Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0004308

Physical Location & Seq

Genomic Coordinates Forward (+)

23004027 .. 23008551

Gene Structure 4525 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g31910.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGCAACCGGCACCTGGCGGAAGTGGAGAAGTGACTCGAGGTGGGCTCGGCCGGTTCTGCTCGGCGCCGGCGTCATGGTTGGAGGCGCTGCTTGAGGACGAGGAAGAGGACCCTTTGAAGCCAACCCAGTGCCTCACCGACCTTCTTGCAGATAGCTGCGGTGGGCCCACTTCGTCTGTGGCGGTGGGGTTTGGTGCGGAAGTGGTGGCGGATCCAGCTGCGAGGTTTTTGAGACAGAACAGCTCTCCGGCCGACTTTGTCGGAAATTCGAGTGATGGGTCGGAAGGGTATTTCTCCGGGTTCGGTGGGATTCCGGCCAGCCAGCTCGACTATGTTTCTAACCCGAATTTCGGTAGCGTTTCTTCATCTTCTTTGGCTAATAAGCGGGTTCGGGAGGTGAAAATGGAGGAAGGTGGATTGGAGGAGTCAGGAGCTCTGAGGGTTAGGGCAAAGAGAGGTTGTGCTACTCATCCAAGGAGTATTGCTGAAAGGGTTAGGAGGACTCGAATTAGTGACCGGATAAGGAAGCTTCAGGAGCTGGTACCCAACATGGATAAGCAAACTAATACTGCGGATATGTTAGACGAGGCAGTGGAGTATGTGAAGTTTCTTCAGAAACAGATTCAGGAGTTGTCAGAGTATCAGCGCAGGTGCAAATGCATGCCTAAAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0042335 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

225

Amino Acids

24.29

Weight (kDa)

5.32

Isoelectric Point (pI)

