Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0004308

Physical Location & Seq

Genomic Coordinates Forward (+)

61504797 .. 61513629

Gene Structure 8833 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG340400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGCAACCGGCACCTGGCAGAAGTAGAGGAGAAGTGACTCGCGAAGGACTTGGCCGGTTATGCTCGACCCCTGCGTCATGTTTGGAAGCGCTGCTTGAGGACGAAGAAGAGGACCATTTGATGCCGACCCAGTGCCTCACTGACCTTCTTGCCGATAACTGCGAGGGGCCTAGTTCGATGGTGACGACAGCAGTGGGGTTTGCTTCGAATACGACGACAGATCCAGCTGCTGCATTTCTCAGACAGAACAGCTCTTCGGCCAACTTTGTCGAGAATTTGAGTGATGGGTCCGAATGGTATTTCTCCGGCTTCGAGATTCTGGCCAGCCTCGACTATGCCTCGCACTCAAATTTCAGTAGCGTTTCTTCTTCTTTGGTTAATAAGCGGGTTAGGGAGGTGGCAACAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0042335 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

136

Amino Acids

14.59

Weight (kDa)

4.36

Isoelectric Point (pI)

51.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35460 AT1G35460 AT4G09180
fragaria_vesca	FvH4_5g31910 FvH4_5g31910 FvH4_5g31910
malus_domestica	MD08G1218800.v1.1 MD15G1407200.v1.1
prunus_persica	Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1
pyrus_communis	pycom08g18940 pycom15g36340
rosa_chinensis	RchiOBHm_Chr7g0227911
rosa_laevigata	RLG00000001604
rosa_multiflora	Rmu_co8004144.1_g000001 Rmu_sc0007737.1_g000003
rosa_roxburghii	Rroxscaffold_3G00231770
rosa_rugosa	Rorug07G0244500.1
rosa_samantha	Rh1CG340400 Rh1DG357700 Rh7AG397700 Rh7BG379200 Rh7CG415900 Rh7DG393200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	73
AccB1I	GGYRCC	1 cut(s)	10
AccII	CGCG	1 cut(s)	42
AciI	CCGC	1 cut(s)	385
AclWI	GGATC	1 cut(s)	215
AcoI	YGGCCR	3 cut(s)	52, 258, 321
AcsI	RAATTY	2 cut(s)	274, 349
AfeI	AGCGCT	1 cut(s)	90
AfiI	CCNNNNNNNGG	1 cut(s)	14
AjnI	CCWGG	1 cut(s)	13
AluBI	AGCT	2 cut(s)	227, 252
AluI	AGCT	2 cut(s)	227, 252
AlwI	GGATC	1 cut(s)	215
AlwNI	CAGNNNCTG	1 cut(s)	230
Aor51HI	AGCGCT	1 cut(s)	90
AoxI	GGCC	4 cut(s)	52, 167, 258, 321
ApeKI	GCWGC	3 cut(s)	91, 227, 230
ApoI	RAATTY	2 cut(s)	274, 349
AspLEI	GCGC	1 cut(s)	91
AspS9I	GGNCC	3 cut(s)	112, 167, 288
AsuHPI	GGTGA	1 cut(s)	193
AsuII	TTCGAA	1 cut(s)	206
AvaII	GGWCC	2 cut(s)	112, 288
BalI	TGGCCA	1 cut(s)	323
BanI	GGYRCC	1 cut(s)	10
BarI	GAAGNNNNNNTAC	2 cut(s)	349, 381
BbvI	GCAGC	3 cut(s)	78, 214, 217
BccI	CCATC	2 cut(s)	172, 278
BciT130I	CCWGG	1 cut(s)	15
BfaI	CTAG	1 cut(s)	171
BfoI	RGCGCY	1 cut(s)	92
BisI	GCNGC	3 cut(s)	92, 228, 231
BlsI	GCNGC	3 cut(s)	93, 229, 232
Bme1390I	CCNGG	1 cut(s)	15
Bme18I	GGWCC	2 cut(s)	112, 288
BmgT120I	GGNCC	3 cut(s)	112, 167, 288
BmiI	GGNNCC	3 cut(s)	12, 168, 289
BmrFI	CCNGG	1 cut(s)	15
BmrI	ACTGGG	1 cut(s)	124
BmsI	GCATC	1 cut(s)	111
