Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0004308

Physical Location & Seq

Genomic Coordinates Reverse (-)

17155125 .. 17157719

Gene Structure 2595 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00231770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGCAACCGGCACCTGGCGAAAGTGGAGGAGAAGTGACTCGCGGAGGTGGAGGACTCGGCCGGTTCTGCTCGGCCCCGGCGTCATGGTTGGAAGCGCTGCTTGAGGACGAAGAAGAGGACCCTTTGAAGCCCACCCAGTGCCTCACCGACCTTCTTGCCGATAACTGCGAGGGGCCCAGTACGACGGCAGTGGGGTTCGGTTCGGATACGACGGCGGATCCAGCTGCGGCGTTTCTCAGACAGAACAGCTCTCCGGCCGACTTTGTCGGGAATTCGAGTGATGGGTCCGAAGGGTATTTCTCCGGCTTCGGGATTCCGGCCAGCCTCGACTATGTCTCGAACCCGAATGTTTCTTCTTCTTCGGCTAATAAGCGGGTTAGGGAGGTGAAAATGGAGGAAGGTGGATTCGAGGAGTCAGGGTCTCTGAGGGTTAGGGCAAAGCGAGGTTGTGCTACTCATCCAAGGAGTATTGCTGAAAGGGTCAGGAGGACTCGAATTAGTGACCGGATAAGGAAGCTTCAGGAGCTTGTACCCAACATGGATAAGCAAACTAATACCGCAGATATGTTAGATGAGGCAGTGGAGTATGTGAAGTTTCTTCAGAAGCAGATTCAGGAACTCTCAGAGCATCAGCGCAGGTGCAAATGCATCGCTAAAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0042335 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

220

Amino Acids

23.86

Weight (kDa)

5.1

Isoelectric Point (pI)

