Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0004308

Physical Location & Seq

Genomic Coordinates Forward (+)

40817877 .. 40823666

Gene Structure 5790 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG379200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGCAACCGGCACCTGGCGAAAGTGGAGGAGAAGTGACTCGCGGAGGTGGAGGAGGACTCGGCCGGTTCTGCTCGGCCCCGGCGTCATGGTTGGAAGCGCTGCTTGATGACGAAGAAGAGGACCCTTTGAAGCCCACCCAATGCCTCACCGACCTTCTTGCCGATAACTGCGAGGGGCCCGGTTCGACGGCAGTGGGGTTCGGTTCGGATACGACGGCGGATCCAGCTGCGGCGTTTCTGAGGCAGAACAGCTCTCCGGCCGACTTTGTCGGGAATTCGAGTGATGGGTCCGAAGGGTATTTCTCCGGCTTCGGGATTCCGGCCAGCCTCGACTATGTCTCGAACCCGAATTTCAGTAATGTTTCTTCTTCTTCGGCTGATAAGCGGGTTAAGGATGTGAAAATGGAGGAAGGTGGATTCGAGGAGTCAGGGACTCTAAGGGTTAGGGCAAAGCGAGGTTGTGCTACTCATCCAAGGAGTATTGCTGAAAGGGTCAGGAGGACTCGAATTAGTGACCGGATAAGGAAGCTTCAGGAGCTTGTACCCAACATGGATAAGGTTAGAGCTTCCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0042335 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

191

Amino Acids

20.2

Weight (kDa)

4.94

Isoelectric Point (pI)

