Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0004308

Physical Location & Seq

Genomic Coordinates Reverse (-)

45290648 .. 45296327

Gene Structure 5680 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G554600.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGCAACGGGCAGCTGGTGGAAGCAGCAGTGGCGGCGGAGAAGTGAGTCGGGGAGGCGGGCTCGGCCGGTTCTGCTCGGCGCCGGCGACATGGTTAGAGGCACTGCTTGAGGAGGAAGAAGAAGACCCATTGAAGCCCACCCAGTGCTTAACTGAGCTTCTTGCTGAAAACACAGGAGCCACATCAGTAGGGTTTGGTTCTGCGACAGTGGATCCAGTGTCGTATGAAGCTGCCGCCGCTGCTGGATTTCTTAGCCGACAGAACAGCTCTCCGGCGGAGTTTCTGGGGAGTTCAAACGACGGGTCGGAAGGGTATTTCTCGGGGTTTGGAATTCCGGCGCACCTCGACTTCGTGTCCTTGTCCCCAAATAGCTCTTCTCCTTCTGCTAATAAGAGGGTTAGGGAGGTGAAATTGGAGGAAGGTGGATTGGAGGATGCAGTGCCTTGCAGGGTTAGGGCCAAGCGTGGATGTGCTACGCATCCTAGGAGCATTGCTGAAAGGGTCCGGAGGACTCGAATCAGTGACCGCATAAGGAAGCTTCAAGACCTTGTGCCCAACATGGATAAGCAAACTAATACTGCCGATATGTTAGACGAGGCAGTGGAGTATGTGAAGTTTCTTCAGAAGCAGATTCAGGAACTTTCAGAGCATCAGCGCAGATGCAAATGCATAGCTAAAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0042335 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

228

Amino Acids

24.45

Weight (kDa)

5.59

Isoelectric Point (pI)

