Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0004308

Physical Location & Seq

Genomic Coordinates Forward (+)

18996763 .. 19000740

Gene Structure 3978 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g18940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGCAACGGGCAGCCGGCAGAAGCAGCGGCGGTGAAGTGAGCCAAGGAGGAAGCGGACTCGGGCGGTACAGCTCGGCCCCAGCCACATGGTTAGAAGCGCTGCTTGAAGAGGACGAGGAGGACCCACTGAAGCCGACACAGTGCTTGACTGAGCTTCTTGCCGGCAACACGCCTTGTACGACGGTGGATCCAGCTTCGTATGATGGTGCAGCTGGGTACCTTAGTCGACAGAAAAGCTCACCGGCTGATTTTAATGGCAGCGGCGGGGAGTCGGGGGGATATTTCGCCGGGTTTGGAATTCCGGCCCACCTCGACTTTGTGTCGTCGTCGTCGTCGTTGTCCCCAAACAGCCCTTCTTCCTCTGCTAATAAGAGGGTTCGGGAGCAACAGCAACACCACTTTTCCTCCGACACACATGTGAAAGTGGAGGAAGGAGGATTGGAGGATTCGGTGGGTTGCAGGGTGAGGGCCAAGCGTGGTTGTGCTACGCATCCCAGGAGCATTGCTGAAAGGGTCAGGAGGACTAAGATCAGTGATCGCATAAGGAAGCTTCAAGAGCTTGTGCCCAACATGGATAAGCAAACTAATACTGCCGATATGTTAGACGAGGCAGTGGAGTATGTGAAGTTTCTTCAGAAGCAGATTCAGGAACTTTCGGAGCATCAGCGCAGGTGCAAATGCATAGCTAAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0042335 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

232

Amino Acids

25.08

Weight (kDa)

6.33

Isoelectric Point (pI)