44.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35460 AT1G35460 AT4G09180
fragaria_vesca	FvH4_5g31910 FvH4_5g31910 FvH4_5g31910
malus_domestica	MD08G1218800.v1.1 MD15G1407200.v1.1
prunus_persica	Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1
pyrus_communis	pycom08g18940 pycom15g36340
rosa_chinensis	RchiOBHm_Chr7g0227911
rosa_laevigata	RLG00000001604
rosa_multiflora	Rmu_co8004144.1_g000001 Rmu_sc0007737.1_g000003
rosa_roxburghii	Rroxscaffold_3G00231770
rosa_rugosa	Rorug07G0244500.1
rosa_samantha	Rh1CG340400 Rh1DG357700 Rh7AG397700 Rh7BG379200 Rh7CG415900 Rh7DG393200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	10
AccII	CGCG	1 cut(s)	42
AciI	CCGC	4 cut(s)	42, 218, 230, 385
AclWI	GGATC	2 cut(s)	215, 228
AcoI	YGGCCR	3 cut(s)	61, 258, 321
AcsI	RAATTY	2 cut(s)	274, 349
AcuI	CTGAAG	1 cut(s)	515
AcyI	GRCGYC	1 cut(s)	83
AfaI	GTAC	1 cut(s)	543
AfeI	AGCGCT	1 cut(s)	99
AfiI	CCNNNNNNNGG	2 cut(s)	14, 312
AgsI	TTSAA	1 cut(s)	130
AjnI	CCWGG	1 cut(s)	13
AluBI	AGCT	5 cut(s)	227, 252, 529, 538, 566
AluI	AGCT	5 cut(s)	227, 252, 529, 538, 566
Alw26I	GTCTC	1 cut(s)	343
AlwI	GGATC	2 cut(s)	215, 228
Aor51HI	AGCGCT	1 cut(s)	99
AoxI	GGCC	5 cut(s)	61, 75, 176, 258, 321
ApaI	GGGCCC	1 cut(s)	180
ApeKI	GCWGC	2 cut(s)	100, 227
ApoI	RAATTY	2 cut(s)	274, 349
AspLEI	GCGC	1 cut(s)	100
AspS9I	GGNCC	5 cut(s)	76, 121, 176, 177, 288
AsuC2I	CCSGG	2 cut(s)	80, 180
AsuHPI	GGTGA	1 cut(s)	139
AvaII	GGWCC	2 cut(s)	121, 288
BaeGI	GKGCMC	1 cut(s)	180
BamHI	GGATCC	1 cut(s)	220
BanI	GGYRCC	1 cut(s)	10
BanII	GRGCYC	1 cut(s)	180
BarI	GAAGNNNNNNTAC	2 cut(s)	349, 381
BbvI	GCAGC	2 cut(s)	87, 214
BccI	CCATC	1 cut(s)	278
BceAI	ACGGC	2 cut(s)	204, 231
BcgI	CGANNNNNNTGC	2 cut(s)	140, 174
BciT130I	CCWGG	1 cut(s)	15
BciVI	GTATCC	1 cut(s)	202
BcnI	CCSGG	2 cut(s)	80, 180
BcoDI	GTCTC	1 cut(s)	343
BfoI	RGCGCY	1 cut(s)	101
BfuI	GTATCC	1 cut(s)	202
BisI	GCNGC	3 cut(s)	101, 228, 231
BlsI	GCNGC	3 cut(s)	102, 229, 232
Bme1390I	CCNGG	3 cut(s)	15, 80, 180
Bme18I	GGWCC	2 cut(s)	121, 288
BmgT120I	GGNCC	5 cut(s)	76, 121, 176, 177, 288
BmiI	GGNNCC	7 cut(s)	12, 78, 123, 177, 178, 222, 289
BmrFI	CCNGG	3 cut(s)	15, 80, 180
BplI	GAGNNNNNCTC	2 cut(s)	42, 74
BpuMI	CCSGG	2 cut(s)	80, 180
BsaHI	GRCGYC	1 cut(s)	83
BsaJI	CCNNGG	2 cut(s)	78, 473
BsaWI	WCCGGW	1 cut(s)	516
BsaXI	ACNNNNNCTCC	2 cut(s)	18, 48
Bsc4I	CCNNNNNNNGG	2 cut(s)	14, 312
Bse118I	RCCGGY	2 cut(s)	7, 63
BseBI	CCWGG	1 cut(s)	15
BseDI	CCNNGG	2 cut(s)	78, 473
BseGI	GGATG	2 cut(s)	400, 469
BseLI	CCNNNNNNNGG	2 cut(s)	14, 312
BseMII	CTCAG	1 cut(s)	230
BseRI	GAGGAG	3 cut(s)	42, 66, 437
BseSI	GKGCMC	1 cut(s)	180
BseX3I	CGGCCG	2 cut(s)	61, 258
BseXI	GCAGC	2 cut(s)	87, 214
Bsh1236I	CGCG	1 cut(s)	42
Bsh1285I	CGRYCG	2 cut(s)	64, 261
BshFI	GGCC	5 cut(s)	63, 77, 178, 260, 323
BshNI	GGYRCC	1 cut(s)	10
BsiEI	CGRYCG	2 cut(s)	64, 261