52.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35460 AT1G35460 AT4G09180
fragaria_vesca	FvH4_5g31910 FvH4_5g31910 FvH4_5g31910
malus_domestica	MD08G1218800.v1.1 MD15G1407200.v1.1
prunus_persica	Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1
pyrus_communis	pycom08g18940 pycom15g36340
rosa_chinensis	RchiOBHm_Chr7g0227911
rosa_laevigata	RLG00000001604
rosa_multiflora	Rmu_co8004144.1_g000001 Rmu_sc0007737.1_g000003
rosa_roxburghii	Rroxscaffold_3G00231770
rosa_rugosa	Rorug07G0244500.1
rosa_samantha	Rh1CG340400 Rh1DG357700 Rh7AG397700 Rh7BG379200 Rh7CG415900 Rh7DG393200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	79
AccIII	TCCGGA	1 cut(s)	504
AciI	CCGC	7 cut(s)	33, 36, 57, 234, 237, 275, 526
AclWI	GGATC	2 cut(s)	206, 219
AcoI	YGGCCR	1 cut(s)	64
AcsI	RAATTY	1 cut(s)	330
AcuI	CTGAAG	1 cut(s)	605
AcyI	GRCGYC	1 cut(s)	80
AdeI	CACNNNGTG	1 cut(s)	144
AgsI	TTSAA	3 cut(s)	133, 294, 542
AhdI	GACNNNNNGTC	1 cut(s)	352
AjuI	GAANNNNNNNTTGG	2 cut(s)	358, 390
AluBI	AGCT	7 cut(s)	14, 157, 230, 267, 372, 538, 674
AluI	AGCT	7 cut(s)	14, 157, 230, 267, 372, 538, 674
AlwI	GGATC	2 cut(s)	206, 219
Ama87I	CYCGRG	1 cut(s)	319
Aor13HI	TCCGGA	1 cut(s)	504
AoxI	GGCC	2 cut(s)	64, 456
ApeKI	GCWGC	4 cut(s)	11, 24, 230, 239
ApoI	RAATTY	1 cut(s)	330
ArsI	GACNNNNNNTTYG	2 cut(s)	287, 319
AspA2I	CCTAGG	1 cut(s)	482
AspLEI	GCGC	3 cut(s)	82, 340, 657
AspS9I	GGNCC	2 cut(s)	456, 502
AsuHPI	GGTGA	1 cut(s)	418
AvaI	CYCGRG	1 cut(s)	319
AvaII	GGWCC	1 cut(s)	502
AvrII	CCTAGG	1 cut(s)	482
BaeGI	GKGCMC	1 cut(s)	555
BamHI	GGATCC	1 cut(s)	211
BanI	GGYRCC	1 cut(s)	79
BanII	GRGCYC	1 cut(s)	63
BbsI	GAAGAC	1 cut(s)	129
BbvI	GCAGC	4 cut(s)	23, 36, 217, 226
BfaI	CTAG	1 cut(s)	483
BfoI	RGCGCY	1 cut(s)	83
BisI	GCNGC	7 cut(s)	12, 25, 34, 231, 234, 237, 240
BlnI	CCTAGG	1 cut(s)	482
BlsI	GCNGC	7 cut(s)	13, 26, 35, 232, 235, 238, 241
Bme18I	GGWCC	1 cut(s)	502
BmeRI	GACNNNNNGTC	1 cut(s)	352
BmeT110I	CYCGRG	1 cut(s)	319
BmgT120I	GGNCC	2 cut(s)	456, 502
BmiI	GGNNCC	4 cut(s)	81, 178, 213, 503
BmrI	ACTGGG	1 cut(s)	136
BmsI	GCATC	4 cut(s)	424, 487, 650, 658
BmuI	ACTGGG	1 cut(s)	136
BpiI	GAAGAC	1 cut(s)	129
BplI	GAGNNNNNCTC	2 cut(s)	45, 77
BpuEI	CTTGAG	1 cut(s)	128
BsaHI	GRCGYC	1 cut(s)	80
