Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0004308

Physical Location & Seq

Genomic Coordinates Reverse (-)

18126412 .. 18128730

Gene Structure 2319 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001604

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGATTTTTATTGTCTGCCCCTCAAACCCAACACTGTTTACTACTGAAGTCCCTCTGTCTCTGCTTCTTGGGTGTTTCTTCTCTCTTCTCCACTTTGAAGCGAAAATCTCCGTGCAATCGACGAGGAAAACTCGCGGGTGGCCGGCGGGGACGAGGCAGATGCAACCGGCACCTGGCGCAAGTGGAGGAGAAGTGACTCGCGGAGGTGGAGCACTCGGCCGGTTCTGCTCGGCCCCGGCGTCATGGTTGGAAGCGCTGCTTGACGACGAAGAAGAGGACCCTTTGAAGCCCACCCAGTGCCTCACCGACCTTCTTGCCGATAACTGCGAGGGGCCCAGTTCGACGGCAGTCGGGTTTGGTTCGGATACGACGGCGGATCCAGCTGCGGCGTTTCTCAGACAGAACAGCTCTCCGGCCGACTTTGTCGGGAATTCGAGTGATGGGTCCGAAGGGTATTTCTCCGGGTTCGGGATTCCGGCCAGCCTCGACTATGTCTCGAACCCGAATTTCAGTAATGTTCCTTCTTCTTCGGCTAATAAGCGGGTTAGGGAGGTGAAAATGGAGGAAGGTGGATTCGAGGAGTTAGGGACTCTAAGGGTTAGGGCAAAGCGAGGTTGTGCTACTCATCCAAGGAGTATTGCTGAAAGGGTCAGGAGGACTCGAATTAGTGACCGGATAAGGAAGCTTCAGGAGCTTGTACCCAACATGGATAAGCAAACTAATACTGCAGATATGTTAGATGAGGCAGTGGAGTATGTGAAGTTTCTTCAGAAGCAGATTCAGGAACTCTCAGAGCATCAGCGCAGGTGCAAATGCATCGCTAAAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0042335 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

277

Amino Acids

30.11

Weight (kDa)

5.79

Isoelectric Point (pI)