BmuI	ACTGGG	1 cut(s)	124
Bpu14I	TTCGAA	1 cut(s)	206
BpuEI	CTTGAG	1 cut(s)	116
Bsc4I	CCNNNNNNNGG	1 cut(s)	14
Bse118I	RCCGGY	2 cut(s)	7, 54
Bse1I	ACTGG	1 cut(s)	130
BseBI	CCWGG	1 cut(s)	15
BseLI	CCNNNNNNNGG	1 cut(s)	14
BseMII	CTCAG	1 cut(s)	253
BseNI	ACTGG	1 cut(s)	130
BseRI	GAGGAG	1 cut(s)	42
BseXI	GCAGC	3 cut(s)	78, 214, 217
Bsh1236I	CGCG	1 cut(s)	42
BshFI	GGCC	4 cut(s)	54, 169, 260, 323
BshNI	GGYRCC	1 cut(s)	10
BsiSI	CCGG	3 cut(s)	8, 55, 306
BslI	CCNNNNNNNGG	1 cut(s)	14
BsnI	GGCC	4 cut(s)	54, 169, 260, 323
Bsp119I	TTCGAA	1 cut(s)	206
Bsp143I	GATC	1 cut(s)	220
Bsp68I	TCGCGA	1 cut(s)	42
BspACI	CCGC	1 cut(s)	385
BspANI	GGCC	4 cut(s)	54, 169, 260, 323
BspCNI	CTCAG	1 cut(s)	252
BspFNI	CGCG	1 cut(s)	42
BspLI	GGNNCC	3 cut(s)	12, 168, 289
BspPI	GGATC	1 cut(s)	215
BspQI	GCTCTTC	1 cut(s)	259
BspT104I	TTCGAA	1 cut(s)	206
BspT107I	GGYRCC	1 cut(s)	10
BsrFI	RCCGGY	2 cut(s)	7, 54
BsrI	ACTGG	1 cut(s)	130
BssAI	RCCGGY	2 cut(s)	7, 54
BssMI	GATC	1 cut(s)	220
Bst2UI	CCWGG	1 cut(s)	15
Bst6I	CTCTTC	2 cut(s)	102, 259
BstBI	TTCGAA	1 cut(s)	206
BstC8I	GCNNGC	1 cut(s)	325
BstDEI	CTNAG	1 cut(s)	239
BstFNI	CGCG	1 cut(s)	42
BstH2I	RGCGCY	1 cut(s)	92
BstHHI	GCGC	1 cut(s)	91
BstKTI	GATC	1 cut(s)	223
BstMBI	GATC	1 cut(s)	220
BstMWI	GCNNNNNNNGC	1 cut(s)	60
BstNI	CCWGG	1 cut(s)	15
BstSCI	CCNGG	1 cut(s)	13
BstUI	CGCG	1 cut(s)	42
BstV1I	GCAGC	3 cut(s)	78, 214, 217
BstX2I	RGATCY	1 cut(s)	220
BstYI	RGATCY	1 cut(s)	220
BsuRI	GGCC	4 cut(s)	54, 169, 260, 323
BtsI	GCAGTG	1 cut(s)	198
BtsIMutI	CAGTG	3 cut(s)	137, 138, 198
BtuMI	TCGCGA	1 cut(s)	42
Cac8I	GCNNGC	1 cut(s)	325
CaiI	CAGNNNCTG	1 cut(s)	230
CfoI	GCGC	1 cut(s)	91
Cfr10I	RCCGGY	2 cut(s)	7, 54
Cfr13I	GGNCC	3 cut(s)	112, 167, 288
CseI	GACGC	1 cut(s)	63
CviAII	CATG	1 cut(s)	78
CviJI	RGCY	8 cut(s)	54, 169, 227, 252, 260, 309, 323, 327
CviKI_1	RGCY	8 cut(s)	54, 169, 227, 252, 260, 309, 323, 327
DdeI	CTNAG	1 cut(s)	239
DpnI	GATC	1 cut(s)	222
DpnII	GATC	1 cut(s)	220
DrdI	GACNNNNNNGTC	1 cut(s)	73
DseDI	GACNNNNNNGTC	1 cut(s)	73
EaeI	YGGCCR	3 cut(s)	52, 258, 321
Eam1104I	CTCTTC	2 cut(s)	102, 259
EarI	CTCTTC	2 cut(s)	102, 259
Eco47I	GGWCC	2 cut(s)	112, 288
Eco47III	AGCGCT	1 cut(s)	90
EcoO109I	RGGNCCY	1 cut(s)	167
EcoRII	CCWGG	1 cut(s)	13
FaeI	CATG	1 cut(s)	81
FaiI	YATR	3 cut(s)	61, 79, 336
FalI	AAGNNNNNCTT	2 cut(s)	78, 110
FatI	CATG	1 cut(s)	77
FauI	CCCGC	1 cut(s)	378
Fnu4HI	GCNGC	3 cut(s)	92, 228, 231
Fsp4HI	GCNGC	3 cut(s)	92, 228, 231
FspBI	CTAG	1 cut(s)	171
GlaI	GCGC	1 cut(s)	90
GluI	GCNGC	3 cut(s)	92, 228, 231
HaeII	RGCGCY	1 cut(s)	92
HaeIII	GGCC	4 cut(s)	54, 169, 260, 323
HapII	CCGG	3 cut(s)	8, 55, 306
HgaI	GACGC	1 cut(s)	63
HhaI	GCGC	1 cut(s)	91
Hin1II	CATG	1 cut(s)	81