BsaJI	CCNNGG	1 cut(s)	482
BsaWI	WCCGGW	1 cut(s)	504
Bse118I	RCCGGY	2 cut(s)	66, 82
Bse1I	ACTGG	2 cut(s)	142, 215
Bse3DI	GCAATG	1 cut(s)	489
BseAI	TCCGGA	1 cut(s)	504
BseDI	CCNNGG	1 cut(s)	482
BseGI	GGATG	3 cut(s)	439, 473, 478
BseMI	GCAATG	1 cut(s)	489
BseMII	CTCAG	1 cut(s)	144
BseNI	ACTGG	2 cut(s)	142, 215
BseRI	GAGGAG	1 cut(s)	125
BseSI	GKGCMC	1 cut(s)	555
BseX3I	CGGCCG	1 cut(s)	64
BseXI	GCAGC	4 cut(s)	23, 36, 217, 226
Bsh1285I	CGRYCG	1 cut(s)	67
BshFI	GGCC	2 cut(s)	66, 458
BshNI	GGYRCC	1 cut(s)	79
BsiEI	CGRYCG	1 cut(s)	67
BsiHKCI	CYCGRG	1 cut(s)	319
BsiSI	CCGG	5 cut(s)	67, 83, 272, 335, 505
BslFI	GGGAC	1 cut(s)	346
BsmFI	GGGAC	1 cut(s)	346
BsnI	GGCC	2 cut(s)	66, 458
BsoBI	CYCGRG	1 cut(s)	319
Bsp1286I	GDGCHC	2 cut(s)	63, 555
Bsp13I	TCCGGA	1 cut(s)	504
Bsp143I	GATC	1 cut(s)	211
BspACI	CCGC	7 cut(s)	33, 36, 57, 234, 237, 275, 526
BspANI	GGCC	2 cut(s)	66, 458
BspCNI	CTCAG	1 cut(s)	145
BspEI	TCCGGA	1 cut(s)	504
BspLI	GGNNCC	4 cut(s)	81, 178, 213, 503
BspPI	GGATC	2 cut(s)	206, 219
BspQI	GCTCTTC	1 cut(s)	379
BspT107I	GGYRCC	1 cut(s)	79
BsrDI	GCAATG	1 cut(s)	489
BsrFI	RCCGGY	2 cut(s)	66, 82
BsrI	ACTGG	2 cut(s)	142, 215
BssAI	RCCGGY	2 cut(s)	66, 82
BssECI	CCNNGG	1 cut(s)	482
BssMI	GATC	1 cut(s)	211
BssNI	GRCGYC	1 cut(s)	80
BssT1I	CCWWGG	1 cut(s)	482
Bst4CI	ACNGT	1 cut(s)	208
Bst6I	CTCTTC	1 cut(s)	379
BstACI	GRCGYC	1 cut(s)	80
BstC8I	GCNNGC	2 cut(s)	59, 84
BstDEI	CTNAG	2 cut(s)	153, 251
BstF5I	GGATG	3 cut(s)	439, 473, 478
BstH2I	RGCGCY	1 cut(s)	83
BstHHI	GCGC	3 cut(s)	82, 340, 657
BstKTI	GATC	1 cut(s)	214
BstMBI	GATC	1 cut(s)	211
BstMCI	CGRYCG	1 cut(s)	67
BstMWI	GCNNNNNNNGC	6 cut(s)	30, 33, 63, 72, 236, 239
BstSLI	GKGCMC	1 cut(s)	555
BstV1I	GCAGC	4 cut(s)	23, 36, 217, 226
BstV2I	GAAGAC	1 cut(s)	129
BstX2I	RGATCY	1 cut(s)	211
BstYI	RGATCY	1 cut(s)	211
BstZI	CGGCCG	1 cut(s)	64
BsuRI	GGCC	2 cut(s)	66, 458
BtsCI	GGATG	3 cut(s)	439, 473, 478
BtsI	GCAGTG	4 cut(s)	34, 101, 444, 606
BtsIMutI	CAGTG	8 cut(s)	34, 101, 149, 213, 222, 444, 526, 606
Cac8I	GCNNGC	2 cut(s)	59, 84
CfoI	GCGC	3 cut(s)	82, 340, 657
Cfr10I	RCCGGY	2 cut(s)	66, 82
Cfr13I	GGNCC	2 cut(s)	456, 502
CviAII	CATG	2 cut(s)	90, 559
DdeI	CTNAG	2 cut(s)	153, 251
DinI	GGCGCC	1 cut(s)	81
DpnI	GATC	1 cut(s)	213