44.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	212 - 257	1.7e-09	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	215 - 260	7.4e-06	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35460 AT1G35460 AT4G09180
fragaria_vesca	FvH4_5g31910 FvH4_5g31910 FvH4_5g31910
malus_domestica	MD08G1218800.v1.1 MD15G1407200.v1.1
prunus_persica	Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1
pyrus_communis	pycom08g18940 pycom15g36340
rosa_chinensis	RchiOBHm_Chr7g0227911
rosa_laevigata	RLG00000001604
rosa_multiflora	Rmu_co8004144.1_g000001 Rmu_sc0007737.1_g000003
rosa_roxburghii	Rroxscaffold_3G00231770
rosa_rugosa	Rorug07G0244500.1
rosa_samantha	Rh1CG340400 Rh1DG357700 Rh7AG397700 Rh7BG379200 Rh7CG415900 Rh7DG393200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	795
Acc36I	ACCTGC	1 cut(s)	795
AccB1I	GGYRCC	1 cut(s)	169
AccII	CGCG	2 cut(s)	135, 201
AciI	CCGC	6 cut(s)	135, 146, 201, 374, 386, 541
AclWI	GGATC	2 cut(s)	371, 384
AcoI	YGGCCR	4 cut(s)	140, 217, 414, 477
AcsI	RAATTY	2 cut(s)	430, 505
AcuI	CTGAAG	3 cut(s)	66, 671, 752
AcyI	GRCGYC	1 cut(s)	239
AdeI	CACNNNGTG	1 cut(s)	297
AfaI	GTAC	1 cut(s)	699
AfeI	AGCGCT	1 cut(s)	255
AfiI	CCNNNNNNNGG	2 cut(s)	173, 468
AgsI	TTSAA	2 cut(s)	98, 286
AjnI	CCWGG	1 cut(s)	172
AluBI	AGCT	4 cut(s)	383, 408, 685, 694
AluI	AGCT	4 cut(s)	383, 408, 685, 694
Alw21I	GWGCWC	1 cut(s)	214
Alw26I	GTCTC	2 cut(s)	63, 499
AlwI	GGATC	2 cut(s)	371, 384
Aor51HI	AGCGCT	1 cut(s)	255
AoxI	GGCC	6 cut(s)	140, 217, 231, 332, 414, 477
ApaI	GGGCCC	1 cut(s)	336
ApeKI	GCWGC	2 cut(s)	256, 383
ApoI	RAATTY	2 cut(s)	430, 505
AspLEI	GCGC	3 cut(s)	179, 256, 804
AspS9I	GGNCC	5 cut(s)	232, 277, 332, 333, 444
AsuC2I	CCSGG	2 cut(s)	236, 463
AsuHPI	GGTGA	2 cut(s)	295, 565
AvaII	GGWCC	2 cut(s)	277, 444
BaeGI	GKGCMC	1 cut(s)	336
BamHI	GGATCC	1 cut(s)	376
BanI	GGYRCC	1 cut(s)	169
BanII	GRGCYC	1 cut(s)	336
BarI	GAAGNNNNNNTAC	2 cut(s)	505, 537
Bbv12I	GWGCWC	1 cut(s)	214
BbvI	GCAGC	2 cut(s)	243, 370
BccI	CCATC	1 cut(s)	434
BceAI	ACGGC	2 cut(s)	360, 387
BcgI	CGANNNNNNTGC	5 cut(s)	142, 176, 296, 330, 799
BciT130I	CCWGG	1 cut(s)	174
BciVI	GTATCC	1 cut(s)	358
BcnI	CCSGG	2 cut(s)	236, 463
BcoDI	GTCTC	2 cut(s)	63, 499
BfmI	CTRYAG	1 cut(s)	726
BfoI	RGCGCY	1 cut(s)	257
BfuAI	ACCTGC	1 cut(s)	795
BfuI	GTATCC	1 cut(s)	358
BisI	GCNGC	3 cut(s)	257, 384, 387
BlsI	GCNGC	3 cut(s)	258, 385, 388
Bme1390I	CCNGG	3 cut(s)	174, 236, 463
Bme18I	GGWCC	2 cut(s)	277, 444
BmgT120I	GGNCC	5 cut(s)	232, 277, 332, 333, 444
BmiI	GGNNCC	7 cut(s)	171, 234, 279, 333, 334, 378, 445
BmrFI	CCNGG	3 cut(s)	174, 236, 463
BmrI	ACTGGG	2 cut(s)	289, 330
