Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0004308

Physical Location & Seq

Genomic Coordinates Forward (+)

53634826 .. 53640743

Gene Structure 5918 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG415900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGAAGGTACAGATGCGGCCGCAGAGGCAGGGAATCAGGTCCCGGATTTCCTTGATTTGGCGCAACATAGCTCAGACAAGAGAACAAAAGATCAGAGTAGACTCCTTCTCTCTTCTACACTTGAAGCGAAAATCTCCGTGCAAATCAACGAGGAAAACTCGCAGGTGGCCGGCGGGGACGAGGCAGATGCAACCGGCACCTGGCGAAAGTGGAGGAGAAGTGACTCGCGGAGGTGGAGGACTCGGCCGGTTCTGCTCGGCCCCGGCGTCATGGTTGGAAGCGTTGCTTGAGGACGAAGAAGAGGACCCTTTGAAGCCCACCCAGTGCCTCACCGACCTTCTTGCCGATAACTGCGAGGGGCCCAGTTCGACGGCAGTGGGGTTCGGTTCGGATACGACGGCGGATCCAGCTGCGGCGTTTCTCAGACAGAACAGCTCTCCGGCCGACTTTGTCGGGAATTCGAGTGATGGGTCCGAAGGGTATTTCTCCGGGTTCGGGATTCCGACCAGCCTCGACTATGTCTCGAACCCGAATTTCAGTAATGTTTCTTCTTCTTCGGCTAATAAGCGGGTTAGGGAGGTGAAAATGGAGGAAGGTGGATTCGAGGAGTCAGGGACTCTGAGGGTTAGGGCAAAGCGAGGTTGTGCTACTCATCCAAGGAGTATTGCTGAAAGGGTCAGGAGGACTCGAATTAGTGACCGGATAAGGAAGCTTCAGGAGCTTGTACCCAACATGGATAAGGTTAGAGCTTCCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0042335 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

252

Amino Acids

27.75

Weight (kDa)

9.81

Isoelectric Point (pI)