DpnII	GATC	1 cut(s)	211
DraIII	CACNNNGTG	1 cut(s)	144
DriI	GACNNNNNGTC	1 cut(s)	352
EaeI	YGGCCR	1 cut(s)	64
EagI	CGGCCG	1 cut(s)	64
Eam1104I	CTCTTC	1 cut(s)	379
Eam1105I	GACNNNNNGTC	1 cut(s)	352
EarI	CTCTTC	1 cut(s)	379
EciI	GGCGGA	2 cut(s)	51, 290
EclXI	CGGCCG	1 cut(s)	64
Eco130I	CCWWGG	1 cut(s)	482
Eco24I	GRGCYC	1 cut(s)	63
Eco47I	GGWCC	1 cut(s)	502
Eco52I	CGGCCG	1 cut(s)	64
Eco57I	CTGAAG	1 cut(s)	605
Eco88I	CYCGRG	1 cut(s)	319
EcoRI	GAATTC	1 cut(s)	330
EcoT14I	CCWWGG	1 cut(s)	482
EcoT22I	ATGCAT	1 cut(s)	671
EcoT38I	GRGCYC	1 cut(s)	63
EgeI	GGCGCC	1 cut(s)	81
EheI	GGCGCC	1 cut(s)	81
ErhI	CCWWGG	1 cut(s)	482
FaeI	CATG	2 cut(s)	93, 562
FaiI	YATR	7 cut(s)	91, 225, 530, 560, 587, 609, 671
FaqI	GGGAC	1 cut(s)	346
FatI	CATG	2 cut(s)	89, 558
FauI	CCCGC	1 cut(s)	50
Fnu4HI	GCNGC	7 cut(s)	12, 25, 34, 231, 234, 237, 240
FokI	GGATG	3 cut(s)	446, 465, 480
FriOI	GRGCYC	1 cut(s)	63
Fsp4HI	GCNGC	7 cut(s)	12, 25, 34, 231, 234, 237, 240
FspBI	CTAG	1 cut(s)	483
GlaI	GCGC	3 cut(s)	81, 339, 656
GluI	GCNGC	7 cut(s)	12, 25, 34, 231, 234, 237, 240
HaeII	RGCGCY	1 cut(s)	83
HaeIII	GGCC	2 cut(s)	66, 458
HapII	CCGG	5 cut(s)	67, 83, 272, 335, 505
HhaI	GCGC	3 cut(s)	82, 340, 657
Hin1I	GRCGYC	1 cut(s)	80
Hin1II	CATG	2 cut(s)	93, 562
Hin6I	GCGC	3 cut(s)	80, 338, 655
HinP1I	GCGC	3 cut(s)	80, 338, 655
HindIII	AAGCTT	1 cut(s)	536
HinfI	GANTC	4 cut(s)	46, 511, 516, 631
HpaII	CCGG	5 cut(s)	67, 83, 272, 335, 505
HphI	GGTGA	1 cut(s)	418
Hpy188I	TCNGA	3 cut(s)	307, 624, 646
Hpy188III	TCNNGA	3 cut(s)	505, 542, 635
Hpy99I	CGWCG	1 cut(s)	302
HpyAV	CCTTC	3 cut(s)	302, 390, 413
HpyCH4III	ACNGT	1 cut(s)	208
HpyCH4V	TGCA	5 cut(s)	4, 437, 447, 663, 669
HpyF10VI	GCNNNNNNNGC	6 cut(s)	30, 33, 63, 72, 236, 239
HpyF3I	CTNAG	2 cut(s)	153, 251
Hsp92I	GRCGYC	1 cut(s)	80
Hsp92II	CATG	2 cut(s)	93, 562
HspAI	GCGC	3 cut(s)	80, 338, 655
KasI	GGCGCC	1 cut(s)	79
Kpn2I	TCCGGA	1 cut(s)	504
KroI	GCCGGC	1 cut(s)	82
KroNI	GCCGGC	1 cut(s)	84
Kzo9I	GATC	1 cut(s)	211
LguI	GCTCTTC	1 cut(s)	379
LmnI	GCTCC	2 cut(s)	176, 486
Lsp1109I	GCAGC	4 cut(s)	23, 36, 217, 226
LweI	GCATC	4 cut(s)	424, 487, 650, 658
MaeI	CTAG	1 cut(s)	483
MaeIII	GTNAC	1 cut(s)	521
MalI	GATC	1 cut(s)	213
MboI	GATC	1 cut(s)	211
