AT1G35720

Annexin D1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0004650
Physical Location & Seq
Forward (+)
13225168 .. 13227239
2072 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G35720.1

Sequence Viewer

Length: 954 bp
ATGGCGACTCTTAAGGTTTCTGATTCTGTTCCTGCTCCTTCTGATGATGCTGAGCAATTGAGAACCGCTTTTGAAGGATGGGGTACGAACGAGGACTTGATCATATCAATCTTGGCTCACAGAAGTGCTGAACAGAGGAAAGTCATCAGGCAAGCATACCACGAAACCTACGGCGAAGACCTTCTCAAGACTCTTGACAAGGAGCTCTCTAACGATTTCGAGAGAGCTATCTTGTTGTGGACTCTTGAACCCGGTGAGCGTGATGCTTTATTGGCTAATGAAGCTACAAAAAGATGGACTTCAAGCAACCAAGTTCTTATGGAAGTTGCTTGCACAAGGACATCAACGCAGCTGCTTCACGCTAGGCAAGCTTACCATGCTCGCTACAAGAAGTCTCTTGAAGAGGACGTTGCTCACCACACTACCGGTGACTTCAGAAAGCTTTTGGTTTCTCTTGTTACCTCATACAGGTACGAAGGAGATGAAGTGAACATGACATTGGCTAAGCAAGAAGCTAAGCTGGTCCATGAGAAAATCAAGGACAAGCACTACAATGATGAGGATGTTATTAGAATCTTGTCCACAAGAAGCAAAGCTCAGATCAATGCTACTTTTAACCGTTACCAAGATGATCATGGCGAGGAAATTCTCAAGAGTCTTGAGGAAGGAGATGATGATGACAAGTTCCTTGCACTTTTGAGGTCAACCATTCAGTGCTTGACAAGACCAGAGCTTTACTTTGTCGATGTTCTTCGTTCAGCAATCAACAAAACTGGAACTGATGAAGGAGCACTCACTAGAATTGTGACCACAAGAGCTGAGATTGACTTGAAGGTCATTGGAGAGGAGTACCAGCGCAGGAACAGCATTCCTTTGGAGAAAGCTATTACCAAAGACACTCGTGGAGATTACGAGAAGATGCTCGTCGCACTTCTCGGTGAAGATGATGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0001101 GO:0003674 GO:0003824 GO:0004601 GO:0005488 GO:0005507 GO:0005509 GO:0005515 GO:0005524 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005829 GO:0005886 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006816 GO:0006950 GO:0006970 GO:0008144 GO:0008150 GO:0008152 GO:0008270 GO:0009266 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009636 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0015672 GO:0016020 GO:0016209 GO:0016491 GO:0016684 GO:0017076 GO:0030001 GO:0030054 GO:0030312 GO:0030554 GO:0031090 GO:0032553 GO:0032555 GO:0032559 GO:0033993 GO:0034220 GO:0035639 GO:0036094 GO:0042221 GO:0042802 GO:0042803 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0046983 GO:0048046 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055044 GO:0055085 GO:0055114 GO:0070588 GO:0070838 GO:0070887 GO:0071435 GO:0071804 GO:0071805 GO:0071944 GO:0072511 GO:0097159 GO:0097237 GO:0097305 GO:0097367 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098754 GO:0098805 GO:0098869 GO:1901265 GO:1901363 GO:1901700 GO:1990748
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Annexin

Protein Analysis

317

Amino Acids

36.2

Weight (kDa)

5.21

Isoelectric Point (pI)

