Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0004308

Physical Location & Seq

Genomic Coordinates Forward (+)

28103917 .. 28108005

Gene Structure 4089 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1218800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGCAACGGGCAGCCGGCGGAAGCAGCGGCGGTGAAGTGAGTCAAGGAGGAGGCGGACTCGGGCGGTACAGCTCGGCCCCAGCCACATGGTTAGAAGCGCTGCTGGAAGAGGACGAGGTGGACCCACTGAAGCCGACGCAGTGCTTGACTGAGCTTCTTGCCGACAACACACCTTGTACGACGGTGGATCCAGCTTCGTATGATGCTGCAGCTGGGTACCTTAGTCGACAGAAAAGCTCACCGGCTGATTTTAATGGCGGCGGCGGGGGGTCGGGGGGATATTTCGCCGGGTTTGGAATTCCGGCCGACCTCGACTTTGTGTCGTCGTCGTCGTTGTCCCCAAACAGCCCTTCTTCCTCTGCTAATAAGAGGGTTCGGGAGCACCGGCAACACCACTATTCCTCCGACACACATGTGAAAGTGGAGGAAGGAGGATTGGAGGATTCGGTGGGTTGCAGGGTGAGGGCCAAGCGTGGTTGTGCCACGCATCCCAGGAGCATTGCTGAAAGGGTCAGGAGGACTAAGATCAGTGATCGCATAAGGAAGCTTCAAGAGCTTGTGCCCAGCATGGATAAGCAAACTAATACTGCCGATATGTTAGACGAGGCAGTGGAGTATGTTAAGTTCCTTCAGAAGCAGATTCAGGAACTTTCGGAGCATCAGCGCAGGTGCAAATGCATAGCTAAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0042335 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

231

Amino Acids

24.8

Weight (kDa)

6.33

Isoelectric Point (pI)