Hin6I	GCGC	1 cut(s)	89
HinP1I	GCGC	1 cut(s)	89
HinfI	GANTC	2 cut(s)	37, 316
HpaII	CCGG	3 cut(s)	8, 55, 306
HphI	GGTGA	1 cut(s)	193
Hpy188I	TCNGA	2 cut(s)	242, 292
Hpy188III	TCNNGA	3 cut(s)	41, 271, 313
Hpy99I	CGWCG	1 cut(s)	217
HpyAV	CCTTC	2 cut(s)	38, 155
HpyCH4V	TGCA	2 cut(s)	4, 233
HpyF10VI	GCNNNNNNNGC	1 cut(s)	60
HpyF3I	CTNAG	1 cut(s)	239
Hsp92II	CATG	1 cut(s)	81
HspAI	GCGC	1 cut(s)	89
Kzo9I	GATC	1 cut(s)	220
LguI	GCTCTTC	1 cut(s)	259
LpnPI	CCDG	9 cut(s)	21, 27, 68, 84, 143, 237, 305, 319, 337
Lsp1109I	GCAGC	3 cut(s)	78, 214, 217
LweI	GCATC	1 cut(s)	111
MaeI	CTAG	1 cut(s)	171
MaeIII	GTNAC	2 cut(s)	34, 181
MalI	GATC	1 cut(s)	222
MboI	GATC	1 cut(s)	220
MboII	GAAGA	5 cut(s)	116, 119, 246, 357, 360
MflI	RGATCY	1 cut(s)	220
MlsI	TGGCCA	1 cut(s)	323
MluCI	AATT	2 cut(s)	274, 349
MluNI	TGGCCA	1 cut(s)	323
MlyI	GAGTC	1 cut(s)	31
MnlI	CCTC	8 cut(s)	20, 91, 103, 146, 157, 338, 349, 388
Mox20I	TGGCCA	1 cut(s)	323
MscI	TGGCCA	1 cut(s)	323
MseI	TTAA	1 cut(s)	378
Msp20I	TGGCCA	1 cut(s)	323
MspA1I	CMGCKG	1 cut(s)	227
MspI	CCGG	3 cut(s)	8, 55, 306
MspR9I	CCNGG	1 cut(s)	15
MvaI	CCWGG	1 cut(s)	15
MvnI	CGCG	1 cut(s)	42
MwoI	GCNNNNNNNGC	1 cut(s)	60
NdeII	GATC	1 cut(s)	220
NlaIII	CATG	1 cut(s)	81
NlaIV	GGNNCC	3 cut(s)	12, 168, 289
NmuCI	GTSAC	2 cut(s)	34, 181
NruI	TCGCGA	1 cut(s)	42
NspV	TTCGAA	1 cut(s)	206
PciSI	GCTCTTC	1 cut(s)	259
PcsI	WCGNNNNNNNCGW	3 cut(s)	71, 182, 212
PfeI	GAWTC	1 cut(s)	316
PkrI	GCNGC	3 cut(s)	93, 229, 232
PleI	GAGTC	1 cut(s)	31
PpsI	GAGTC	1 cut(s)	31
Psp6I	CCWGG	1 cut(s)	13
PspGI	CCWGG	1 cut(s)	13
PspN4I	GGNNCC	3 cut(s)	12, 168, 289
PspPI	GGNCC	3 cut(s)	112, 167, 288
PstNI	CAGNNNCTG	1 cut(s)	230
PsuI	RGATCY	1 cut(s)	220
PvuII	CAGCTG	1 cut(s)	227
RruI	TCGCGA	1 cut(s)	42
SapI	GCTCTTC	1 cut(s)	259
SaqAI	TTAA	1 cut(s)	378
SatI	GCNGC	3 cut(s)	92, 228, 231
Sau3AI	GATC	1 cut(s)	220
Sau96I	GGNCC	3 cut(s)	112, 167, 288
SchI	GAGTC	1 cut(s)	31
ScrFI	CCNGG	1 cut(s)	15
SetI	ASST	5 cut(s)	16, 147, 229, 254, 399
SfaNI	GCATC	1 cut(s)	111
SfuI	TTCGAA	1 cut(s)	206
SinI	GGWCC	2 cut(s)	112, 288
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
Sse9I	AATT	2 cut(s)	274, 349
SsiI	CCGC	1 cut(s)	385
SspMI	CTAG	1 cut(s)	171
StyD4I	CCNGG	1 cut(s)	13
TaqI	TCGA	6 cut(s)	65, 176, 206, 270, 312, 330
TasI	AATT	2 cut(s)	274, 349
TfiI	GAWTC	1 cut(s)	316
Tru1I	TTAA	1 cut(s)	378
Tru9I	TTAA	1 cut(s)	378
TscAI	CASTG	3 cut(s)	137, 145, 198
TseFI	GTSAC	2 cut(s)	34, 181
TseI	GCWGC	3 cut(s)	91, 227, 230
Tsp45I	GTSAC	2 cut(s)	34, 181
TspRI	CASTG	3 cut(s)	137, 145, 198
VpaK11BI	GGWCC	2 cut(s)	112, 288
XapI	RAATTY	2 cut(s)	274, 349
XspI	CTAG	1 cut(s)	171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.