56.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	160 - 205	1.3e-09	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	163 - 208	5.8e-06	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35460 AT1G35460 AT4G09180
fragaria_vesca	FvH4_5g31910 FvH4_5g31910 FvH4_5g31910
malus_domestica	MD08G1218800.v1.1 MD15G1407200.v1.1
prunus_persica	Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1
pyrus_communis	pycom08g18940 pycom15g36340
rosa_chinensis	RchiOBHm_Chr7g0227911
rosa_laevigata	RLG00000001604
rosa_multiflora	Rmu_co8004144.1_g000001 Rmu_sc0007737.1_g000003
rosa_roxburghii	Rroxscaffold_3G00231770
rosa_rugosa	Rorug07G0244500.1
rosa_samantha	Rh1CG340400 Rh1DG357700 Rh7AG397700 Rh7BG379200 Rh7CG415900 Rh7DG393200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	639
Acc36I	ACCTGC	1 cut(s)	639
Acc65I	GGTACC	1 cut(s)	541
AccB1I	GGYRCC	3 cut(s)	10, 64, 541
AciI	CCGC	7 cut(s)	18, 159, 182, 197, 209, 385, 572
AclWI	GGATC	2 cut(s)	206, 219
AcoI	YGGCCR	3 cut(s)	49, 249, 315
AcsI	RAATTY	2 cut(s)	265, 346
AcuI	CTGAAG	2 cut(s)	515, 596
AcyI	GRCGYC	2 cut(s)	65, 71
AfaI	GTAC	1 cut(s)	543
AfiI	CCNNNNNNNGG	2 cut(s)	14, 350
AgsI	TTSAA	1 cut(s)	118
AjnI	CCWGG	1 cut(s)	13
AluBI	AGCT	7 cut(s)	156, 218, 243, 325, 434, 529, 538
AluI	AGCT	7 cut(s)	156, 218, 243, 325, 434, 529, 538
Alw21I	GWGCWC	1 cut(s)	436
Alw26I	GTCTC	1 cut(s)	226
AlwI	GGATC	2 cut(s)	206, 219
AlwNI	CAGNNNCTG	1 cut(s)	538
Ama87I	CYCGRG	1 cut(s)	36
AoxI	GGCC	4 cut(s)	49, 164, 249, 315
ApaI	GGGCCC	1 cut(s)	168
ApeKI	GCWGC	3 cut(s)	88, 156, 218
ApoI	RAATTY	2 cut(s)	265, 346
Asp718I	GGTACC	1 cut(s)	541
AspLEI	GCGC	3 cut(s)	67, 88, 648
AspS9I	GGNCC	3 cut(s)	109, 164, 165
AsuC2I	CCSGG	1 cut(s)	298
AsuHPI	GGTGA	2 cut(s)	127, 409
AvaI	CYCGRG	1 cut(s)	36
AvaII	GGWCC	1 cut(s)	109
BaeGI	GKGCMC	1 cut(s)	168
BamHI	GGATCC	1 cut(s)	211
BanI	GGYRCC	3 cut(s)	10, 64, 541
BanII	GRGCYC	3 cut(s)	48, 168, 436
BarI	GAAGNNNNNNTAC	2 cut(s)	346, 378
Bbv12I	GWGCWC	1 cut(s)	436
BbvI	GCAGC	3 cut(s)	75, 143, 205
BccI	CCATC	1 cut(s)	269
BcgI	CGANNNNNNTGC	2 cut(s)	128, 162
BciT130I	CCWGG	1 cut(s)	15
BcnI	CCSGG	1 cut(s)	298
BcoDI	GTCTC	1 cut(s)	226
BfoI	RGCGCY	2 cut(s)	68, 89
BfuAI	ACCTGC	1 cut(s)	639
BisI	GCNGC	3 cut(s)	89, 157, 219
BlsI	GCNGC	3 cut(s)	90, 158, 220
Bme1390I	CCNGG	2 cut(s)	15, 298
Bme18I	GGWCC	1 cut(s)	109
BmeT110I	CYCGRG	1 cut(s)	36
BmgT120I	GGNCC	3 cut(s)	109, 164, 165
BmiI	GGNNCC	6 cut(s)	12, 66, 111, 166, 213, 543
BmrFI	CCNGG	2 cut(s)	15, 298
BmrI	ACTGGG	1 cut(s)	121