54.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	166 - 211	2e-09	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	169 - 214	7e-07	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35460 AT1G35460 AT4G09180
fragaria_vesca	FvH4_5g31910 FvH4_5g31910 FvH4_5g31910
malus_domestica	MD08G1218800.v1.1 MD15G1407200.v1.1
prunus_persica	Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1 Prupe.1G554600_v2.0.a1
pyrus_communis	pycom08g18940 pycom15g36340
rosa_chinensis	RchiOBHm_Chr7g0227911
rosa_laevigata	RLG00000001604
rosa_multiflora	Rmu_co8004144.1_g000001 Rmu_sc0007737.1_g000003
rosa_roxburghii	Rroxscaffold_3G00231770
rosa_rugosa	Rorug07G0244500.1
rosa_samantha	Rh1CG340400 Rh1DG357700 Rh7AG397700 Rh7BG379200 Rh7CG415900 Rh7DG393200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	657
Acc36I	ACCTGC	1 cut(s)	657
Acc65I	GGTACC	1 cut(s)	216
AccB1I	GGYRCC	1 cut(s)	216
AccI	GTMKAC	1 cut(s)	226
AciI	CCGC	8 cut(s)	18, 27, 30, 54, 64, 258, 261, 264
AclWI	GGATC	2 cut(s)	182, 195
AcoI	YGGCCR	1 cut(s)	303
AcsI	RAATTY	1 cut(s)	297
AcuI	CTGAAG	2 cut(s)	149, 614
AfaI	GTAC	3 cut(s)	68, 178, 218
AfeI	AGCGCT	1 cut(s)	99
AflIII	ACRYGT	1 cut(s)	412
AgsI	TTSAA	1 cut(s)	551
AhdI	GACNNNNNGTC	1 cut(s)	319
AjnI	CCWGG	1 cut(s)	491
AjuI	GAANNNNNNNTTGG	2 cut(s)	334, 366
AleI	CACNNNNGTG	1 cut(s)	413
AluBI	AGCT	8 cut(s)	72, 154, 194, 212, 237, 547, 556, 683
AluI	AGCT	8 cut(s)	72, 154, 194, 212, 237, 547, 556, 683
Alw21I	GWGCWC	1 cut(s)	384
AlwI	GGATC	2 cut(s)	182, 195
Ama87I	CYCGRG	1 cut(s)	59
Aor51HI	AGCGCT	1 cut(s)	99
AoxI	GGCC	3 cut(s)	75, 303, 465
ApeKI	GCWGC	5 cut(s)	11, 24, 100, 206, 209
ApoI	RAATTY	1 cut(s)	297
ArsI	GACNNNNNNTTYG	2 cut(s)	299, 331
Asp718I	GGTACC	1 cut(s)	216
AspLEI	GCGC	2 cut(s)	100, 666
AspS9I	GGNCC	3 cut(s)	76, 121, 465
AsuC2I	CCSGG	1 cut(s)	289
AsuHPI	GGTGA	3 cut(s)	44, 231, 472
AvaI	CYCGRG	1 cut(s)	59
AvaII	GGWCC	1 cut(s)	121
BaeGI	GKGCMC	1 cut(s)	564
BaeI	ACNNNNGTAYC	2 cut(s)	208, 241
BamHI	GGATCC	1 cut(s)	187
BanI	GGYRCC	1 cut(s)	216
Bbv12I	GWGCWC	1 cut(s)	384
BbvI	GCAGC	5 cut(s)	23, 36, 87, 193, 221
BciT130I	CCWGG	1 cut(s)	493
BcnI	CCSGG	1 cut(s)	289
BfmI	CTRYAG	1 cut(s)	207
BfoI	RGCGCY	1 cut(s)	101
BfuAI	ACCTGC	1 cut(s)	657
BisI	GCNGC	8 cut(s)	12, 25, 28, 101, 207, 210, 259, 262
BlsI	GCNGC	8 cut(s)	13, 26, 29, 102, 208, 211, 260, 263
Bme1390I	CCNGG	2 cut(s)	289, 493
Bme18I	GGWCC	1 cut(s)	121