55.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	167 - 212	1.5e-09	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	170 - 215	8.6e-07	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35460 AT1G35460 AT4G09180
fragaria_vesca	FvH4_5g31910 FvH4_5g31910 FvH4_5g31910
malus_domestica	MD08G1218800.v1.1 MD15G1407200.v1.1
prunus_persica	Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1
pyrus_communis	pycom08g18940 pycom15g36340
rosa_chinensis	RchiOBHm_Chr7g0227911
rosa_laevigata	RLG00000001604
rosa_multiflora	Rmu_co8004144.1_g000001 Rmu_sc0007737.1_g000003
rosa_roxburghii	Rroxscaffold_3G00231770
rosa_rugosa	Rorug07G0244500.1
rosa_samantha	Rh1CG340400 Rh1DG357700 Rh7AG397700 Rh7BG379200 Rh7CG415900 Rh7DG393200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	660
Acc36I	ACCTGC	1 cut(s)	660
Acc65I	GGTACC	1 cut(s)	216
AccB1I	GGYRCC	1 cut(s)	216
AccI	GTMKAC	1 cut(s)	226
AciI	CCGC	6 cut(s)	27, 30, 54, 64, 261, 264
AclWI	GGATC	2 cut(s)	182, 195
AcsI	RAATTY	1 cut(s)	297
AcuI	CTGAAG	2 cut(s)	149, 617
AfaI	GTAC	3 cut(s)	68, 178, 218
AfeI	AGCGCT	1 cut(s)	99
AflIII	ACRYGT	1 cut(s)	415
AgsI	TTSAA	2 cut(s)	107, 554
AhdI	GACNNNNNGTC	1 cut(s)	319
AjnI	CCWGG	1 cut(s)	494
AjuI	GAANNNNNNNTTGG	2 cut(s)	337, 369
AleI	CACNNNNGTG	1 cut(s)	416
AluBI	AGCT	8 cut(s)	72, 154, 194, 212, 237, 550, 559, 686
AluI	AGCT	8 cut(s)	72, 154, 194, 212, 237, 550, 559, 686
AlwI	GGATC	2 cut(s)	182, 195
Ama87I	CYCGRG	1 cut(s)	59
Aor51HI	AGCGCT	1 cut(s)	99
AoxI	GGCC	3 cut(s)	75, 303, 468
ApeKI	GCWGC	5 cut(s)	11, 24, 100, 209, 258
ApoI	RAATTY	1 cut(s)	297
Asp718I	GGTACC	1 cut(s)	216
AspLEI	GCGC	2 cut(s)	100, 669
AspS9I	GGNCC	4 cut(s)	76, 121, 304, 468
AsuC2I	CCSGG	1 cut(s)	289
AsuHPI	GGTGA	3 cut(s)	44, 231, 475
AvaI	CYCGRG	1 cut(s)	59
AvaII	GGWCC	1 cut(s)	121
BaeGI	GKGCMC	1 cut(s)	567
BaeI	ACNNNNGTAYC	2 cut(s)	208, 241
BamHI	GGATCC	1 cut(s)	187
BanI	GGYRCC	1 cut(s)	216
BbvI	GCAGC	5 cut(s)	23, 36, 87, 221, 270
BccI	CCATC	1 cut(s)	197
BciT130I	CCWGG	1 cut(s)	496
BcnI	CCSGG	1 cut(s)	289
BfoI	RGCGCY	1 cut(s)	101
BfuAI	ACCTGC	1 cut(s)	660
BisI	GCNGC	7 cut(s)	12, 25, 28, 101, 210, 259, 262
BlsI	GCNGC	7 cut(s)	13, 26, 29, 102, 211, 260, 263
Bme1390I	CCNGG	2 cut(s)	289, 496
Bme18I	GGWCC	1 cut(s)	121
BmeRI	GACNNNNNGTC	1 cut(s)	319
BmeT110I	CYCGRG	1 cut(s)	59