BsiSI	CCGG	8 cut(s)	8, 64, 80, 180, 257, 306, 320, 517
BslFI	GGGAC	1 cut(s)	445
BslI	CCNNNNNNNGG	2 cut(s)	14, 312
BsmAI	GTCTC	1 cut(s)	343
BsmFI	GGGAC	1 cut(s)	445
BsnI	GGCC	5 cut(s)	63, 77, 178, 260, 323
Bsp120I	GGGCCC	1 cut(s)	176
Bsp1286I	GDGCHC	1 cut(s)	180
Bsp143I	GATC	1 cut(s)	220
BspACI	CCGC	4 cut(s)	42, 218, 230, 385
BspANI	GGCC	5 cut(s)	63, 77, 178, 260, 323
BspCNI	CTCAG	1 cut(s)	231
BspFNI	CGCG	1 cut(s)	42
BspLI	GGNNCC	7 cut(s)	12, 78, 123, 177, 178, 222, 289
BspPI	GGATC	2 cut(s)	215, 228
BspT107I	GGYRCC	1 cut(s)	10
BsrFI	RCCGGY	2 cut(s)	7, 63
BssAI	RCCGGY	2 cut(s)	7, 63
BssECI	CCNNGG	2 cut(s)	78, 473
BssMI	GATC	1 cut(s)	220
BssNI	GRCGYC	1 cut(s)	83
BssT1I	CCWWGG	1 cut(s)	473
Bst2UI	CCWGG	1 cut(s)	15
Bst6I	CTCTTC	1 cut(s)	111
BstACI	GRCGYC	1 cut(s)	83
BstC8I	GCNNGC	1 cut(s)	325
BstDEI	CTNAG	2 cut(s)	239, 437
BstF5I	GGATG	2 cut(s)	400, 469
BstFNI	CGCG	1 cut(s)	42
BstH2I	RGCGCY	1 cut(s)	101
BstHHI	GCGC	1 cut(s)	100
BstKTI	GATC	1 cut(s)	223
BstMAI	GTCTC	1 cut(s)	343
BstMBI	GATC	1 cut(s)	220
BstMCI	CGRYCG	2 cut(s)	64, 261
BstMWI	GCNNNNNNNGC	3 cut(s)	69, 224, 535
BstNI	CCWGG	1 cut(s)	15
BstSCI	CCNGG	3 cut(s)	13, 78, 178
BstSLI	GKGCMC	1 cut(s)	180
BstUI	CGCG	1 cut(s)	42
BstV1I	GCAGC	2 cut(s)	87, 214
BstX2I	RGATCY	1 cut(s)	220
BstYI	RGATCY	1 cut(s)	220
BstZI	CGGCCG	2 cut(s)	61, 258
BsuI	GTATCC	1 cut(s)	202
BsuRI	GGCC	5 cut(s)	63, 77, 178, 260, 323
BtsCI	GGATG	2 cut(s)	400, 469
BtsI	GCAGTG	1 cut(s)	198
BtsIMutI	CAGTG	1 cut(s)	198
Cac8I	GCNNGC	1 cut(s)	325
CfoI	GCGC	1 cut(s)	100
Cfr10I	RCCGGY	2 cut(s)	7, 63
Cfr13I	GGNCC	5 cut(s)	76, 121, 176, 177, 288
CseI	GACGC	1 cut(s)	72
Csp6I	GTAC	1 cut(s)	542
CviAII	CATG	2 cut(s)	87, 550
CviQI	GTAC	1 cut(s)	542
DdeI	CTNAG	2 cut(s)	239, 437
DpnI	GATC	1 cut(s)	222
DpnII	GATC	1 cut(s)	220
EaeI	YGGCCR	3 cut(s)	61, 258, 321
EagI	CGGCCG	2 cut(s)	61, 258
Eam1104I	CTCTTC	1 cut(s)	111
EarI	CTCTTC	1 cut(s)	111
EciI	GGCGGA	1 cut(s)	233
EclXI	CGGCCG	2 cut(s)	61, 258
Eco130I	CCWWGG	1 cut(s)	473
Eco24I	GRGCYC	1 cut(s)	180
Eco47I	GGWCC	2 cut(s)	121, 288
Eco47III	AGCGCT	1 cut(s)	99
Eco52I	CGGCCG	2 cut(s)	61, 258
Eco57I	CTGAAG	1 cut(s)	515
EcoO109I	RGGNCCY	2 cut(s)	121, 176
EcoRI	GAATTC	1 cut(s)	274
EcoRII	CCWGG	1 cut(s)	13
EcoT14I	CCWWGG	1 cut(s)	473
EcoT38I	GRGCYC	1 cut(s)	180
ErhI	CCWWGG	1 cut(s)	473
FaeI	CATG	2 cut(s)	90, 553
FaiI	YATR	3 cut(s)	88, 336, 551
FalI	AAGNNNNNCTT	2 cut(s)	87, 119
FaqI	GGGAC	1 cut(s)	445
FatI	CATG	2 cut(s)	86, 549
FauI	CCCGC	1 cut(s)	378
Fnu4HI	GCNGC	3 cut(s)	101, 228, 231
FokI	GGATG	2 cut(s)	407, 456
FriOI	GRGCYC	1 cut(s)	180
Fsp4HI	GCNGC	3 cut(s)	101, 228, 231
GlaI	GCGC	1 cut(s)	99
GluI	GCNGC	3 cut(s)	101, 228, 231
HaeII	RGCGCY	1 cut(s)	101
HaeIII	GGCC	5 cut(s)	63, 77, 178, 260, 323
HapII	CCGG	8 cut(s)	8, 64, 80, 180, 257, 306, 320, 517
HgaI	GACGC	1 cut(s)	72
HhaI	GCGC	1 cut(s)	100
Hin1I	GRCGYC	1 cut(s)	83