54.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35460 AT1G35460 AT4G09180
fragaria_vesca	FvH4_5g31910 FvH4_5g31910 FvH4_5g31910
malus_domestica	MD08G1218800.v1.1 MD15G1407200.v1.1
prunus_persica	Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1
pyrus_communis	pycom08g18940 pycom15g36340
rosa_chinensis	RchiOBHm_Chr7g0227911
rosa_laevigata	RLG00000001604
rosa_multiflora	Rmu_co8004144.1_g000001 Rmu_sc0007737.1_g000003
rosa_roxburghii	Rroxscaffold_3G00231770
rosa_rugosa	Rorug07G0244500.1
rosa_samantha	Rh1CG340400 Rh1DG357700 Rh7AG397700 Rh7BG379200 Rh7CG415900 Rh7DG393200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	153
Acc36I	ACCTGC	1 cut(s)	153
AccB1I	GGYRCC	1 cut(s)	196
AccI	GTMKAC	1 cut(s)	99
AccII	CGCG	1 cut(s)	228
AciI	CCGC	7 cut(s)	16, 20, 173, 228, 401, 413, 568
AclWI	GGATC	2 cut(s)	398, 411
AcoI	YGGCCR	4 cut(s)	17, 167, 244, 441
AcsI	RAATTY	2 cut(s)	457, 532
AcuI	CTGAAG	1 cut(s)	698
AcyI	GRCGYC	1 cut(s)	266
AdeI	CACNNNGTG	1 cut(s)	324
AfaI	GTAC	2 cut(s)	9, 726
AfiI	CCNNNNNNNGG	3 cut(s)	57, 200, 495
AgsI	TTSAA	2 cut(s)	124, 313
AjnI	CCWGG	1 cut(s)	199
AluBI	AGCT	6 cut(s)	71, 410, 435, 712, 721, 749
AluI	AGCT	6 cut(s)	71, 410, 435, 712, 721, 749
Alw26I	GTCTC	1 cut(s)	526
AlwI	GGATC	2 cut(s)	398, 411
AoxI	GGCC	6 cut(s)	17, 167, 244, 258, 359, 441
ApaI	GGGCCC	1 cut(s)	363
ApeKI	GCWGC	1 cut(s)	410
ApoI	RAATTY	2 cut(s)	457, 532
AspLEI	GCGC	1 cut(s)	63
AspS9I	GGNCC	6 cut(s)	39, 259, 304, 359, 360, 471
AsuC2I	CCSGG	3 cut(s)	43, 263, 490
AsuHPI	GGTGA	2 cut(s)	322, 592
AvaII	GGWCC	3 cut(s)	39, 304, 471
BaeGI	GKGCMC	1 cut(s)	363
BamHI	GGATCC	1 cut(s)	403
BanI	GGYRCC	1 cut(s)	196
BanII	GRGCYC	1 cut(s)	363
BarI	GAAGNNNNNNTAC	2 cut(s)	532, 564
BbvI	GCAGC	1 cut(s)	397
BccI	CCATC	1 cut(s)	461
BceAI	ACGGC	2 cut(s)	387, 414
BcgI	CGANNNNNNTGC	4 cut(s)	169, 203, 323, 357
BciT130I	CCWGG	1 cut(s)	201
BciVI	GTATCC	1 cut(s)	385
BcnI	CCSGG	3 cut(s)	43, 263, 490
BcoDI	GTCTC	1 cut(s)	526
BfuAI	ACCTGC	1 cut(s)	153
BfuI	GTATCC	1 cut(s)	385
BglI	GCCNNNNNGGC	1 cut(s)	25
BisI	GCNGC	4 cut(s)	17, 20, 411, 414
BlsI	GCNGC	4 cut(s)	18, 21, 412, 415
Bme1390I	CCNGG	4 cut(s)	43, 201, 263, 490
Bme18I	GGWCC	3 cut(s)	39, 304, 471
BmgT120I	GGNCC	6 cut(s)	39, 259, 304, 359, 360, 471
BmiI	GGNNCC	8 cut(s)	41, 198, 261, 306, 360, 361, 405, 472
BmrFI	CCNGG	4 cut(s)	43, 201, 263, 490
BmrI	ACTGGG	2 cut(s)	316, 357
BmsI	GCATC	2 cut(s)	3, 177
BmuI	ACTGGG	2 cut(s)	316, 357
BplI	GAGNNNNNCTC	2 cut(s)	142, 174
