GATC	1 cut(s)	217
BspACI	CCGC	4 cut(s)	42, 215, 227, 382
BspANI	GGCC	4 cut(s)	60, 74, 175, 257
BspCNI	CTCAG	2 cut(s)	249, 426
BspFNI	CGCG	1 cut(s)	42
BspLI	GGNNCC	7 cut(s)	12, 75, 120, 174, 175, 219, 286
BspPI	GGATC	2 cut(s)	212, 225
BspT107I	GGYRCC	1 cut(s)	10
BsrFI	RCCGGY	2 cut(s)	7, 60
BsrI	ACTGG	2 cut(s)	136, 177
BssAI	RCCGGY	2 cut(s)	7, 60
BssECI	CCNNGG	2 cut(s)	75, 470
BssMI	GATC	1 cut(s)	217
BssNI	GRCGYC	1 cut(s)	80
BssT1I	CCWWGG	1 cut(s)	470
Bst2UI	CCWGG	1 cut(s)	15
Bst6I	CTCTTC	1 cut(s)	108
BstACI	GRCGYC	1 cut(s)	80
BstDEI	CTNAG	2 cut(s)	236, 434
BstF5I	GGATG	2 cut(s)	397, 466
BstFNI	CGCG	1 cut(s)	42
BstH2I	RGCGCY	1 cut(s)	98
BstHHI	GCGC	1 cut(s)	97
BstKTI	GATC	1 cut(s)	220
BstMAI	GTCTC	1 cut(s)	340
BstMBI	GATC	1 cut(s)	217
BstMCI	CGRYCG	2 cut(s)	61, 258
BstMWI	GCNNNNNNNGC	3 cut(s)	66, 221, 532
BstNI	CCWGG	1 cut(s)	15
BstSCI	CCNGG	3 cut(s)	13, 75, 302
BstSLI	GKGCMC	1 cut(s)	177
BstUI	CGCG	1 cut(s)	42
BstV1I	GCAGC	2 cut(s)	84, 211
BstX2I	RGATCY	1 cut(s)	217
BstYI	RGATCY	1 cut(s)	217
BstZI	CGGCCG	2 cut(s)	58, 255
BsuI	GTATCC	1 cut(s)	199
BsuRI	GGCC	4 cut(s)	60, 74, 175, 257
BtsCI	GGATG	2 cut(s)	397, 466
BtsI	GCAGTG	1 cut(s)	195
BtsIMutI	CAGTG	2 cut(s)	143, 195
CfoI	GCGC	1 cut(s)	97
Cfr10I	RCCGGY	2 cut(s)	7, 60
Cfr13I	GGNCC	5 cut(s)	73, 118, 173, 174, 285
CseI	GACGC	1 cut(s)	69
Csp6I	GTAC	1 cut(s)	539
CviAII	CATG	2 cut(s)	84, 547
CviQI	GTAC	1 cut(s)	539
DdeI	CTNAG	2 cut(s)	236, 434
DpnI	GATC	1 cut(s)	219
DpnII	GATC	1 cut(s)	217
DraIII	CACNNNGTG	1 cut(s)	138
EaeI	YGGCCR	2 cut(s)	58, 255
EagI	CGGCCG	2 cut(s)	58, 255
Eam1104I	CTCTTC	1 cut(s)	108
EarI	CTCTTC	1 cut(s)	108
EciI	GGCGGA	1 cut(s)	230
EclXI	CGGCCG	2 cut(s)	58, 255
Eco130I	CCWWGG	1 cut(s)	470
Eco24I	GRGCYC	2 cut(s)	57, 177
Eco47I	GGWCC	2 cut(s)	118, 285
Eco47III	AGCGCT	1 cut(s)	96
Eco52I	CGGCCG	2 cut(s)	58, 255
Eco57I	CTGAAG	1 cut(s)	512
EcoO109I	RGGNCCY	2 cut(s)	118, 173
EcoRI	GAATTC	1 cut(s)	271
EcoRII	CCWGG	1 cut(s)	13
EcoT14I	CCWWGG	1 cut(s)	470
EcoT38I	GRGCYC	2 cut(s)	57, 177
ErhI	CCWWGG	1 cut(s)	470
FaeI	CATG	2 cut(s)	87, 550
FaiI	YATR	3 cut(s)	85, 333, 548
FalI	AAGNNNNNCTT	2 cut(s)	84, 116
FaqI	GGGAC	1 cut(s)	442
FatI	CATG	2 cut(s)	83, 546
FauI	CCCGC	1 cut(s)	375
Fnu4HI	GCNGC	3 cut(s)	98, 225, 228
FokI	GGATG	2 cut(s)	404, 453
FriOI	GRGCYC	2 cut(s)	57, 177
Fsp4HI	GCNGC	3 cut(s)	98, 225, 228
GlaI	GCGC	1 cut(s)	96
GluI	GCNGC	3 cut(s)	98, 225, 228
HaeII	RGCGCY	1 cut(s)	98
HaeIII	GGCC	4 cut(s)	60, 74, 175, 257
HapII	CCGG	6 cut(s)	8, 61, 77, 254, 303, 514
HgaI	GACGC	1 cut(s)	69
HhaI	GCGC	1 cut(s)	97
Hin1I	GRCGYC	1 cut(s)	80
Hin1II	CATG	2 cut(s)	87, 550
Hin6I	GCGC	1 cut(s)	95
HinP1I	GCGC	1 cut(s)	95
HindIII	AAGCTT	1 cut(s)	524