37.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Annexin PF00191 16 - 79 1.2e-23 Annexin
Annexin PF00191 88 - 152 1.8e-17 Annexin
Annexin PF00191 170 - 222 9e-10 Annexin
Annexin PF00191 246 - 311 6.7e-20 Annexin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 833
AciI CCGC 1 cut(s) 66
AcsI RAATTY 1 cut(s) 645
AcuI CTGAAG 1 cut(s) 418
AfaI GTAC 3 cut(s) 85, 473, 851
AfiI CCNNNNNNNGG 1 cut(s) 468
AflII CTTAAG 1 cut(s) 11
AgeI ACCGGT 1 cut(s) 425
AgsI TTSAA 5 cut(s) 74, 248, 303, 401, 832
AjuI GAANNNNNNNTTGG 2 cut(s) 482, 514
AleI CACNNNNGTG 1 cut(s) 123
Alw21I GWGCWC 2 cut(s) 207, 793
Alw26I GTCTC 1 cut(s) 399
ApeKI GCWGC 2 cut(s) 349, 352
ApoI RAATTY 1 cut(s) 645
AsiGI ACCGGT 1 cut(s) 425
Asp700I GAANNNNTTC 1 cut(s) 180
AspLEI GCGC 1 cut(s) 858
AspS9I GGNCC 1 cut(s) 523
AsuC2I CCSGG 1 cut(s) 252
AsuHPI GGTGA 4 cut(s) 266, 407, 440, 950
AvaII GGWCC 1 cut(s) 523
BanII GRGCYC 1 cut(s) 207
BauI CACGAG 1 cut(s) 900
BbsI GAAGAC 1 cut(s) 183
Bbv12I GWGCWC 2 cut(s) 207, 793
BbvI GCAGC 2 cut(s) 339, 361
BccI CCATC 2 cut(s) 72, 288
BceAI ACGGC 1 cut(s) 187
BclI TGATCA 2 cut(s) 99, 631
BcnI CCSGG 1 cut(s) 252
BcoDI GTCTC 1 cut(s) 399
BfaI CTAG 2 cut(s) 363, 798
BfrI CTTAAG 1 cut(s) 11
BisI GCNGC 2 cut(s) 350, 353
BlpI GCTNAGC 3 cut(s) 51, 504, 516
BlsI GCNGC 2 cut(s) 351, 354
Bme1390I CCNGG 1 cut(s) 252
Bme18I GGWCC 1 cut(s) 523
BmgT120I GGNCC 1 cut(s) 523
BmrFI CCNGG 1 cut(s) 252
BmsI GCATC 4 cut(s) 37, 253, 909, 937
BpiI GAAGAC 1 cut(s) 183
Bpu1102I GCTNAGC 3 cut(s) 51, 504, 516
BpuEI CTTGAG 3 cut(s) 170, 635, 680
BpuMI CCSGG 1 cut(s) 252
BsaWI WCCGGW 1 cut(s) 425
BsaXI ACNNNNNCTCC 2 cut(s) 471, 501
Bsc4I CCNNNNNNNGG 1 cut(s) 468
Bse118I RCCGGY 1 cut(s) 425
Bse1I ACTGG 1 cut(s) 778
BseGI GGATG 2 cut(s) 83, 568
BseLI CCNNNNNNNGG 1 cut(s) 468
BseMII CTCAG 3 cut(s) 42, 611, 810
BseNI ACTGG 1 cut(s) 778
BseRI GAGGAG 1 cut(s) 860
BseXI GCAGC 2 cut(s) 339, 361
BshTI ACCGGT 1 cut(s) 425
BsiHKAI GWGCWC 2 cut(s) 207, 793
BsiSI CCGG 2 cut(s) 252, 426
BslI CCNNNNNNNGG 1 cut(s) 468
BsmAI GTCTC 1 cut(s) 399
BsmI GAATGC 1 cut(s) 867
Bsp1286I GDGCHC 2 cut(s) 207, 793
Bsp143I GATC 3 cut(s) 99, 600, 631
Bsp1720I GCTNAGC 3 cut(s) 51, 504, 516
BspACI CCGC 1 cut(s) 66
BspCNI CTCAG 3 cut(s) 43, 610, 811
BspTI CTTAAG 1 cut(s) 11
BsrFI RCCGGY 1 cut(s) 425
BsrI ACTGG 1 cut(s) 778
BssAI RCCGGY 1 cut(s) 425
BssMI GATC 3 cut(s) 99, 600, 631
BssSI CACGAG 1 cut(s) 900
Bst2BI CACGAG 1 cut(s) 900
Bst4CI ACNGT 1 cut(s) 620
Bst6I CTCTTC 1 cut(s) 396
BstAFI CTTAAG 1 cut(s) 11
BstC8I GCNNGC 4 cut(s) 153, 331, 369, 382
BstDEI CTNAG 5 cut(s) 51, 504, 516, 597, 819
BstENI CCTNNNNNAGG 1 cut(s) 466
BstF5I GGATG 2 cut(s) 83, 568