BpuEI	CTTGAG	1 cut(s)	308
BpuMI	CCSGG	3 cut(s)	43, 263, 490
BsaHI	GRCGYC	1 cut(s)	266
BsaJI	CCNNGG	2 cut(s)	261, 656
BsaWI	WCCGGW	1 cut(s)	699
BsaXI	ACNNNNNCTCC	2 cut(s)	204, 234
Bsc4I	CCNNNNNNNGG	3 cut(s)	57, 200, 495
Bse118I	RCCGGY	3 cut(s)	169, 193, 246
Bse1I	ACTGG	2 cut(s)	322, 363
BseBI	CCWGG	1 cut(s)	201
BseDI	CCNNGG	2 cut(s)	261, 656
BseGI	GGATG	1 cut(s)	652
BseLI	CCNNNNNNNGG	3 cut(s)	57, 200, 495
BseMII	CTCAG	3 cut(s)	86, 436, 611
BseNI	ACTGG	2 cut(s)	322, 363
BseRI	GAGGAG	2 cut(s)	228, 620
BseSI	GKGCMC	1 cut(s)	363
BseX3I	CGGCCG	3 cut(s)	17, 244, 441
BseXI	GCAGC	1 cut(s)	397
Bsh1236I	CGCG	1 cut(s)	228
Bsh1285I	CGRYCG	3 cut(s)	20, 247, 444
BshFI	GGCC	6 cut(s)	19, 169, 246, 260, 361, 443
BshNI	GGYRCC	1 cut(s)	196
BsiEI	CGRYCG	3 cut(s)	20, 247, 444
BsiSI	CCGG	8 cut(s)	43, 170, 194, 247, 263, 440, 489, 700
BslFI	GGGAC	3 cut(s)	25, 190, 628
BslI	CCNNNNNNNGG	3 cut(s)	57, 200, 495
BsmAI	GTCTC	1 cut(s)	526
BsmFI	GGGAC	3 cut(s)	25, 190, 628
BsnI	GGCC	6 cut(s)	19, 169, 246, 260, 361, 443
Bsp120I	GGGCCC	1 cut(s)	359
Bsp1286I	GDGCHC	1 cut(s)	363
Bsp143I	GATC	2 cut(s)	90, 403
BspACI	CCGC	7 cut(s)	16, 20, 173, 228, 401, 413, 568
BspANI	GGCC	6 cut(s)	19, 169, 246, 260, 361, 443
BspCNI	CTCAG	3 cut(s)	85, 435, 612
BspFNI	CGCG	1 cut(s)	228
BspLI	GGNNCC	8 cut(s)	41, 198, 261, 306, 360, 361, 405, 472
BspMI	ACCTGC	1 cut(s)	153
BspPI	GGATC	2 cut(s)	398, 411
BspT107I	GGYRCC	1 cut(s)	196
BsrFI	RCCGGY	3 cut(s)	169, 193, 246
BsrI	ACTGG	2 cut(s)	322, 363
BssAI	RCCGGY	3 cut(s)	169, 193, 246
BssECI	CCNNGG	2 cut(s)	261, 656
BssMI	GATC	2 cut(s)	90, 403
BssNI	GRCGYC	1 cut(s)	266
BssT1I	CCWWGG	1 cut(s)	656
Bst2UI	CCWGG	1 cut(s)	201
Bst6I	CTCTTC	2 cut(s)	117, 294
BstACI	GRCGYC	1 cut(s)	266
BstC8I	GCNNGC	1 cut(s)	171
BstDEI	CTNAG	3 cut(s)	72, 422, 620
BstF5I	GGATG	1 cut(s)	652
BstFNI	CGCG	1 cut(s)	228
BstHHI	GCGC	1 cut(s)	63
BstKTI	GATC	2 cut(s)	93, 406
BstMAI	GTCTC	1 cut(s)	526
BstMBI	GATC	2 cut(s)	90, 403
BstMCI	CGRYCG	3 cut(s)	20, 247, 444
BstMWI	GCNNNNNNNGC	4 cut(s)	25, 252, 407, 718
BstNI	CCWGG	1 cut(s)	201
BstSCI	CCNGG	4 cut(s)	41, 199, 261, 488
BstSLI	GKGCMC	1 cut(s)	363
BstUI	CGCG	1 cut(s)	228
BstV1I	GCAGC	1 cut(s)	397
BstX2I	RGATCY	1 cut(s)	403
BstYI	RGATCY	1 cut(s)	403
BstZI	CGGCCG	3 cut(s)	17, 244, 441
BsuI	GTATCC	1 cut(s)	385
BsuRI	GGCC	6 cut(s)	19, 169, 246, 260, 361, 443
BtsCI	GGATG	1 cut(s)	652
BtsI	GCAGTG	1 cut(s)	381
BtsIMutI	CAGTG	2 cut(s)	329, 381
BveI	ACCTGC	1 cut(s)	153
Cac8I	GCNNGC	1 cut(s)	171