HinfI	GANTC	6 cut(s)	37, 313, 414, 422, 430, 499
HpaII	CCGG	6 cut(s)	8, 61, 77, 254, 303, 514
HphI	GGTGA	1 cut(s)	136
Hpy188I	TCNGA	5 cut(s)	205, 239, 289, 318, 435
Hpy188III	TCNNGA	5 cut(s)	268, 310, 337, 493, 530
Hpy99I	CGWCG	2 cut(s)	187, 214
HpyAV	CCTTC	3 cut(s)	161, 284, 401
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	3 cut(s)	66, 221, 532
HpyF3I	CTNAG	2 cut(s)	236, 434
Hsp92I	GRCGYC	1 cut(s)	80
Hsp92II	CATG	2 cut(s)	87, 550
HspAI	GCGC	1 cut(s)	95
Kzo9I	GATC	1 cut(s)	217
LmnI	GCTCC	1 cut(s)	532
Lsp1109I	GCAGC	2 cut(s)	84, 211
MaeIII	GTNAC	2 cut(s)	34, 509
MalI	GATC	1 cut(s)	219
MboI	GATC	1 cut(s)	217
MboII	GAAGA	5 cut(s)	122, 125, 354, 357, 360
MflI	RGATCY	1 cut(s)	217
MhlI	GDGCHC	2 cut(s)	57, 177
MluCI	AATT	3 cut(s)	271, 346, 504
MlyI	GAGTC	4 cut(s)	31, 424, 431, 493
MmeI	TCCRAC	2 cut(s)	69, 341
MspA1I	CMGCKG	1 cut(s)	224
MspI	CCGG	6 cut(s)	8, 61, 77, 254, 303, 514
MspR9I	CCNGG	3 cut(s)	15, 77, 304
MvaI	CCWGG	1 cut(s)	15
MvnI	CGCG	1 cut(s)	42
MwoI	GCNNNNNNNGC	3 cut(s)	66, 221, 532
NciI	CCSGG	2 cut(s)	77, 304
NdeII	GATC	1 cut(s)	217
NlaIII	CATG	2 cut(s)	87, 550
NlaIV	GGNNCC	7 cut(s)	12, 75, 120, 174, 175, 219, 286
NmeAIII	GCCGAG	2 cut(s)	36, 50
NmuCI	GTSAC	2 cut(s)	34, 509
PcsI	WCGNNNNNNNCGW	1 cut(s)	77
PfeI	GAWTC	2 cut(s)	313, 414
PflFI	GACNNNGTC	2 cut(s)	263, 332
PkrI	GCNGC	3 cut(s)	99, 226, 229
PleI	GAGTC	4 cut(s)	31, 424, 430, 493
PpsI	GAGTC	4 cut(s)	31, 424, 430, 493
PpuMI	RGGWCCY	1 cut(s)	118
Psp5II	RGGWCCY	1 cut(s)	118
Psp6I	CCWGG	1 cut(s)	13
PspGI	CCWGG	1 cut(s)	13
PspN4I	GGNNCC	7 cut(s)	12, 75, 120, 174, 175, 219, 286
PspOMI	GGGCCC	1 cut(s)	173
PspPI	GGNCC	5 cut(s)	73, 118, 173, 174, 285
PspPPI	RGGWCCY	1 cut(s)	118
PsuI	RGATCY	1 cut(s)	217
PsyI	GACNNNGTC	2 cut(s)	263, 332
PvuII	CAGCTG	1 cut(s)	224
RsaI	GTAC	1 cut(s)	540
RsaNI	GTAC	1 cut(s)	539
SatI	GCNGC	3 cut(s)	98, 225, 228
Sau3AI	GATC	1 cut(s)	217
Sau96I	GGNCC	5 cut(s)	73, 118, 173, 174, 285
SchI	GAGTC	4 cut(s)	31, 424, 431, 493
ScrFI	CCNGG	3 cut(s)	15, 77, 304
SduI	GDGCHC	2 cut(s)	57, 177
SinI	GGWCC	2 cut(s)	118, 285
SmlI	CTYRAG	1 cut(s)	101
SmoI	CTYRAG	1 cut(s)	101
Sse9I	AATT	3 cut(s)	271, 346, 504
SsiI	CCGC	4 cut(s)	42, 215, 227, 382
StyD4I	CCNGG	3 cut(s)	13, 75, 302
StyI	CCWWGG	1 cut(s)	470
TaqI	TCGA	6 cut(s)	182, 275, 327, 338, 417, 502
TasI	AATT	3 cut(s)	271, 346, 504
TauI	GCSGC	1 cut(s)	230
TfiI	GAWTC	2 cut(s)	313, 414
TscAI	CASTG	2 cut(s)	143, 195
TseFI	GTSAC	2 cut(s)	34, 509
TseI	GCWGC	2 cut(s)	97, 224
Tsp45I	GTSAC	2 cut(s)	34, 509
TspRI	CASTG	2 cut(s)	143, 195
Tth111I	GACNNNGTC	2 cut(s)	263, 332
VpaK11BI	GGWCC	2 cut(s)	118, 285
XapI	RAATTY	2 cut(s)	271, 346

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.