BmgT120I	GGNCC	4 cut(s)	76, 121, 304, 468
BmiI	GGNNCC	4 cut(s)	78, 123, 189, 218
BmrFI	CCNGG	2 cut(s)	289, 496
BmsI	GCATC	2 cut(s)	499, 670
BpuMI	CCSGG	1 cut(s)	289
BsaJI	CCNNGG	2 cut(s)	43, 494
BsaXI	ACNNNNNCTCC	2 cut(s)	389, 419
Bse118I	RCCGGY	3 cut(s)	14, 161, 241
Bse3DI	GCAATG	1 cut(s)	501
BseBI	CCWGG	1 cut(s)	496
BseDI	CCNNGG	2 cut(s)	43, 494
BseGI	GGATG	1 cut(s)	490
BseMI	GCAATG	1 cut(s)	501
BseMII	CTCAG	1 cut(s)	141
BseRI	GAGGAG	1 cut(s)	131
BseSI	GKGCMC	1 cut(s)	567
BseXI	GCAGC	5 cut(s)	23, 36, 87, 221, 270
BseYI	CCCAGC	2 cut(s)	79, 212
BsgI	GTGCAG	1 cut(s)	228
BshFI	GGCC	3 cut(s)	77, 305, 470
BshNI	GGYRCC	1 cut(s)	216
BsiHKCI	CYCGRG	1 cut(s)	59
BsiSI	CCGG	5 cut(s)	15, 162, 242, 288, 302
BslFI	GGGAC	1 cut(s)	325
BsmFI	GGGAC	1 cut(s)	325
BsnI	GGCC	3 cut(s)	77, 305, 470
BsoBI	CYCGRG	1 cut(s)	59
Bsp1286I	GDGCHC	1 cut(s)	567
Bsp143I	GATC	3 cut(s)	187, 528, 535
BspACI	CCGC	6 cut(s)	27, 30, 54, 64, 261, 264
BspANI	GGCC	3 cut(s)	77, 305, 470
BspCNI	CTCAG	1 cut(s)	142
BspLI	GGNNCC	4 cut(s)	78, 123, 189, 218
BspMI	ACCTGC	1 cut(s)	660
BspPI	GGATC	2 cut(s)	182, 195
BspT107I	GGYRCC	1 cut(s)	216
BsrDI	GCAATG	1 cut(s)	501
BsrFI	RCCGGY	3 cut(s)	14, 161, 241
BssAI	RCCGGY	3 cut(s)	14, 161, 241
BssECI	CCNNGG	2 cut(s)	43, 494
BssMI	GATC	3 cut(s)	187, 528, 535
BssT1I	CCWWGG	1 cut(s)	43
Bst2UI	CCWGG	1 cut(s)	496
Bst4CI	ACNGT	2 cut(s)	141, 184
Bst6I	CTCTTC	1 cut(s)	102
BstC8I	GCNNGC	2 cut(s)	16, 163
BstDEI	CTNAG	3 cut(s)	150, 221, 525
BstF5I	GGATG	1 cut(s)	490
BstH2I	RGCGCY	1 cut(s)	101
BstHHI	GCGC	2 cut(s)	100, 669
BstKTI	GATC	3 cut(s)	190, 531, 538
BstMBI	GATC	3 cut(s)	187, 528, 535
BstMWI	GCNNNNNNNGC	2 cut(s)	24, 556
BstNI	CCWGG	1 cut(s)	496
BstNSI	RCATGY	1 cut(s)	419
BstSCI	CCNGG	2 cut(s)	287, 494
BstSLI	GKGCMC	1 cut(s)	567
BstV1I	GCAGC	5 cut(s)	23, 36, 87, 221, 270
BstX2I	RGATCY	1 cut(s)	187
BstXI	CCANNNNNNTGG	1 cut(s)	87
BstYI	RGATCY	1 cut(s)	187
BsuRI	GGCC	3 cut(s)	77, 305, 470
BtsCI	GGATG	1 cut(s)	490
BtsI	GCAGTG	1 cut(s)	618
BtsIMutI	CAGTG	4 cut(s)	125, 146, 538, 618
BveI	ACCTGC	1 cut(s)	660
Cac8I	GCNNGC	2 cut(s)	16, 163
CfoI	GCGC	2 cut(s)	100, 669
Cfr10I	RCCGGY	3 cut(s)	14, 161, 241
Cfr13I	GGNCC	4 cut(s)	76, 121, 304, 468
Csp6I	GTAC	3 cut(s)	67, 177, 217
CviAII	CATG	3 cut(s)	87, 416, 571
CviQI	GTAC	3 cut(s)	67, 177, 217