CciNI	GCGGCCGC	1 cut(s)	17
CfoI	GCGC	1 cut(s)	63
Cfr10I	RCCGGY	3 cut(s)	169, 193, 246
Cfr13I	GGNCC	6 cut(s)	39, 259, 304, 359, 360, 471
CseI	GACGC	1 cut(s)	255
Csp6I	GTAC	2 cut(s)	8, 725
CviAII	CATG	2 cut(s)	270, 733
CviQI	GTAC	2 cut(s)	8, 725
DdeI	CTNAG	3 cut(s)	72, 422, 620
DpnI	GATC	2 cut(s)	92, 405
DpnII	GATC	2 cut(s)	90, 403
DraIII	CACNNNGTG	1 cut(s)	324
EaeI	YGGCCR	4 cut(s)	17, 167, 244, 441
EagI	CGGCCG	3 cut(s)	17, 244, 441
Eam1104I	CTCTTC	2 cut(s)	117, 294
EarI	CTCTTC	2 cut(s)	117, 294
EciI	GGCGGA	1 cut(s)	416
EclXI	CGGCCG	3 cut(s)	17, 244, 441
Eco130I	CCWWGG	1 cut(s)	656
Eco24I	GRGCYC	1 cut(s)	363
Eco47I	GGWCC	3 cut(s)	39, 304, 471
Eco52I	CGGCCG	3 cut(s)	17, 244, 441
Eco57I	CTGAAG	1 cut(s)	698
EcoO109I	RGGNCCY	3 cut(s)	39, 304, 359
EcoRI	GAATTC	1 cut(s)	457
EcoRII	CCWGG	1 cut(s)	199
EcoT14I	CCWWGG	1 cut(s)	656
EcoT38I	GRGCYC	1 cut(s)	363
ErhI	CCWWGG	1 cut(s)	656
FaeI	CATG	2 cut(s)	273, 736
FaiI	YATR	4 cut(s)	68, 271, 519, 734
FalI	AAGNNNNNCTT	2 cut(s)	270, 302
FaqI	GGGAC	3 cut(s)	25, 190, 628
FatI	CATG	2 cut(s)	269, 732
FauI	CCCGC	2 cut(s)	166, 561
FblI	GTMKAC	1 cut(s)	99
Fnu4HI	GCNGC	4 cut(s)	17, 20, 411, 414
FokI	GGATG	1 cut(s)	639
FriOI	GRGCYC	1 cut(s)	363
Fsp4HI	GCNGC	4 cut(s)	17, 20, 411, 414
GlaI	GCGC	1 cut(s)	62
GluI	GCNGC	4 cut(s)	17, 20, 411, 414
HaeIII	GGCC	6 cut(s)	19, 169, 246, 260, 361, 443
HapII	CCGG	8 cut(s)	43, 170, 194, 247, 263, 440, 489, 700
HgaI	GACGC	1 cut(s)	255
HhaI	GCGC	1 cut(s)	63
Hin1I	GRCGYC	1 cut(s)	266
Hin1II	CATG	2 cut(s)	273, 736
Hin6I	GCGC	1 cut(s)	61
HinP1I	GCGC	1 cut(s)	61
HindIII	AAGCTT	1 cut(s)	710
HinfI	GANTC	9 cut(s)	33, 101, 223, 240, 499, 600, 608, 616, 685
HpaII	CCGG	8 cut(s)	43, 170, 194, 247, 263, 440, 489, 700
HphI	GGTGA	2 cut(s)	322, 592
Hpy166II	GTNNAC	1 cut(s)	100
Hpy188I	TCNGA	7 cut(s)	75, 95, 391, 425, 475, 504, 621
Hpy188III	TCNNGA	5 cut(s)	454, 496, 523, 679, 716
Hpy8I	GTNNAC	1 cut(s)	100
Hpy99I	CGWCG	2 cut(s)	373, 400
HpyAV	CCTTC	4 cut(s)	115, 347, 470, 587
HpyCH4V	TGCA	2 cut(s)	141, 190
HpyF10VI	GCNNNNNNNGC	4 cut(s)	25, 252, 407, 718
HpyF3I	CTNAG	3 cut(s)	72, 422, 620
Hsp92I	GRCGYC	1 cut(s)	266
Hsp92II	CATG	2 cut(s)	273, 736
HspAI	GCGC	1 cut(s)	61
KroI	GCCGGC	1 cut(s)	169
KroNI	GCCGGC	1 cut(s)	171
Kzo9I	GATC	2 cut(s)	90, 403
LmnI	GCTCC	1 cut(s)	718
Lsp1109I	GCAGC	1 cut(s)	397
LweI	GCATC	2 cut(s)	3, 177
MaeIII	GTNAC	2 cut(s)	220, 695
MalI	GATC	2 cut(s)	92, 405
MboI	GATC	2 cut(s)	90, 403
MboII	GAAGA	6 cut(s)	104, 308, 311, 540, 543, 546