Hin1II	CATG	2 cut(s)	90, 553
Hin6I	GCGC	1 cut(s)	98
HinP1I	GCGC	1 cut(s)	98
HindIII	AAGCTT	1 cut(s)	527
HinfI	GANTC	7 cut(s)	37, 57, 316, 417, 425, 433, 502
HpaII	CCGG	8 cut(s)	8, 64, 80, 180, 257, 306, 320, 517
HphI	GGTGA	1 cut(s)	139
Hpy188I	TCNGA	3 cut(s)	208, 240, 292
Hpy188III	TCNNGA	5 cut(s)	271, 313, 340, 496, 533
Hpy99I	CGWCG	2 cut(s)	190, 217
HpyAV	CCTTC	3 cut(s)	164, 287, 404
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	3 cut(s)	69, 224, 535
HpyF3I	CTNAG	2 cut(s)	239, 437
Hsp92I	GRCGYC	1 cut(s)	83
Hsp92II	CATG	2 cut(s)	90, 553
HspAI	GCGC	1 cut(s)	98
Kzo9I	GATC	1 cut(s)	220
LmnI	GCTCC	1 cut(s)	535
Lsp1109I	GCAGC	2 cut(s)	87, 214
MaeIII	GTNAC	2 cut(s)	34, 512
MalI	GATC	1 cut(s)	222
MboI	GATC	1 cut(s)	220
MboII	GAAGA	5 cut(s)	125, 128, 357, 360, 363
MflI	RGATCY	1 cut(s)	220
MhlI	GDGCHC	1 cut(s)	180
MluCI	AATT	3 cut(s)	274, 349, 507
MlyI	GAGTC	5 cut(s)	31, 51, 427, 434, 496
MmeI	TCCRAC	1 cut(s)	72
MseI	TTAA	1 cut(s)	390
MspA1I	CMGCKG	1 cut(s)	227
MspI	CCGG	8 cut(s)	8, 64, 80, 180, 257, 306, 320, 517
MspR9I	CCNGG	3 cut(s)	15, 80, 180
MvaI	CCWGG	1 cut(s)	15
MvnI	CGCG	1 cut(s)	42
MwoI	GCNNNNNNNGC	3 cut(s)	69, 224, 535
NciI	CCSGG	2 cut(s)	80, 180
NdeII	GATC	1 cut(s)	220
NlaIII	CATG	2 cut(s)	90, 553
NlaIV	GGNNCC	7 cut(s)	12, 78, 123, 177, 178, 222, 289
NmeAIII	GCCGAG	2 cut(s)	39, 53
NmuCI	GTSAC	2 cut(s)	34, 512
PcsI	WCGNNNNNNNCGW	1 cut(s)	80
PfeI	GAWTC	2 cut(s)	316, 417
PflFI	GACNNNGTC	2 cut(s)	266, 335
PkrI	GCNGC	3 cut(s)	102, 229, 232
PleI	GAGTC	5 cut(s)	31, 51, 427, 433, 496
PpsI	GAGTC	5 cut(s)	31, 51, 427, 433, 496
PpuMI	RGGWCCY	1 cut(s)	121
Psp5II	RGGWCCY	1 cut(s)	121
Psp6I	CCWGG	1 cut(s)	13
PspGI	CCWGG	1 cut(s)	13
PspN4I	GGNNCC	7 cut(s)	12, 78, 123, 177, 178, 222, 289
PspOMI	GGGCCC	1 cut(s)	176
PspPI	GGNCC	5 cut(s)	76, 121, 176, 177, 288
PspPPI	RGGWCCY	1 cut(s)	121
PsuI	RGATCY	1 cut(s)	220
PsyI	GACNNNGTC	2 cut(s)	266, 335
PvuII	CAGCTG	1 cut(s)	227
RsaI	GTAC	1 cut(s)	543
RsaNI	GTAC	1 cut(s)	542
SaqAI	TTAA	1 cut(s)	390
SatI	GCNGC	3 cut(s)	101, 228, 231
Sau3AI	GATC	1 cut(s)	220
Sau96I	GGNCC	5 cut(s)	76, 121, 176, 177, 288
SchI	GAGTC	5 cut(s)	31, 51, 427, 434, 496
ScrFI	CCNGG	3 cut(s)	15, 80, 180
SduI	GDGCHC	1 cut(s)	180
SinI	GGWCC	2 cut(s)	121, 288
Sse9I	AATT	3 cut(s)	274, 349, 507
SsiI	CCGC	4 cut(s)	42, 218, 230, 385
StyD4I	CCNGG	3 cut(s)	13, 78, 178
StyI	CCWWGG	1 cut(s)	473
TaqI	TCGA	6 cut(s)	185, 278, 330, 341, 420, 505
TasI	AATT	3 cut(s)	274, 349, 507
TauI	GCSGC	1 cut(s)	233
TfiI	GAWTC	2 cut(s)	316, 417
Tru1I	TTAA	1 cut(s)	390
Tru9I	TTAA	1 cut(s)	390
TscAI	CASTG	1 cut(s)	198
TseFI	GTSAC	2 cut(s)	34, 512
TseI	GCWGC	2 cut(s)	100, 227
Tsp45I	GTSAC	2 cut(s)	34, 512
TspRI	CASTG	1 cut(s)	198
Tth111I	GACNNNGTC	2 cut(s)	266, 335
VpaK11BI	GGWCC	2 cut(s)	121, 288
XapI	RAATTY	2 cut(s)	274, 349

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.