50.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	156 - 201	1.2e-09	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	159 - 204	4.8e-06	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35460 AT1G35460 AT4G09180
fragaria_vesca	FvH4_5g31910 FvH4_5g31910 FvH4_5g31910
malus_domestica	MD08G1218800.v1.1 MD15G1407200.v1.1
prunus_persica	Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1
pyrus_communis	pycom08g18940 pycom15g36340
rosa_chinensis	RchiOBHm_Chr7g0227911
rosa_laevigata	RLG00000001604
rosa_multiflora	Rmu_co8004144.1_g000001 Rmu_sc0007737.1_g000003
rosa_roxburghii	Rroxscaffold_3G00231770
rosa_rugosa	Rorug07G0244500.1
rosa_samantha	Rh1CG340400 Rh1DG357700 Rh7AG397700 Rh7BG379200 Rh7CG415900 Rh7DG393200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	627
Acc36I	ACCTGC	1 cut(s)	627
AccB1I	GGYRCC	1 cut(s)	10
AccII	CGCG	1 cut(s)	42
AciI	CCGC	5 cut(s)	42, 215, 227, 373, 558
AclWI	GGATC	2 cut(s)	212, 225
AcoI	YGGCCR	3 cut(s)	58, 255, 318
AcsI	RAATTY	1 cut(s)	271
AcuI	CTGAAG	2 cut(s)	503, 584
AcyI	GRCGYC	1 cut(s)	80
AdeI	CACNNNGTG	1 cut(s)	138
AfaI	GTAC	2 cut(s)	181, 531
AfeI	AGCGCT	1 cut(s)	96
AfiI	CCNNNNNNNGG	2 cut(s)	14, 309
AgsI	TTSAA	1 cut(s)	127
AjnI	CCWGG	1 cut(s)	13
AluBI	AGCT	4 cut(s)	224, 249, 517, 526
AluI	AGCT	4 cut(s)	224, 249, 517, 526
Alw26I	GTCTC	2 cut(s)	340, 426
AlwI	GGATC	2 cut(s)	212, 225
Aor51HI	AGCGCT	1 cut(s)	96
AoxI	GGCC	5 cut(s)	58, 72, 173, 255, 318
ApaI	GGGCCC	1 cut(s)	177
ApeKI	GCWGC	2 cut(s)	97, 224
ApoI	RAATTY	1 cut(s)	271
AspLEI	GCGC	2 cut(s)	97, 636
AspS9I	GGNCC	5 cut(s)	73, 118, 173, 174, 285
AsuC2I	CCSGG	1 cut(s)	77
AsuHPI	GGTGA	2 cut(s)	136, 397
AvaII	GGWCC	2 cut(s)	118, 285
BaeGI	GKGCMC	1 cut(s)	177
BamHI	GGATCC	1 cut(s)	217
BanI	GGYRCC	1 cut(s)	10
BanII	GRGCYC	1 cut(s)	177
BbvI	GCAGC	2 cut(s)	84, 211
BccI	CCATC	1 cut(s)	275
BceAI	ACGGC	2 cut(s)	201, 228
BcgI	CGANNNNNNTGC	3 cut(s)	137, 171, 631
BciT130I	CCWGG	1 cut(s)	15
BciVI	GTATCC	1 cut(s)	199
BcnI	CCSGG	1 cut(s)	77
BcoDI	GTCTC	2 cut(s)	340, 426
BfoI	RGCGCY	1 cut(s)	98
BfuAI	ACCTGC	1 cut(s)	627
BfuI	GTATCC	1 cut(s)	199
BisI	GCNGC	3 cut(s)	98, 225, 228
BlsI	GCNGC	3 cut(s)	99, 226, 229
Bme1390I	CCNGG	2 cut(s)	15, 77
Bme18I	GGWCC	2 cut(s)	118, 285
BmgT120I	GGNCC	5 cut(s)	73, 118, 173, 174, 285
BmiI	GGNNCC	7 cut(s)	12, 75, 120, 174, 175, 219, 286