BmsI	GCATC	3 cut(s)	150, 805, 825
BmuI	ACTGGG	2 cut(s)	289, 330
BoxI	GACNNNNGTC	1 cut(s)	347
BplI	GAGNNNNNCTC	2 cut(s)	115, 147
BpuMI	CCSGG	2 cut(s)	236, 463
BsaHI	GRCGYC	1 cut(s)	239
BsaJI	CCNNGG	2 cut(s)	234, 629
BsaWI	WCCGGW	1 cut(s)	672
BsaXI	ACNNNNNCTCC	2 cut(s)	177, 207
Bsc4I	CCNNNNNNNGG	2 cut(s)	173, 468
Bse118I	RCCGGY	3 cut(s)	142, 166, 219
Bse1I	ACTGG	2 cut(s)	295, 336
BseBI	CCWGG	1 cut(s)	174
BseDI	CCNNGG	2 cut(s)	234, 629
BseGI	GGATG	1 cut(s)	625
BseLI	CCNNNNNNNGG	2 cut(s)	173, 468
BseMII	CTCAG	2 cut(s)	409, 804
BseNI	ACTGG	2 cut(s)	295, 336
BseRI	GAGGAG	2 cut(s)	201, 593
BseSI	GKGCMC	1 cut(s)	336
BseX3I	CGGCCG	2 cut(s)	217, 414
BseXI	GCAGC	2 cut(s)	243, 370
Bsh1236I	CGCG	2 cut(s)	135, 201
Bsh1285I	CGRYCG	2 cut(s)	220, 417
BshFI	GGCC	6 cut(s)	142, 219, 233, 334, 416, 479
BshNI	GGYRCC	1 cut(s)	169
BsiEI	CGRYCG	2 cut(s)	220, 417
BsiHKAI	GWGCWC	1 cut(s)	214
BsiSI	CCGG	8 cut(s)	143, 167, 220, 236, 413, 462, 476, 673
BslFI	GGGAC	3 cut(s)	35, 163, 601
BslI	CCNNNNNNNGG	2 cut(s)	173, 468
BsmAI	GTCTC	2 cut(s)	63, 499
BsmFI	GGGAC	3 cut(s)	35, 163, 601
BsnI	GGCC	6 cut(s)	142, 219, 233, 334, 416, 479
Bsp120I	GGGCCC	1 cut(s)	332
Bsp1286I	GDGCHC	2 cut(s)	214, 336
Bsp143I	GATC	1 cut(s)	376
BspACI	CCGC	6 cut(s)	135, 146, 201, 374, 386, 541
BspANI	GGCC	6 cut(s)	142, 219, 233, 334, 416, 479
BspCNI	CTCAG	2 cut(s)	408, 803
BspFNI	CGCG	2 cut(s)	135, 201
BspLI	GGNNCC	7 cut(s)	171, 234, 279, 333, 334, 378, 445
BspMAI	CTGCAG	1 cut(s)	730
BspMI	ACCTGC	1 cut(s)	795
BspPI	GGATC	2 cut(s)	371, 384
BspT107I	GGYRCC	1 cut(s)	169
BsrFI	RCCGGY	3 cut(s)	142, 166, 219
BsrI	ACTGG	2 cut(s)	295, 336
BssAI	RCCGGY	3 cut(s)	142, 166, 219
BssECI	CCNNGG	2 cut(s)	234, 629
BssMI	GATC	1 cut(s)	376
BssNI	GRCGYC	1 cut(s)	239
BssT1I	CCWWGG	1 cut(s)	629
Bst2UI	CCWGG	1 cut(s)	174
Bst4CI	ACNGT	1 cut(s)	36
Bst6I	CTCTTC	2 cut(s)	90, 267
BstACI	GRCGYC	1 cut(s)	239
BstC8I	GCNNGC	2 cut(s)	144, 481
BstDEI	CTNAG	3 cut(s)	395, 593, 790
BstF5I	GGATG	1 cut(s)	625
BstFNI	CGCG	2 cut(s)	135, 201
BstH2I	RGCGCY	1 cut(s)	257
BstHHI	GCGC	3 cut(s)	179, 256, 804
BstKTI	GATC	1 cut(s)	379
BstMAI	GTCTC	2 cut(s)	63, 499
BstMBI	GATC	1 cut(s)	376
BstMCI	CGRYCG	2 cut(s)	220, 417
BstMWI	GCNNNNNNNGC	4 cut(s)	176, 225, 380, 691
BstNI	CCWGG	1 cut(s)	174
BstPAI	GACNNNNGTC	1 cut(s)	347
BstSCI	CCNGG	3 cut(s)	172, 234, 461
BstSFI	CTRYAG	1 cut(s)	726
BstSLI	GKGCMC	1 cut(s)	336
BstUI	CGCG	2 cut(s)	135, 201
BstV1I	GCAGC	2 cut(s)	243, 370
BstX2I	RGATCY	1 cut(s)	376
BstYI	RGATCY	1 cut(s)	376
BstZI	CGGCCG	2 cut(s)	217, 414
BsuI	GTATCC	1 cut(s)	358
BsuRI	GGCC	6 cut(s)	142, 219, 233, 334, 416, 479