BmuI	ACTGGG	1 cut(s)	121
BplI	GAGNNNNNCTC	2 cut(s)	30, 62
BpuEI	CTTGAG	1 cut(s)	113
BpuMI	CCSGG	1 cut(s)	298
BsaHI	GRCGYC	2 cut(s)	65, 71
BsaJI	CCNNGG	1 cut(s)	473
BsaWI	WCCGGW	1 cut(s)	516
Bsc4I	CCNNNNNNNGG	2 cut(s)	14, 350
Bse118I	RCCGGY	3 cut(s)	7, 51, 67
Bse1I	ACTGG	1 cut(s)	127
BseBI	CCWGG	1 cut(s)	15
BseDI	CCNNGG	1 cut(s)	473
BseGI	GGATG	1 cut(s)	469
BseLI	CCNNNNNNNGG	2 cut(s)	14, 350
BseMII	CTCAG	1 cut(s)	428
BseNI	ACTGG	1 cut(s)	127
BseRI	GAGGAG	1 cut(s)	437
BseSI	GKGCMC	1 cut(s)	168
BseX3I	CGGCCG	2 cut(s)	49, 249
BseXI	GCAGC	3 cut(s)	75, 143, 205
Bsh1285I	CGRYCG	2 cut(s)	52, 252
BshFI	GGCC	4 cut(s)	51, 166, 251, 317
BshNI	GGYRCC	3 cut(s)	10, 64, 541
BsiEI	CGRYCG	2 cut(s)	52, 252
BsiHKAI	GWGCWC	1 cut(s)	436
BsiHKCI	CYCGRG	1 cut(s)	36
BsiSI	CCGG	7 cut(s)	8, 52, 68, 248, 297, 314, 517
BslI	CCNNNNNNNGG	2 cut(s)	14, 350
BsmAI	GTCTC	1 cut(s)	226
BsnI	GGCC	4 cut(s)	51, 166, 251, 317
BsoBI	CYCGRG	1 cut(s)	36
Bsp120I	GGGCCC	1 cut(s)	164
Bsp1286I	GDGCHC	3 cut(s)	48, 168, 436
Bsp143I	GATC	1 cut(s)	211
BspACI	CCGC	7 cut(s)	18, 159, 182, 197, 209, 385, 572
BspANI	GGCC	4 cut(s)	51, 166, 251, 317
BspCNI	CTCAG	1 cut(s)	429
BspLI	GGNNCC	6 cut(s)	12, 66, 111, 166, 213, 543
BspMI	ACCTGC	1 cut(s)	639
BspPI	GGATC	2 cut(s)	206, 219
BspT107I	GGYRCC	3 cut(s)	10, 64, 541
BsrFI	RCCGGY	3 cut(s)	7, 51, 67
BsrI	ACTGG	1 cut(s)	127
BssAI	RCCGGY	3 cut(s)	7, 51, 67
BssECI	CCNNGG	1 cut(s)	473
BssMI	GATC	1 cut(s)	211
BssNI	GRCGYC	2 cut(s)	65, 71
BssT1I	CCWWGG	1 cut(s)	473
Bst2UI	CCWGG	1 cut(s)	15
Bst6I	CTCTTC	1 cut(s)	99
BstACI	GRCGYC	2 cut(s)	65, 71
BstC8I	GCNNGC	4 cut(s)	69, 319, 323, 662
BstDEI	CTNAG	1 cut(s)	437
BstF5I	GGATG	1 cut(s)	469
BstH2I	RGCGCY	2 cut(s)	68, 89
BstHHI	GCGC	3 cut(s)	67, 88, 648
BstKTI	GATC	1 cut(s)	214
BstMAI	GTCTC	1 cut(s)	226
BstMBI	GATC	1 cut(s)	211
BstMCI	CGRYCG	2 cut(s)	52, 252
BstMWI	GCNNNNNNNGC	3 cut(s)	57, 215, 535
BstNI	CCWGG	1 cut(s)	15
BstNSI	RCATGY	1 cut(s)	664
BstSCI	CCNGG	2 cut(s)	13, 296
BstSLI	GKGCMC	1 cut(s)	168
BstV1I	GCAGC	3 cut(s)	75, 143, 205
BstX2I	RGATCY	1 cut(s)	211
BstYI	RGATCY	1 cut(s)	211
BstZI	CGGCCG	2 cut(s)	49, 249
BsuRI	GGCC	4 cut(s)	51, 166, 251, 317
BtsCI	GGATG	1 cut(s)	469
BtsI	GCAGTG	1 cut(s)	597
BtsIMutI	CAGTG	2 cut(s)	134, 597
BveI	ACCTGC	1 cut(s)	639
Cac8I	GCNNGC	4 cut(s)	69, 319, 323, 662
CaiI	CAGNNNCTG	1 cut(s)	538
CfoI	GCGC	3 cut(s)	67, 88, 648
Cfr10I	RCCGGY	3 cut(s)	7, 51, 67
Cfr13I	GGNCC	3 cut(s)	109, 164, 165
CseI	GACGC	1 cut(s)	60
Csp6I	GTAC	1 cut(s)	542