BmrFI	CCNGG	2 cut(s)	15, 77
BmrI	ACTGGG	2 cut(s)	130, 171
BmsI	GCATC	2 cut(s)	637, 657
BmuI	ACTGGG	2 cut(s)	130, 171
BpuEI	CTTGAG	1 cut(s)	122
BpuMI	CCSGG	1 cut(s)	77
BsaHI	GRCGYC	1 cut(s)	80
BsaI	GGTCTC	1 cut(s)	426
BsaJI	CCNNGG	2 cut(s)	75, 461
BsaWI	WCCGGW	1 cut(s)	504
BsaXI	ACNNNNNCTCC	4 cut(s)	18, 48, 404, 434
Bsc4I	CCNNNNNNNGG	2 cut(s)	14, 309
Bse118I	RCCGGY	2 cut(s)	7, 60
Bse1I	ACTGG	2 cut(s)	136, 177
BseBI	CCWGG	1 cut(s)	15
BseDI	CCNNGG	2 cut(s)	75, 461
BseGI	GGATG	1 cut(s)	457
BseLI	CCNNNNNNNGG	2 cut(s)	14, 309
BseMII	CTCAG	3 cut(s)	250, 416, 636
BseNI	ACTGG	2 cut(s)	136, 177
BseRI	GAGGAG	2 cut(s)	42, 425
BseSI	GKGCMC	1 cut(s)	177
BseX3I	CGGCCG	2 cut(s)	58, 255
BseXI	GCAGC	2 cut(s)	84, 211
Bsh1236I	CGCG	1 cut(s)	42
Bsh1285I	CGRYCG	2 cut(s)	61, 258
BshFI	GGCC	5 cut(s)	60, 74, 175, 257, 320
BshNI	GGYRCC	1 cut(s)	10
BsiEI	CGRYCG	2 cut(s)	61, 258
BsiSI	CCGG	7 cut(s)	8, 61, 77, 254, 303, 317, 505
BslI	CCNNNNNNNGG	2 cut(s)	14, 309
BsmAI	GTCTC	2 cut(s)	340, 426
BsnI	GGCC	5 cut(s)	60, 74, 175, 257, 320
Bso31I	GGTCTC	1 cut(s)	426
Bsp120I	GGGCCC	1 cut(s)	173
Bsp1286I	GDGCHC	1 cut(s)	177
Bsp143I	GATC	1 cut(s)	217
BspACI	CCGC	5 cut(s)	42, 215, 227, 373, 558
BspANI	GGCC	5 cut(s)	60, 74, 175, 257, 320
BspCNI	CTCAG	3 cut(s)	249, 417, 635
BspFNI	CGCG	1 cut(s)	42
BspLI	GGNNCC	7 cut(s)	12, 75, 120, 174, 175, 219, 286
BspMI	ACCTGC	1 cut(s)	627
BspPI	GGATC	2 cut(s)	212, 225
BspT107I	GGYRCC	1 cut(s)	10
BspTNI	GGTCTC	1 cut(s)	426
BsrFI	RCCGGY	2 cut(s)	7, 60
BsrI	ACTGG	2 cut(s)	136, 177
BssAI	RCCGGY	2 cut(s)	7, 60
BssECI	CCNNGG	2 cut(s)	75, 461
BssMI	GATC	1 cut(s)	217
BssNI	GRCGYC	1 cut(s)	80
BssT1I	CCWWGG	1 cut(s)	461
Bst2UI	CCWGG	1 cut(s)	15
Bst6I	CTCTTC	1 cut(s)	108
BstACI	GRCGYC	1 cut(s)	80
BstC8I	GCNNGC	1 cut(s)	322
BstDEI	CTNAG	3 cut(s)	236, 425, 622
BstF5I	GGATG	1 cut(s)	457
BstFNI	CGCG	1 cut(s)	42
BstH2I	RGCGCY	1 cut(s)	98
BstHHI	GCGC	2 cut(s)	97, 636
BstKTI	GATC	1 cut(s)	220
BstMAI	GTCTC	2 cut(s)	340, 426
BstMBI	GATC	1 cut(s)	217
BstMCI	CGRYCG	2 cut(s)	61, 258
BstMWI	GCNNNNNNNGC	3 cut(s)	66, 221, 523
BstNI	CCWGG	1 cut(s)	15
BstSCI	CCNGG	2 cut(s)	13, 75
BstSLI	GKGCMC	1 cut(s)	177
BstUI	CGCG	1 cut(s)	42
BstV1I	GCAGC	2 cut(s)	84, 211
BstX2I	RGATCY	1 cut(s)	217
BstYI	RGATCY	1 cut(s)	217
BstZI	CGGCCG	2 cut(s)	58, 255
BsuI	GTATCC	1 cut(s)	199