BtgZI	GCGATG	1 cut(s)	802
BtsCI	GGATG	1 cut(s)	625
BtsI	GCAGTG	1 cut(s)	753
BtsIMutI	CAGTG	3 cut(s)	32, 302, 753
BveI	ACCTGC	1 cut(s)	795
Cac8I	GCNNGC	2 cut(s)	144, 481
CfoI	GCGC	3 cut(s)	179, 256, 804
Cfr10I	RCCGGY	3 cut(s)	142, 166, 219
Cfr13I	GGNCC	5 cut(s)	232, 277, 332, 333, 444
CseI	GACGC	1 cut(s)	228
Csp6I	GTAC	1 cut(s)	698
CviAII	CATG	2 cut(s)	243, 706
CviQI	GTAC	1 cut(s)	698
DdeI	CTNAG	3 cut(s)	395, 593, 790
DpnI	GATC	1 cut(s)	378
DpnII	GATC	1 cut(s)	376
DraIII	CACNNNGTG	1 cut(s)	297
EaeI	YGGCCR	4 cut(s)	140, 217, 414, 477
EagI	CGGCCG	2 cut(s)	217, 414
Eam1104I	CTCTTC	2 cut(s)	90, 267
EarI	CTCTTC	2 cut(s)	90, 267
EciI	GGCGGA	1 cut(s)	389
EclXI	CGGCCG	2 cut(s)	217, 414
Eco130I	CCWWGG	1 cut(s)	629
Eco24I	GRGCYC	1 cut(s)	336
Eco47I	GGWCC	2 cut(s)	277, 444
Eco47III	AGCGCT	1 cut(s)	255
Eco52I	CGGCCG	2 cut(s)	217, 414
Eco57I	CTGAAG	3 cut(s)	66, 671, 752
EcoO109I	RGGNCCY	2 cut(s)	277, 332
EcoRI	GAATTC	1 cut(s)	430
EcoRII	CCWGG	1 cut(s)	172
EcoT14I	CCWWGG	1 cut(s)	629
EcoT22I	ATGCAT	1 cut(s)	818
EcoT38I	GRGCYC	1 cut(s)	336
ErhI	CCWWGG	1 cut(s)	629
FaeI	CATG	2 cut(s)	246, 709
FaiI	YATR	5 cut(s)	244, 492, 707, 734, 756
FalI	AAGNNNNNCTT	2 cut(s)	243, 275
FaqI	GGGAC	3 cut(s)	35, 163, 601
FatI	CATG	2 cut(s)	242, 705
FauI	CCCGC	3 cut(s)	128, 139, 534
Fnu4HI	GCNGC	3 cut(s)	257, 384, 387
FokI	GGATG	1 cut(s)	612
FriOI	GRGCYC	1 cut(s)	336
Fsp4HI	GCNGC	3 cut(s)	257, 384, 387
GlaI	GCGC	3 cut(s)	178, 255, 803
GluI	GCNGC	3 cut(s)	257, 384, 387
HaeII	RGCGCY	1 cut(s)	257
HaeIII	GGCC	6 cut(s)	142, 219, 233, 334, 416, 479
HapII	CCGG	8 cut(s)	143, 167, 220, 236, 413, 462, 476, 673
HgaI	GACGC	1 cut(s)	228
HhaI	GCGC	3 cut(s)	179, 256, 804
Hin1I	GRCGYC	1 cut(s)	239
Hin1II	CATG	2 cut(s)	246, 709
Hin6I	GCGC	3 cut(s)	177, 254, 802
HinP1I	GCGC	3 cut(s)	177, 254, 802
HindIII	AAGCTT	1 cut(s)	683
HinfI	GANTC	6 cut(s)	196, 472, 573, 589, 658, 778
HpaII	CCGG	8 cut(s)	143, 167, 220, 236, 413, 462, 476, 673
HphI	GGTGA	2 cut(s)	295, 565
Hpy166II	GTNNAC	1 cut(s)	39
Hpy188I	TCNGA	5 cut(s)	364, 398, 448, 771, 793
Hpy188III	TCNNGA	6 cut(s)	427, 469, 496, 652, 689, 782
Hpy8I	GTNNAC	1 cut(s)	39
Hpy99I	CGWCG	4 cut(s)	124, 269, 346, 373
HpyAV	CCTTC	4 cut(s)	320, 443, 531, 560
HpyCH4III	ACNGT	1 cut(s)	36
HpyCH4V	TGCA	5 cut(s)	115, 163, 728, 810, 816
HpyF10VI	GCNNNNNNNGC	4 cut(s)	176, 225, 380, 691
HpyF3I	CTNAG	3 cut(s)	395, 593, 790
Hsp92I	GRCGYC	1 cut(s)	239
Hsp92II	CATG	2 cut(s)	246, 709
HspAI	GCGC	3 cut(s)	177, 254, 802
KroI	GCCGGC	1 cut(s)	142
KroNI	GCCGGC	1 cut(s)	144
Kzo9I	GATC	1 cut(s)	376
LmnI	GCTCC	2 cut(s)	209, 691