CviAII	CATG	3 cut(s)	75, 550, 661
CviQI	GTAC	1 cut(s)	542
DdeI	CTNAG	1 cut(s)	437
DinI	GGCGCC	1 cut(s)	66
DpnI	GATC	1 cut(s)	213
DpnII	GATC	1 cut(s)	211
EaeI	YGGCCR	3 cut(s)	49, 249, 315
EagI	CGGCCG	2 cut(s)	49, 249
Eam1104I	CTCTTC	1 cut(s)	99
EarI	CTCTTC	1 cut(s)	99
EciI	GGCGGA	2 cut(s)	33, 224
Ecl136II	GAGCTC	1 cut(s)	434
EclXI	CGGCCG	2 cut(s)	49, 249
Eco130I	CCWWGG	1 cut(s)	473
Eco24I	GRGCYC	3 cut(s)	48, 168, 436
Eco47I	GGWCC	1 cut(s)	109
Eco52I	CGGCCG	2 cut(s)	49, 249
Eco53kI	GAGCTC	1 cut(s)	434
Eco57I	CTGAAG	2 cut(s)	515, 596
Eco88I	CYCGRG	1 cut(s)	36
EcoICRI	GAGCTC	1 cut(s)	434
EcoO109I	RGGNCCY	1 cut(s)	109
EcoRII	CCWGG	1 cut(s)	13
EcoT14I	CCWWGG	1 cut(s)	473
EcoT22I	ATGCAT	1 cut(s)	662
EcoT38I	GRGCYC	3 cut(s)	48, 168, 436
EgeI	GGCGCC	1 cut(s)	66
EheI	GGCGCC	1 cut(s)	66
ErhI	CCWWGG	1 cut(s)	473
FaeI	CATG	3 cut(s)	78, 553, 664
FaiI	YATR	6 cut(s)	76, 333, 551, 578, 600, 662
FatI	CATG	3 cut(s)	74, 549, 660
FauI	CCCGC	1 cut(s)	378
Fnu4HI	GCNGC	3 cut(s)	89, 157, 219
FokI	GGATG	1 cut(s)	456
FriOI	GRGCYC	3 cut(s)	48, 168, 436
Fsp4HI	GCNGC	3 cut(s)	89, 157, 219
GlaI	GCGC	3 cut(s)	66, 87, 647
GluI	GCNGC	3 cut(s)	89, 157, 219
HaeII	RGCGCY	2 cut(s)	68, 89
HaeIII	GGCC	4 cut(s)	51, 166, 251, 317
HapII	CCGG	7 cut(s)	8, 52, 68, 248, 297, 314, 517
HgaI	GACGC	1 cut(s)	60
HhaI	GCGC	3 cut(s)	67, 88, 648
Hin1I	GRCGYC	2 cut(s)	65, 71
Hin1II	CATG	3 cut(s)	78, 553, 664
Hin6I	GCGC	3 cut(s)	65, 86, 646
HinP1I	GCGC	3 cut(s)	65, 86, 646
HindIII	AAGCTT	1 cut(s)	527
HinfI	GANTC	5 cut(s)	34, 310, 425, 502, 622
HpaII	CCGG	7 cut(s)	8, 52, 68, 248, 297, 314, 517
HphI	GGTGA	2 cut(s)	127, 409
Hpy188I	TCNGA	5 cut(s)	263, 283, 438, 615, 637
Hpy188III	TCNNGA	4 cut(s)	392, 429, 533, 626
HpyAV	CCTTC	3 cut(s)	152, 278, 404
HpyCH4V	TGCA	4 cut(s)	4, 149, 654, 660
HpyF10VI	GCNNNNNNNGC	3 cut(s)	57, 215, 535
HpyF3I	CTNAG	1 cut(s)	437
Hsp92I	GRCGYC	2 cut(s)	65, 71
Hsp92II	CATG	3 cut(s)	78, 553, 664
HspAI	GCGC	3 cut(s)	65, 86, 646
KasI	GGCGCC	1 cut(s)	64
KpnI	GGTACC	1 cut(s)	545
KroI	GCCGGC	1 cut(s)	67
KroNI	GCCGGC	1 cut(s)	69
Kzo9I	GATC	1 cut(s)	211
LmnI	GCTCC	2 cut(s)	431, 535
Lsp1109I	GCAGC	3 cut(s)	75, 143, 205
MaeIII	GTNAC	2 cut(s)	31, 512
MalI	GATC	1 cut(s)	213
MboI	GATC	1 cut(s)	211
MboII	GAAGA	4 cut(s)	116, 354, 360, 602
MflI	RGATCY	1 cut(s)	211
MhlI	GDGCHC	3 cut(s)	48, 168, 436
MluCI	AATT	3 cut(s)	265, 346, 507
Mly113I	GGCGCC	1 cut(s)	65
MlyI	GAGTC	3 cut(s)	28, 434, 496
MmeI	TCCRAC	3 cut(s)	60, 241, 261
Mph1103I	ATGCAT	1 cut(s)	662