MflI	RGATCY	1 cut(s)	403
MhlI	GDGCHC	1 cut(s)	363
MluCI	AATT	3 cut(s)	457, 532, 690
MlyI	GAGTC	6 cut(s)	95, 217, 234, 610, 617, 679
MmeI	TCCRAC	2 cut(s)	255, 527
MroNI	GCCGGC	1 cut(s)	169
MspA1I	CMGCKG	1 cut(s)	410
MspI	CCGG	8 cut(s)	43, 170, 194, 247, 263, 440, 489, 700
MspR9I	CCNGG	4 cut(s)	43, 201, 263, 490
MvaI	CCWGG	1 cut(s)	201
MvnI	CGCG	1 cut(s)	228
MwoI	GCNNNNNNNGC	4 cut(s)	25, 252, 407, 718
NaeI	GCCGGC	1 cut(s)	171
NciI	CCSGG	3 cut(s)	43, 263, 490
NdeII	GATC	2 cut(s)	90, 403
NgoMIV	GCCGGC	1 cut(s)	169
NlaIII	CATG	2 cut(s)	273, 736
NlaIV	GGNNCC	8 cut(s)	41, 198, 261, 306, 360, 361, 405, 472
NmeAIII	GCCGAG	2 cut(s)	222, 236
NmuCI	GTSAC	2 cut(s)	220, 695
NotI	GCGGCCGC	1 cut(s)	17
PaqCI	CACCTGC	1 cut(s)	153
PcsI	WCGNNNNNNNCGW	1 cut(s)	263
PdiI	GCCGGC	1 cut(s)	171
PfeI	GAWTC	3 cut(s)	33, 499, 600
PflFI	GACNNNGTC	2 cut(s)	449, 518
PfoI	TCCNGGA	1 cut(s)	41
PkrI	GCNGC	4 cut(s)	18, 21, 412, 415
PleI	GAGTC	6 cut(s)	95, 217, 234, 610, 616, 679
PpsI	GAGTC	6 cut(s)	95, 217, 234, 610, 616, 679
PpuMI	RGGWCCY	2 cut(s)	39, 304
Psp5II	RGGWCCY	2 cut(s)	39, 304
Psp6I	CCWGG	1 cut(s)	199
PspGI	CCWGG	1 cut(s)	199
PspN4I	GGNNCC	8 cut(s)	41, 198, 261, 306, 360, 361, 405, 472
PspOMI	GGGCCC	1 cut(s)	359
PspPI	GGNCC	6 cut(s)	39, 259, 304, 359, 360, 471
PspPPI	RGGWCCY	2 cut(s)	39, 304
PsuI	RGATCY	1 cut(s)	403
PsyI	GACNNNGTC	2 cut(s)	449, 518
PvuII	CAGCTG	1 cut(s)	410
RsaI	GTAC	2 cut(s)	9, 726
RsaNI	GTAC	2 cut(s)	8, 725
SatI	GCNGC	4 cut(s)	17, 20, 411, 414
Sau3AI	GATC	2 cut(s)	90, 403
Sau96I	GGNCC	6 cut(s)	39, 259, 304, 359, 360, 471
SchI	GAGTC	6 cut(s)	95, 217, 234, 610, 617, 679
ScrFI	CCNGG	4 cut(s)	43, 201, 263, 490
SduI	GDGCHC	1 cut(s)	363
SfaNI	GCATC	2 cut(s)	3, 177
SinI	GGWCC	3 cut(s)	39, 304, 471
SmlI	CTYRAG	1 cut(s)	287
SmoI	CTYRAG	1 cut(s)	287
Sse9I	AATT	3 cut(s)	457, 532, 690
SsiI	CCGC	7 cut(s)	16, 20, 173, 228, 401, 413, 568
StyD4I	CCNGG	4 cut(s)	41, 199, 261, 488
StyI	CCWWGG	1 cut(s)	656
TaqI	TCGA	6 cut(s)	368, 461, 513, 524, 603, 688
TasI	AATT	3 cut(s)	457, 532, 690
TauI	GCSGC	3 cut(s)	19, 22, 416
TfiI	GAWTC	3 cut(s)	33, 499, 600
TscAI	CASTG	2 cut(s)	329, 381
TseFI	GTSAC	2 cut(s)	220, 695
TseI	GCWGC	1 cut(s)	410
Tsp45I	GTSAC	2 cut(s)	220, 695
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	126
TspRI	CASTG	2 cut(s)	329, 381
Tth111I	GACNNNGTC	2 cut(s)	449, 518
VpaK11BI	GGWCC	3 cut(s)	39, 304, 471
XapI	RAATTY	2 cut(s)	457, 532
XmiI	GTMKAC	1 cut(s)	99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.