DdeI	CTNAG	3 cut(s)	150, 221, 525
DpnI	GATC	3 cut(s)	189, 530, 537
DpnII	GATC	3 cut(s)	187, 528, 535
DriI	GACNNNNNGTC	1 cut(s)	319
Eam1104I	CTCTTC	1 cut(s)	102
Eam1105I	GACNNNNNGTC	1 cut(s)	319
EarI	CTCTTC	1 cut(s)	102
Eco130I	CCWWGG	1 cut(s)	43
Eco47I	GGWCC	1 cut(s)	121
Eco47III	AGCGCT	1 cut(s)	99
Eco57I	CTGAAG	2 cut(s)	149, 617
Eco88I	CYCGRG	1 cut(s)	59
EcoO109I	RGGNCCY	1 cut(s)	121
EcoRI	GAATTC	1 cut(s)	297
EcoRII	CCWGG	1 cut(s)	494
EcoT14I	CCWWGG	1 cut(s)	43
EcoT22I	ATGCAT	1 cut(s)	683
ErhI	CCWWGG	1 cut(s)	43
FaeI	CATG	3 cut(s)	90, 419, 574
FaiI	YATR	8 cut(s)	88, 201, 417, 542, 572, 599, 621, 683
FalI	AAGNNNNNCTT	2 cut(s)	87, 119
FaqI	GGGAC	1 cut(s)	325
FatI	CATG	3 cut(s)	86, 415, 570
FauI	CCCGC	1 cut(s)	257
FblI	GTMKAC	1 cut(s)	226
Fnu4HI	GCNGC	7 cut(s)	12, 25, 28, 101, 210, 259, 262
FokI	GGATG	1 cut(s)	477
Fsp4HI	GCNGC	7 cut(s)	12, 25, 28, 101, 210, 259, 262
GlaI	GCGC	2 cut(s)	99, 668
GluI	GCNGC	7 cut(s)	12, 25, 28, 101, 210, 259, 262
GsaI	CCCAGC	2 cut(s)	83, 216
HaeII	RGCGCY	1 cut(s)	101
HaeIII	GGCC	3 cut(s)	77, 305, 470
HapII	CCGG	5 cut(s)	15, 162, 242, 288, 302
HhaI	GCGC	2 cut(s)	100, 669
Hin1II	CATG	3 cut(s)	90, 419, 574
Hin6I	GCGC	2 cut(s)	98, 667
HinP1I	GCGC	2 cut(s)	98, 667
HincII	GTYRAC	1 cut(s)	227
HindII	GTYRAC	1 cut(s)	227
HindIII	AAGCTT	1 cut(s)	548
HinfI	GANTC	4 cut(s)	57, 269, 446, 643
HpaII	CCGG	5 cut(s)	15, 162, 242, 288, 302
HphI	GGTGA	3 cut(s)	44, 231, 475
Hpy166II	GTNNAC	1 cut(s)	227
Hpy188I	TCNGA	3 cut(s)	409, 636, 658
Hpy188III	TCNNGA	4 cut(s)	380, 517, 554, 647
Hpy8I	GTNNAC	1 cut(s)	227
Hpy99I	CGWCG	5 cut(s)	184, 328, 331, 334, 337
HpyAV	CCTTC	2 cut(s)	363, 425
HpyCH4III	ACNGT	2 cut(s)	141, 184
HpyCH4V	TGCA	5 cut(s)	4, 209, 459, 675, 681
HpyF10VI	GCNNNNNNNGC	2 cut(s)	24, 556
HpyF3I	CTNAG	3 cut(s)	150, 221, 525
Hsp92II	CATG	3 cut(s)	90, 419, 574
HspAI	GCGC	2 cut(s)	98, 667
KpnI	GGTACC	1 cut(s)	220
KroI	GCCGGC	2 cut(s)	14, 161
KroNI	GCCGGC	2 cut(s)	16, 163
Kzo9I	GATC	3 cut(s)	187, 528, 535
LmnI	GCTCC	3 cut(s)	382, 498, 658
Lsp1109I	GCAGC	5 cut(s)	23, 36, 87, 221, 270
LweI	GCATC	2 cut(s)	499, 670
MalI	GATC	3 cut(s)	189, 530, 537
MboI	GATC	3 cut(s)	187, 528, 535
MboII	GAAGA	3 cut(s)	119, 348, 623
MflI	RGATCY	1 cut(s)	187
MhlI	GDGCHC	1 cut(s)	567
MluCI	AATT	1 cut(s)	297