BsuRI	GGCC	5 cut(s)	60, 74, 175, 257, 320
BtgZI	GCGATG	1 cut(s)	634
BtsCI	GGATG	1 cut(s)	457
BtsI	GCAGTG	2 cut(s)	195, 585
BtsIMutI	CAGTG	3 cut(s)	143, 195, 585
BveI	ACCTGC	1 cut(s)	627
Cac8I	GCNNGC	1 cut(s)	322
CfoI	GCGC	2 cut(s)	97, 636
Cfr10I	RCCGGY	2 cut(s)	7, 60
Cfr13I	GGNCC	5 cut(s)	73, 118, 173, 174, 285
CseI	GACGC	1 cut(s)	69
Csp6I	GTAC	2 cut(s)	180, 530
CviAII	CATG	2 cut(s)	84, 538
CviQI	GTAC	2 cut(s)	180, 530
DdeI	CTNAG	3 cut(s)	236, 425, 622
DpnI	GATC	1 cut(s)	219
DpnII	GATC	1 cut(s)	217
DraIII	CACNNNGTG	1 cut(s)	138
EaeI	YGGCCR	3 cut(s)	58, 255, 318
EagI	CGGCCG	2 cut(s)	58, 255
Eam1104I	CTCTTC	1 cut(s)	108
EarI	CTCTTC	1 cut(s)	108
EciI	GGCGGA	1 cut(s)	230
EclXI	CGGCCG	2 cut(s)	58, 255
Eco130I	CCWWGG	1 cut(s)	461
Eco24I	GRGCYC	1 cut(s)	177
Eco31I	GGTCTC	1 cut(s)	426
Eco47I	GGWCC	2 cut(s)	118, 285
Eco47III	AGCGCT	1 cut(s)	96
Eco52I	CGGCCG	2 cut(s)	58, 255
Eco57I	CTGAAG	2 cut(s)	503, 584
EcoO109I	RGGNCCY	2 cut(s)	118, 173
EcoRI	GAATTC	1 cut(s)	271
EcoRII	CCWGG	1 cut(s)	13
EcoT14I	CCWWGG	1 cut(s)	461
EcoT22I	ATGCAT	1 cut(s)	650
EcoT38I	GRGCYC	1 cut(s)	177
ErhI	CCWWGG	1 cut(s)	461
FaeI	CATG	2 cut(s)	87, 541
FaiI	YATR	5 cut(s)	85, 333, 539, 566, 588
FalI	AAGNNNNNCTT	2 cut(s)	84, 116
FatI	CATG	2 cut(s)	83, 537
FauI	CCCGC	1 cut(s)	366
Fnu4HI	GCNGC	3 cut(s)	98, 225, 228
FokI	GGATG	1 cut(s)	444
FriOI	GRGCYC	1 cut(s)	177
Fsp4HI	GCNGC	3 cut(s)	98, 225, 228
GlaI	GCGC	2 cut(s)	96, 635
GluI	GCNGC	3 cut(s)	98, 225, 228
HaeII	RGCGCY	1 cut(s)	98
HaeIII	GGCC	5 cut(s)	60, 74, 175, 257, 320
HapII	CCGG	7 cut(s)	8, 61, 77, 254, 303, 317, 505
HgaI	GACGC	1 cut(s)	69
HhaI	GCGC	2 cut(s)	97, 636
Hin1I	GRCGYC	1 cut(s)	80
Hin1II	CATG	2 cut(s)	87, 541
Hin6I	GCGC	2 cut(s)	95, 634
HinP1I	GCGC	2 cut(s)	95, 634
HindIII	AAGCTT	1 cut(s)	515
HinfI	GANTC	7 cut(s)	37, 54, 313, 405, 413, 490, 610
HpaII	CCGG	7 cut(s)	8, 61, 77, 254, 303, 317, 505
HphI	GGTGA	2 cut(s)	136, 397
Hpy188I	TCNGA	6 cut(s)	205, 239, 289, 426, 603, 625
Hpy188III	TCNNGA	6 cut(s)	268, 310, 337, 484, 521, 614
Hpy99I	CGWCG	2 cut(s)	187, 214
HpyAV	CCTTC	3 cut(s)	161, 284, 392
HpyCH4V	TGCA	3 cut(s)	4, 642, 648
HpyF10VI	GCNNNNNNNGC	3 cut(s)	66, 221, 523
HpyF3I	CTNAG	3 cut(s)	236, 425, 622
Hsp92I	GRCGYC	1 cut(s)	80
Hsp92II	CATG	2 cut(s)	87, 541
HspAI	GCGC	2 cut(s)	95, 634
Kzo9I	GATC	1 cut(s)	217
LmnI	GCTCC	1 cut(s)	523