BmeRI	GACNNNNNGTC	1 cut(s)	319
BmeT110I	CYCGRG	1 cut(s)	59
BmgT120I	GGNCC	3 cut(s)	76, 121, 465
BmiI	GGNNCC	4 cut(s)	78, 123, 189, 218
BmrFI	CCNGG	2 cut(s)	289, 493
BmsI	GCATC	3 cut(s)	193, 496, 667
BplI	GAGNNNNNCTC	2 cut(s)	42, 74
BpuMI	CCSGG	1 cut(s)	289
BsaJI	CCNNGG	1 cut(s)	491
BsaXI	ACNNNNNCTCC	2 cut(s)	386, 416
Bse118I	RCCGGY	3 cut(s)	14, 241, 384
Bse3DI	GCAATG	1 cut(s)	498
BseBI	CCWGG	1 cut(s)	493
BseDI	CCNNGG	1 cut(s)	491
BseGI	GGATG	1 cut(s)	487
BseMI	GCAATG	1 cut(s)	498
BseMII	CTCAG	1 cut(s)	141
BseRI	GAGGAG	1 cut(s)	63
BseSI	GKGCMC	1 cut(s)	564
BseX3I	CGGCCG	1 cut(s)	303
BseXI	GCAGC	5 cut(s)	23, 36, 87, 193, 221
BseYI	CCCAGC	3 cut(s)	79, 212, 563
Bsh1285I	CGRYCG	1 cut(s)	306
BshFI	GGCC	3 cut(s)	77, 305, 467
BshNI	GGYRCC	1 cut(s)	216
BsiEI	CGRYCG	1 cut(s)	306
BsiHKAI	GWGCWC	1 cut(s)	384
BsiHKCI	CYCGRG	1 cut(s)	59
BsiSI	CCGG	5 cut(s)	15, 242, 288, 302, 385
BslFI	GGGAC	1 cut(s)	322
BsmFI	GGGAC	1 cut(s)	322
BsnI	GGCC	3 cut(s)	77, 305, 467
BsoBI	CYCGRG	1 cut(s)	59
Bsp1286I	GDGCHC	2 cut(s)	384, 564
Bsp143I	GATC	3 cut(s)	187, 525, 532
BspACI	CCGC	8 cut(s)	18, 27, 30, 54, 64, 258, 261, 264
BspANI	GGCC	3 cut(s)	77, 305, 467
BspCNI	CTCAG	1 cut(s)	142
BspLI	GGNNCC	4 cut(s)	78, 123, 189, 218
BspMAI	CTGCAG	1 cut(s)	211
BspMI	ACCTGC	1 cut(s)	657
BspPI	GGATC	2 cut(s)	182, 195
BspT107I	GGYRCC	1 cut(s)	216
BsrDI	GCAATG	1 cut(s)	498
BsrFI	RCCGGY	3 cut(s)	14, 241, 384
BssAI	RCCGGY	3 cut(s)	14, 241, 384
BssECI	CCNNGG	1 cut(s)	491
BssMI	GATC	3 cut(s)	187, 525, 532
Bst2UI	CCWGG	1 cut(s)	493
Bst4CI	ACNGT	1 cut(s)	184
Bst6I	CTCTTC	1 cut(s)	102
BstC8I	GCNNGC	1 cut(s)	16
BstDEI	CTNAG	3 cut(s)	150, 221, 522
BstF5I	GGATG	1 cut(s)	487
BstH2I	RGCGCY	1 cut(s)	101
BstHHI	GCGC	2 cut(s)	100, 666
BstKTI	GATC	3 cut(s)	190, 528, 535
BstMBI	GATC	3 cut(s)	187, 525, 532
BstMCI	CGRYCG	1 cut(s)	306
BstMWI	GCNNNNNNNGC	2 cut(s)	24, 553
BstNI	CCWGG	1 cut(s)	493
BstNSI	RCATGY	1 cut(s)	416
BstSCI	CCNGG	2 cut(s)	287, 491
BstSFI	CTRYAG	1 cut(s)	207
BstSLI	GKGCMC	1 cut(s)	564
BstV1I	GCAGC	5 cut(s)	23, 36, 87, 193, 221
BstX2I	RGATCY	1 cut(s)	187
BstXI	CCANNNNNNTGG	1 cut(s)	87
BstYI	RGATCY	1 cut(s)	187
BstZI	CGGCCG	1 cut(s)	303
BsuRI	GGCC	3 cut(s)	77, 305, 467
BtsCI	GGATG	1 cut(s)	487
BtsI	GCAGTG	2 cut(s)	146, 615
BtsIMutI	CAGTG	4 cut(s)	125, 146, 535, 615
BveI	ACCTGC	1 cut(s)	657
Cac8I	GCNNGC	1 cut(s)	16
CfoI	GCGC	2 cut(s)	100, 666