MreI	CGCCGGCG	1 cut(s)	67
MroNI	GCCGGC	1 cut(s)	67
MspA1I	CMGCKG	1 cut(s)	218
MspI	CCGG	7 cut(s)	8, 52, 68, 248, 297, 314, 517
MspR9I	CCNGG	2 cut(s)	15, 298
MvaI	CCWGG	1 cut(s)	15
MwoI	GCNNNNNNNGC	3 cut(s)	57, 215, 535
NaeI	GCCGGC	1 cut(s)	69
NarI	GGCGCC	1 cut(s)	65
NciI	CCSGG	1 cut(s)	298
NdeII	GATC	1 cut(s)	211
NgoMIV	GCCGGC	1 cut(s)	67
NlaIII	CATG	3 cut(s)	78, 553, 664
NlaIV	GGNNCC	6 cut(s)	12, 66, 111, 166, 213, 543
NmeAIII	GCCGAG	2 cut(s)	27, 41
NmuCI	GTSAC	2 cut(s)	31, 512
NsiI	ATGCAT	1 cut(s)	662
NspI	RCATGY	1 cut(s)	664
PaeI	GCATGC	1 cut(s)	664
PaeR7I	CTCGAG	1 cut(s)	36
PaqCI	CACCTGC	1 cut(s)	639
PcsI	WCGNNNNNNNCGW	1 cut(s)	68
PdiI	GCCGGC	1 cut(s)	69
PfeI	GAWTC	2 cut(s)	310, 622
PflFI	GACNNNGTC	1 cut(s)	257
PkrI	GCNGC	3 cut(s)	90, 158, 220
PleI	GAGTC	3 cut(s)	28, 433, 496
PluTI	GGCGCC	1 cut(s)	68
PpsI	GAGTC	3 cut(s)	28, 433, 496
PpuMI	RGGWCCY	1 cut(s)	109
Psp124BI	GAGCTC	1 cut(s)	436
Psp5II	RGGWCCY	1 cut(s)	109
Psp6I	CCWGG	1 cut(s)	13
PspGI	CCWGG	1 cut(s)	13
PspN4I	GGNNCC	6 cut(s)	12, 66, 111, 166, 213, 543
PspOMI	GGGCCC	1 cut(s)	164
PspPI	GGNCC	3 cut(s)	109, 164, 165
PspPPI	RGGWCCY	1 cut(s)	109
PspXI	VCTCGAGB	1 cut(s)	36
PstNI	CAGNNNCTG	1 cut(s)	538
PsuI	RGATCY	1 cut(s)	211
PsyI	GACNNNGTC	1 cut(s)	257
PvuII	CAGCTG	1 cut(s)	218
RsaI	GTAC	1 cut(s)	543
RsaNI	GTAC	1 cut(s)	542
SacI	GAGCTC	1 cut(s)	436
SatI	GCNGC	3 cut(s)	89, 157, 219
Sau3AI	GATC	1 cut(s)	211
Sau96I	GGNCC	3 cut(s)	109, 164, 165
SchI	GAGTC	3 cut(s)	28, 434, 496
ScrFI	CCNGG	2 cut(s)	15, 298
SduI	GDGCHC	3 cut(s)	48, 168, 436
SfoI	GGCGCC	1 cut(s)	66
Sfr274I	CTCGAG	1 cut(s)	36
SgrAI	CRCCGGYG	1 cut(s)	67
SinI	GGWCC	1 cut(s)	109
SlaI	CTCGAG	1 cut(s)	36
SmlI	CTYRAG	2 cut(s)	36, 92
SmoI	CTYRAG	2 cut(s)	36, 92
SphI	GCATGC	1 cut(s)	664
Sse9I	AATT	3 cut(s)	265, 346, 507
SsiI	CCGC	7 cut(s)	18, 159, 182, 197, 209, 385, 572
SspDI	GGCGCC	1 cut(s)	64
SstI	GAGCTC	1 cut(s)	436
StyD4I	CCNGG	2 cut(s)	13, 296
StyI	CCWWGG	1 cut(s)	473
TaqI	TCGA	4 cut(s)	37, 269, 327, 505
TasI	AATT	3 cut(s)	265, 346, 507
TfiI	GAWTC	2 cut(s)	310, 622
TscAI	CASTG	2 cut(s)	134, 597
TseFI	GTSAC	2 cut(s)	31, 512
TseI	GCWGC	3 cut(s)	88, 156, 218
Tsp45I	GTSAC	2 cut(s)	31, 512
TspDTI	ATGAA	1 cut(s)	354
TspRI	CASTG	2 cut(s)	134, 597
Tth111I	GACNNNGTC	1 cut(s)	257
VpaK11BI	GGWCC	1 cut(s)	109
XapI	RAATTY	2 cut(s)	265, 346
XceI	RCATGY	1 cut(s)	664
XcmI	CCANNNNNNNNNTGG	1 cut(s)	175
XhoI	CTCGAG	1 cut(s)	36
Zsp2I	ATGCAT	1 cut(s)	662

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.