MboII	GAAGA	5 cut(s)	128, 131, 134, 366, 611
MflI	RGATCY	1 cut(s)	211
MhlI	GDGCHC	2 cut(s)	63, 555
MluCI	AATT	2 cut(s)	330, 410
Mly113I	GGCGCC	1 cut(s)	80
MlyI	GAGTC	2 cut(s)	55, 505
MmeI	TCCRAC	1 cut(s)	285
Mph1103I	ATGCAT	1 cut(s)	671
MreI	CGCCGGCG	1 cut(s)	82
MroI	TCCGGA	1 cut(s)	504
MroNI	GCCGGC	1 cut(s)	82
MseI	TTAA	1 cut(s)	149
MspA1I	CMGCKG	2 cut(s)	14, 239
MspI	CCGG	5 cut(s)	67, 83, 272, 335, 505
MwoI	GCNNNNNNNGC	6 cut(s)	30, 33, 63, 72, 236, 239
NaeI	GCCGGC	1 cut(s)	84
NarI	GGCGCC	1 cut(s)	80
NdeII	GATC	1 cut(s)	211
NgoMIV	GCCGGC	1 cut(s)	82
NlaIII	CATG	2 cut(s)	93, 562
NlaIV	GGNNCC	4 cut(s)	81, 178, 213, 503
NmeAIII	GCCGAG	2 cut(s)	42, 56
NmuCI	GTSAC	1 cut(s)	521
NsiI	ATGCAT	1 cut(s)	671
PciSI	GCTCTTC	1 cut(s)	379
PcsI	WCGNNNNNNNCGW	1 cut(s)	83
PdiI	GCCGGC	1 cut(s)	84
PfeI	GAWTC	2 cut(s)	516, 631
PkrI	GCNGC	7 cut(s)	13, 26, 35, 232, 235, 238, 241
PleI	GAGTC	2 cut(s)	54, 505
PluTI	GGCGCC	1 cut(s)	83
PpsI	GAGTC	2 cut(s)	54, 505
PspN4I	GGNNCC	4 cut(s)	81, 178, 213, 503
PspPI	GGNCC	2 cut(s)	456, 502
PsuI	RGATCY	1 cut(s)	211
PvuII	CAGCTG	1 cut(s)	14
SapI	GCTCTTC	1 cut(s)	379
SaqAI	TTAA	1 cut(s)	149
SatI	GCNGC	7 cut(s)	12, 25, 34, 231, 234, 237, 240
Sau3AI	GATC	1 cut(s)	211
Sau96I	GGNCC	2 cut(s)	456, 502
SchI	GAGTC	2 cut(s)	55, 505
SduI	GDGCHC	2 cut(s)	63, 555
SfaNI	GCATC	4 cut(s)	424, 487, 650, 658
SfoI	GGCGCC	1 cut(s)	81
SgrAI	CRCCGGYG	1 cut(s)	82
SinI	GGWCC	1 cut(s)	502
SmlI	CTYRAG	1 cut(s)	107
SmoI	CTYRAG	1 cut(s)	107
Sse9I	AATT	2 cut(s)	330, 410
SsiI	CCGC	7 cut(s)	33, 36, 57, 234, 237, 275, 526
SspDI	GGCGCC	1 cut(s)	79
SspMI	CTAG	1 cut(s)	483
StyI	CCWWGG	1 cut(s)	482
TaaI	ACNGT	1 cut(s)	208
TaqI	TCGA	2 cut(s)	345, 514
TasI	AATT	2 cut(s)	330, 410
TauI	GCSGC	3 cut(s)	36, 236, 239
TfiI	GAWTC	2 cut(s)	516, 631
Tru1I	TTAA	1 cut(s)	149
Tru9I	TTAA	1 cut(s)	149
TscAI	CASTG	8 cut(s)	34, 108, 149, 213, 222, 444, 526, 606
TseFI	GTSAC	1 cut(s)	521
TseI	GCWGC	4 cut(s)	11, 24, 230, 239
Tsp45I	GTSAC	1 cut(s)	521
TspDTI	ATGAA	1 cut(s)	240
TspRI	CASTG	8 cut(s)	34, 108, 149, 213, 222, 444, 526, 606
VpaK11BI	GGWCC	1 cut(s)	502
XapI	RAATTY	1 cut(s)	330
XmaJI	CCTAGG	1 cut(s)	482
XspI	CTAG	1 cut(s)	483
Zsp2I	ATGCAT	1 cut(s)	671

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.