Lsp1109I	GCAGC	2 cut(s)	243, 370
LweI	GCATC	3 cut(s)	150, 805, 825
MaeIII	GTNAC	2 cut(s)	193, 668
MalI	GATC	1 cut(s)	378
MboI	GATC	1 cut(s)	376
MboII	GAAGA	7 cut(s)	70, 77, 281, 284, 516, 519, 758
MflI	RGATCY	1 cut(s)	376
MhlI	GDGCHC	2 cut(s)	214, 336
MluCI	AATT	3 cut(s)	430, 505, 663
MlyI	GAGTC	3 cut(s)	190, 583, 652
MmeI	TCCRAC	1 cut(s)	228
Mph1103I	ATGCAT	1 cut(s)	818
MroNI	GCCGGC	1 cut(s)	142
MspA1I	CMGCKG	1 cut(s)	383
MspI	CCGG	8 cut(s)	143, 167, 220, 236, 413, 462, 476, 673
MspR9I	CCNGG	3 cut(s)	174, 236, 463
MvaI	CCWGG	1 cut(s)	174
MvnI	CGCG	2 cut(s)	135, 201
MwoI	GCNNNNNNNGC	4 cut(s)	176, 225, 380, 691
NaeI	GCCGGC	1 cut(s)	144
NciI	CCSGG	2 cut(s)	236, 463
NdeII	GATC	1 cut(s)	376
NgoMIV	GCCGGC	1 cut(s)	142
NlaIII	CATG	2 cut(s)	246, 709
NlaIV	GGNNCC	7 cut(s)	171, 234, 279, 333, 334, 378, 445
NmeAIII	GCCGAG	2 cut(s)	195, 209
NmuCI	GTSAC	2 cut(s)	193, 668
NsiI	ATGCAT	1 cut(s)	818
PaqCI	CACCTGC	1 cut(s)	795
PcsI	WCGNNNNNNNCGW	1 cut(s)	236
PdiI	GCCGGC	1 cut(s)	144
PfeI	GAWTC	3 cut(s)	472, 573, 778
PflFI	GACNNNGTC	2 cut(s)	422, 491
PkrI	GCNGC	3 cut(s)	258, 385, 388
PleI	GAGTC	3 cut(s)	190, 583, 652
PpsI	GAGTC	3 cut(s)	190, 583, 652
PpuMI	RGGWCCY	1 cut(s)	277
PshAI	GACNNNNGTC	1 cut(s)	347
Psp5II	RGGWCCY	1 cut(s)	277
Psp6I	CCWGG	1 cut(s)	172
PspGI	CCWGG	1 cut(s)	172
PspN4I	GGNNCC	7 cut(s)	171, 234, 279, 333, 334, 378, 445
PspOMI	GGGCCC	1 cut(s)	332
PspPI	GGNCC	5 cut(s)	232, 277, 332, 333, 444
PspPPI	RGGWCCY	1 cut(s)	277
PstI	CTGCAG	1 cut(s)	730
PsuI	RGATCY	1 cut(s)	376
PsyI	GACNNNGTC	2 cut(s)	422, 491
PvuII	CAGCTG	1 cut(s)	383
RsaI	GTAC	1 cut(s)	699
RsaNI	GTAC	1 cut(s)	698
SatI	GCNGC	3 cut(s)	257, 384, 387
Sau3AI	GATC	1 cut(s)	376
Sau96I	GGNCC	5 cut(s)	232, 277, 332, 333, 444
SchI	GAGTC	3 cut(s)	190, 583, 652
ScrFI	CCNGG	3 cut(s)	174, 236, 463
SduI	GDGCHC	2 cut(s)	214, 336
SfaNI	GCATC	3 cut(s)	150, 805, 825
SfcI	CTRYAG	1 cut(s)	726
SinI	GGWCC	2 cut(s)	277, 444
Sse9I	AATT	3 cut(s)	430, 505, 663
SsiI	CCGC	6 cut(s)	135, 146, 201, 374, 386, 541
StyD4I	CCNGG	3 cut(s)	172, 234, 461
StyI	CCWWGG	1 cut(s)	629
TaaI	ACNGT	1 cut(s)	36
TaqI	TCGA	7 cut(s)	119, 341, 434, 486, 497, 576, 661
TasI	AATT	3 cut(s)	430, 505, 663
TauI	GCSGC	1 cut(s)	389
TfiI	GAWTC	3 cut(s)	472, 573, 778
TscAI	CASTG	3 cut(s)	39, 302, 753
TseFI	GTSAC	2 cut(s)	193, 668
TseI	GCWGC	2 cut(s)	256, 383
Tsp45I	GTSAC	2 cut(s)	193, 668
TspGWI	ACGGA	1 cut(s)	100
TspRI	CASTG	3 cut(s)	39, 302, 753
Tth111I	GACNNNGTC	2 cut(s)	422, 491
VpaK11BI	GGWCC	2 cut(s)	277, 444
XapI	RAATTY	2 cut(s)	430, 505
Zsp2I	ATGCAT	1 cut(s)	818

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.