Lsp1109I	GCAGC	2 cut(s)	84, 211
LweI	GCATC	2 cut(s)	637, 657
MaeIII	GTNAC	2 cut(s)	34, 500
MalI	GATC	1 cut(s)	219
MboI	GATC	1 cut(s)	217
MboII	GAAGA	6 cut(s)	122, 125, 345, 348, 351, 590
MflI	RGATCY	1 cut(s)	217
MhlI	GDGCHC	1 cut(s)	177
MluCI	AATT	2 cut(s)	271, 495
MlyI	GAGTC	4 cut(s)	31, 48, 422, 484
MmeI	TCCRAC	1 cut(s)	69
Mph1103I	ATGCAT	1 cut(s)	650
MspA1I	CMGCKG	1 cut(s)	224
MspI	CCGG	7 cut(s)	8, 61, 77, 254, 303, 317, 505
MspR9I	CCNGG	2 cut(s)	15, 77
MvaI	CCWGG	1 cut(s)	15
MvnI	CGCG	1 cut(s)	42
MwoI	GCNNNNNNNGC	3 cut(s)	66, 221, 523
NciI	CCSGG	1 cut(s)	77
NdeII	GATC	1 cut(s)	217
NlaIII	CATG	2 cut(s)	87, 541
NlaIV	GGNNCC	7 cut(s)	12, 75, 120, 174, 175, 219, 286
NmeAIII	GCCGAG	2 cut(s)	36, 50
NmuCI	GTSAC	2 cut(s)	34, 500
NsiI	ATGCAT	1 cut(s)	650
PaqCI	CACCTGC	1 cut(s)	627
PcsI	WCGNNNNNNNCGW	1 cut(s)	77
PfeI	GAWTC	3 cut(s)	313, 405, 610
PflFI	GACNNNGTC	2 cut(s)	263, 332
PkrI	GCNGC	3 cut(s)	99, 226, 229
PleI	GAGTC	4 cut(s)	31, 48, 421, 484
PpsI	GAGTC	4 cut(s)	31, 48, 421, 484
PpuMI	RGGWCCY	1 cut(s)	118
Psp5II	RGGWCCY	1 cut(s)	118
Psp6I	CCWGG	1 cut(s)	13
PspGI	CCWGG	1 cut(s)	13
PspN4I	GGNNCC	7 cut(s)	12, 75, 120, 174, 175, 219, 286
PspOMI	GGGCCC	1 cut(s)	173
PspPI	GGNCC	5 cut(s)	73, 118, 173, 174, 285
PspPPI	RGGWCCY	1 cut(s)	118
PsuI	RGATCY	1 cut(s)	217
PsyI	GACNNNGTC	2 cut(s)	263, 332
PvuII	CAGCTG	1 cut(s)	224
RsaI	GTAC	2 cut(s)	181, 531
RsaNI	GTAC	2 cut(s)	180, 530
SatI	GCNGC	3 cut(s)	98, 225, 228
Sau3AI	GATC	1 cut(s)	217
Sau96I	GGNCC	5 cut(s)	73, 118, 173, 174, 285
SchI	GAGTC	4 cut(s)	31, 48, 422, 484
ScrFI	CCNGG	2 cut(s)	15, 77
SduI	GDGCHC	1 cut(s)	177
SfaNI	GCATC	2 cut(s)	637, 657
SinI	GGWCC	2 cut(s)	118, 285
SmlI	CTYRAG	1 cut(s)	101
SmoI	CTYRAG	1 cut(s)	101
Sse9I	AATT	2 cut(s)	271, 495
SsiI	CCGC	5 cut(s)	42, 215, 227, 373, 558
StyD4I	CCNGG	2 cut(s)	13, 75
StyI	CCWWGG	1 cut(s)	461
TaqI	TCGA	5 cut(s)	275, 327, 338, 408, 493
TasI	AATT	2 cut(s)	271, 495
TauI	GCSGC	1 cut(s)	230
TfiI	GAWTC	3 cut(s)	313, 405, 610
TscAI	CASTG	3 cut(s)	143, 195, 585
TseFI	GTSAC	2 cut(s)	34, 500
TseI	GCWGC	2 cut(s)	97, 224
Tsp45I	GTSAC	2 cut(s)	34, 500
TspRI	CASTG	3 cut(s)	143, 195, 585
Tth111I	GACNNNGTC	2 cut(s)	263, 332
VpaK11BI	GGWCC	2 cut(s)	118, 285
XapI	RAATTY	1 cut(s)	271
Zsp2I	ATGCAT	1 cut(s)	650

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.