MlyI	GAGTC	2 cut(s)	51, 278
MmeI	TCCRAC	1 cut(s)	432
Mph1103I	ATGCAT	1 cut(s)	683
MroNI	GCCGGC	2 cut(s)	14, 161
MseI	TTAA	1 cut(s)	252
MslI	CAYNNNNRTG	1 cut(s)	416
MspA1I	CMGCKG	3 cut(s)	27, 212, 261
MspI	CCGG	5 cut(s)	15, 162, 242, 288, 302
MspR9I	CCNGG	2 cut(s)	289, 496
MvaI	CCWGG	1 cut(s)	496
MwoI	GCNNNNNNNGC	2 cut(s)	24, 556
NaeI	GCCGGC	2 cut(s)	16, 163
NciI	CCSGG	1 cut(s)	289
NdeII	GATC	3 cut(s)	187, 528, 535
NgoMIV	GCCGGC	2 cut(s)	14, 161
NlaIII	CATG	3 cut(s)	90, 419, 574
NlaIV	GGNNCC	4 cut(s)	78, 123, 189, 218
NmeAIII	GCCGAG	1 cut(s)	53
NsiI	ATGCAT	1 cut(s)	683
NspI	RCATGY	1 cut(s)	419
OliI	CACNNNNGTG	1 cut(s)	416
PaqCI	CACCTGC	1 cut(s)	660
PciI	ACATGT	1 cut(s)	415
PcsI	WCGNNNNNNNCGW	3 cut(s)	176, 329, 332
PdiI	GCCGGC	2 cut(s)	16, 163
PfeI	GAWTC	2 cut(s)	446, 643
PkrI	GCNGC	7 cut(s)	13, 26, 29, 102, 211, 260, 263
PleI	GAGTC	2 cut(s)	51, 277
PpsI	GAGTC	2 cut(s)	51, 277
PpuMI	RGGWCCY	1 cut(s)	121
PscI	ACATGT	1 cut(s)	415
Psp5II	RGGWCCY	1 cut(s)	121
Psp6I	CCWGG	1 cut(s)	494
PspFI	CCCAGC	2 cut(s)	79, 212
PspGI	CCWGG	1 cut(s)	494
PspN4I	GGNNCC	4 cut(s)	78, 123, 189, 218
PspPI	GGNCC	4 cut(s)	76, 121, 304, 468
PspPPI	RGGWCCY	1 cut(s)	121
PsuI	RGATCY	1 cut(s)	187
PvuII	CAGCTG	1 cut(s)	212
RsaI	GTAC	3 cut(s)	68, 178, 218
RsaNI	GTAC	3 cut(s)	67, 177, 217
RseI	CAYNNNNRTG	1 cut(s)	416
SalI	GTCGAC	1 cut(s)	225
SaqAI	TTAA	1 cut(s)	252
SatI	GCNGC	7 cut(s)	12, 25, 28, 101, 210, 259, 262
Sau3AI	GATC	3 cut(s)	187, 528, 535
Sau96I	GGNCC	4 cut(s)	76, 121, 304, 468
SchI	GAGTC	2 cut(s)	51, 278
ScrFI	CCNGG	2 cut(s)	289, 496
SduI	GDGCHC	1 cut(s)	567
SfaNI	GCATC	2 cut(s)	499, 670
SinI	GGWCC	1 cut(s)	121
SmiMI	CAYNNNNRTG	1 cut(s)	416
Sse9I	AATT	1 cut(s)	297
SsiI	CCGC	6 cut(s)	27, 30, 54, 64, 261, 264
StyD4I	CCNGG	2 cut(s)	287, 494
StyI	CCWWGG	1 cut(s)	43
TaaI	ACNGT	2 cut(s)	141, 184
TaqI	TCGA	2 cut(s)	226, 312
TasI	AATT	1 cut(s)	297
TauI	GCSGC	2 cut(s)	30, 264
TfiI	GAWTC	2 cut(s)	446, 643
Tru1I	TTAA	1 cut(s)	252
Tru9I	TTAA	1 cut(s)	252
TscAI	CASTG	4 cut(s)	132, 146, 538, 618
TseI	GCWGC	5 cut(s)	11, 24, 100, 209, 258
TspRI	CASTG	4 cut(s)	132, 146, 538, 618
VpaK11BI	GGWCC	1 cut(s)	121
XapI	RAATTY	1 cut(s)	297
XceI	RCATGY	1 cut(s)	419
XmiI	GTMKAC	1 cut(s)	226
Zsp2I	ATGCAT	1 cut(s)	683

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.