Cfr10I	RCCGGY	3 cut(s)	14, 241, 384
Cfr13I	GGNCC	3 cut(s)	76, 121, 465
CseI	GACGC	1 cut(s)	145
Csp6I	GTAC	3 cut(s)	67, 177, 217
CviAII	CATG	3 cut(s)	87, 413, 568
CviQI	GTAC	3 cut(s)	67, 177, 217
DdeI	CTNAG	3 cut(s)	150, 221, 522
DpnI	GATC	3 cut(s)	189, 527, 534
DpnII	GATC	3 cut(s)	187, 525, 532
DriI	GACNNNNNGTC	1 cut(s)	319
EaeI	YGGCCR	1 cut(s)	303
EagI	CGGCCG	1 cut(s)	303
Eam1104I	CTCTTC	1 cut(s)	102
Eam1105I	GACNNNNNGTC	1 cut(s)	319
EarI	CTCTTC	1 cut(s)	102
EciI	GGCGGA	2 cut(s)	33, 69
EclXI	CGGCCG	1 cut(s)	303
Eco47I	GGWCC	1 cut(s)	121
Eco47III	AGCGCT	1 cut(s)	99
Eco52I	CGGCCG	1 cut(s)	303
Eco57I	CTGAAG	2 cut(s)	149, 614
Eco88I	CYCGRG	1 cut(s)	59
EcoRI	GAATTC	1 cut(s)	297
EcoRII	CCWGG	1 cut(s)	491
EcoT22I	ATGCAT	1 cut(s)	680
FaeI	CATG	3 cut(s)	90, 416, 571
FaiI	YATR	8 cut(s)	88, 201, 414, 539, 569, 596, 618, 680
FaqI	GGGAC	1 cut(s)	322
FatI	CATG	3 cut(s)	86, 412, 567
FauI	CCCGC	1 cut(s)	257
FblI	GTMKAC	1 cut(s)	226
Fnu4HI	GCNGC	8 cut(s)	12, 25, 28, 101, 207, 210, 259, 262
FokI	GGATG	1 cut(s)	474
Fsp4HI	GCNGC	8 cut(s)	12, 25, 28, 101, 207, 210, 259, 262
GlaI	GCGC	2 cut(s)	99, 665
GluI	GCNGC	8 cut(s)	12, 25, 28, 101, 207, 210, 259, 262
GsaI	CCCAGC	3 cut(s)	83, 216, 567
HaeII	RGCGCY	1 cut(s)	101
HaeIII	GGCC	3 cut(s)	77, 305, 467
HapII	CCGG	5 cut(s)	15, 242, 288, 302, 385
HgaI	GACGC	1 cut(s)	145
HhaI	GCGC	2 cut(s)	100, 666
Hin1II	CATG	3 cut(s)	90, 416, 571
Hin6I	GCGC	2 cut(s)	98, 664
HinP1I	GCGC	2 cut(s)	98, 664
HincII	GTYRAC	1 cut(s)	227
HindII	GTYRAC	1 cut(s)	227
HindIII	AAGCTT	1 cut(s)	545
HinfI	GANTC	4 cut(s)	40, 57, 443, 640
HpaII	CCGG	5 cut(s)	15, 242, 288, 302, 385
HphI	GGTGA	3 cut(s)	44, 231, 472
Hpy166II	GTNNAC	2 cut(s)	121, 227
Hpy188I	TCNGA	3 cut(s)	406, 633, 655
Hpy188III	TCNNGA	4 cut(s)	377, 514, 551, 644
Hpy8I	GTNNAC	2 cut(s)	121, 227
Hpy99I	CGWCG	5 cut(s)	139, 184, 328, 331, 334
HpyAV	CCTTC	3 cut(s)	360, 422, 638
HpyCH4III	ACNGT	1 cut(s)	184
HpyCH4V	TGCA	5 cut(s)	4, 209, 456, 672, 678
HpyF10VI	GCNNNNNNNGC	2 cut(s)	24, 553
HpyF3I	CTNAG	3 cut(s)	150, 221, 522
Hsp92II	CATG	3 cut(s)	90, 416, 571
HspAI	GCGC	2 cut(s)	98, 664
KpnI	GGTACC	1 cut(s)	220
KroI	GCCGGC	1 cut(s)	14
KroNI	GCCGGC	1 cut(s)	16
Kzo9I	GATC	3 cut(s)	187, 525, 532
LmnI	GCTCC	3 cut(s)	379, 495, 655
Lsp1109I	GCAGC	5 cut(s)	23, 36, 87, 193, 221
LweI	GCATC	3 cut(s)	193, 496, 667
MalI	GATC	3 cut(s)	189, 527, 534
MboI	GATC	3 cut(s)	187, 525, 532
MboII	GAAGA	2 cut(s)	119, 345
MflI	RGATCY	1 cut(s)	187
MhlI	GDGCHC	2 cut(s)	384, 564
MluCI	AATT	1 cut(s)	297
MlyI	GAGTC	2 cut(s)	49, 51
MmeI	TCCRAC	1 cut(s)	429
Mph1103I	ATGCAT	1 cut(s)	680
MroNI	GCCGGC	1 cut(s)	14
MseI	TTAA	2 cut(s)	252, 621
MslI	CAYNNNNRTG	1 cut(s)	413
MspA1I	CMGCKG	2 cut(s)	27, 212
MspI	CCGG	5 cut(s)	15, 242, 288, 302, 385
MspR9I	CCNGG	2 cut(s)	289, 493
MvaI	CCWGG	1 cut(s)	493
MwoI	GCNNNNNNNGC	2 cut(s)	24, 553
NaeI	GCCGGC	1 cut(s)	16
NciI	CCSGG	1 cut(s)	289
NdeII	GATC	3 cut(s)	187, 525, 532
NgoMIV	GCCGGC	1 cut(s)	14
NlaIII	CATG	3 cut(s)	90, 416, 571
NlaIV	GGNNCC	4 cut(s)	78, 123, 189, 218
NmeAIII	GCCGAG	1 cut(s)	53
NsiI	ATGCAT	1 cut(s)	680
NspI	RCATGY	1 cut(s)	416
OliI	CACNNNNGTG	1 cut(s)	413
PaqCI	CACCTGC	1 cut(s)	657
PciI	ACATGT	1 cut(s)	412
PcsI	WCGNNNNNNNCGW	1 cut(s)	329
PdiI	GCCGGC	1 cut(s)	16
PfeI	GAWTC	2 cut(s)	443, 640
PkrI	GCNGC	8 cut(s)	13, 26, 29, 102, 208, 211, 260, 263
PleI	GAGTC	2 cut(s)	48, 51
PpsI	GAGTC	2 cut(s)	48, 51
PscI	ACATGT	1 cut(s)	412
Psp6I	CCWGG	1 cut(s)	491
PspFI	CCCAGC	3 cut(s)	79, 212, 563
PspGI	CCWGG	1 cut(s)	491
PspN4I	GGNNCC	4 cut(s)	78, 123, 189, 218
PspPI	GGNCC	3 cut(s)	76, 121, 465
PsrI	GAACNNNNNNTAC	2 cut(s)	608, 640
PstI	CTGCAG	1 cut(s)	211
PsuI	RGATCY	1 cut(s)	187
PvuII	CAGCTG	1 cut(s)	212
RsaI	GTAC	3 cut(s)	68, 178, 218
RsaNI	GTAC	3 cut(s)	67, 177, 217
RseI	CAYNNNNRTG	1 cut(s)	413
SalI	GTCGAC	1 cut(s)	225
SaqAI	TTAA	2 cut(s)	252, 621
SatI	GCNGC	8 cut(s)	12, 25, 28, 101, 207, 210, 259, 262
Sau3AI	GATC	3 cut(s)	187, 525, 532
Sau96I	GGNCC	3 cut(s)	76, 121, 465
SchI	GAGTC	2 cut(s)	49, 51
ScrFI	CCNGG	2 cut(s)	289, 493
SduI	GDGCHC	2 cut(s)	384, 564
SfaNI	GCATC	3 cut(s)	193, 496, 667
SfcI	CTRYAG	1 cut(s)	207
SinI	GGWCC	1 cut(s)	121
SmiMI	CAYNNNNRTG	1 cut(s)	413
Sse9I	AATT	1 cut(s)	297
SsiI	CCGC	8 cut(s)	18, 27, 30, 54, 64, 258, 261, 264
StyD4I	CCNGG	2 cut(s)	287, 491
TaaI	ACNGT	1 cut(s)	184
TaqI	TCGA	2 cut(s)	226, 312
TasI	AATT	1 cut(s)	297
TauI	GCSGC	3 cut(s)	30, 261, 264
TfiI	GAWTC	2 cut(s)	443, 640
Tru1I	TTAA	2 cut(s)	252, 621
Tru9I	TTAA	2 cut(s)	252, 621
TscAI	CASTG	4 cut(s)	132, 146, 535, 615
TseI	GCWGC	5 cut(s)	11, 24, 100, 206, 209
TspRI	CASTG	4 cut(s)	132, 146, 535, 615
VpaK11BI	GGWCC	1 cut(s)	121
XapI	RAATTY	1 cut(s)	297
XceI	RCATGY	1 cut(s)	416
XmiI	GTMKAC	1 cut(s)	226
Zsp2I	ATGCAT	1 cut(s)	680

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.