BstHHI GCGC 1 cut(s) 858
BstKTI GATC 3 cut(s) 102, 603, 634
BstMAI GTCTC 1 cut(s) 399
BstMBI GATC 3 cut(s) 99, 600, 631
BstMWI GCNNNNNNNGC 5 cut(s) 272, 281, 368, 377, 864
BstSCI CCNGG 1 cut(s) 250
BstV1I GCAGC 2 cut(s) 339, 361
BstV2I GAAGAC 1 cut(s) 183
BtsCI GGATG 2 cut(s) 83, 568
BtsIMutI CAGTG 1 cut(s) 719
Cac8I GCNNGC 4 cut(s) 153, 331, 369, 382
CfoI GCGC 1 cut(s) 858
Cfr10I RCCGGY 1 cut(s) 425
Cfr13I GGNCC 1 cut(s) 523
Csp6I GTAC 3 cut(s) 84, 472, 850
CspAI ACCGGT 1 cut(s) 425
CviAII CATG 4 cut(s) 377, 493, 527, 635
CviQI GTAC 3 cut(s) 84, 472, 850
DdeI CTNAG 5 cut(s) 51, 504, 516, 597, 819
DpnI GATC 3 cut(s) 101, 602, 633
DpnII GATC 3 cut(s) 99, 600, 631
DrdI GACNNNNNNGTC 1 cut(s) 833
DseDI GACNNNNNNGTC 1 cut(s) 833
Eam1104I CTCTTC 1 cut(s) 396
EarI CTCTTC 1 cut(s) 396
Ecl136II GAGCTC 1 cut(s) 205
Eco24I GRGCYC 1 cut(s) 207
Eco47I GGWCC 1 cut(s) 523
Eco53kI GAGCTC 1 cut(s) 205
Eco57I CTGAAG 1 cut(s) 418
EcoICRI GAGCTC 1 cut(s) 205
EcoNI CCTNNNNNAGG 1 cut(s) 466
EcoT38I GRGCYC 1 cut(s) 207
FaeI CATG 4 cut(s) 380, 496, 530, 638
FaiI YATR 8 cut(s) 104, 157, 320, 378, 466, 494, 528, 636
FalI AAGNNNNNCTT 2 cut(s) 283, 315
FatI CATG 4 cut(s) 376, 492, 526, 634
FbaI TGATCA 2 cut(s) 99, 631
Fnu4HI GCNGC 2 cut(s) 350, 353
FokI GGATG 2 cut(s) 90, 575
FriOI GRGCYC 1 cut(s) 207
Fsp4HI GCNGC 2 cut(s) 350, 353
FspBI CTAG 2 cut(s) 363, 798
GlaI GCGC 1 cut(s) 857
GluI GCNGC 2 cut(s) 350, 353
HapII CCGG 2 cut(s) 252, 426
HhaI GCGC 1 cut(s) 858
Hin1II CATG 4 cut(s) 380, 496, 530, 638
Hin6I GCGC 1 cut(s) 856
HinP1I GCGC 1 cut(s) 856
HincII GTYRAC 1 cut(s) 705
HindII GTYRAC 1 cut(s) 705
HindIII AAGCTT 2 cut(s) 369, 440
HinfI GANTC 6 cut(s) 7, 23, 190, 241, 573, 655
HpaII CCGG 2 cut(s) 252, 426
HphI GGTGA 4 cut(s) 266, 407, 440, 950
Hpy166II GTNNAC 4 cut(s) 240, 490, 582, 705
Hpy188I TCNGA 4 cut(s) 22, 43, 437, 600
Hpy188III TCNNGA 7 cut(s) 187, 194, 220, 245, 398, 652, 659
Hpy8I GTNNAC 4 cut(s) 240, 490, 582, 705
Hpy99I CGWCG 1 cut(s) 929
HpyAV CCTTC 7 cut(s) 48, 68, 191, 470, 659, 779, 826
HpyCH4III ACNGT 1 cut(s) 620
HpyCH4IV ACGT 1 cut(s) 408
HpyCH4V TGCA 2 cut(s) 333, 692
HpyF10VI GCNNNNNNNGC 5 cut(s) 272, 281, 368, 377, 864
HpyF3I CTNAG 5 cut(s) 51, 504, 516, 597, 819
HpySE526I ACGT 1 cut(s) 408
Hsp92II CATG 4 cut(s) 380, 496, 530, 638
HspAI GCGC 1 cut(s) 856
Ksp22I TGATCA 2 cut(s) 99, 631
Kzo9I GATC 3 cut(s) 99, 600, 631
LmnI GCTCC 3 cut(s) 40, 202, 788
Lsp1109I GCAGC 2 cut(s) 339, 361
LweI GCATC 4 cut(s) 37, 253, 909, 937
MaeI CTAG 2 cut(s) 363, 798
MaeII ACGT 1 cut(s) 408
MaeIII GTNAC 4 cut(s) 428, 457, 620, 805
MalI GATC 3 cut(s) 101, 602, 633
MboI GATC 3 cut(s) 99, 600, 631
MboII GAAGA 5 cut(s) 188, 413, 743, 928, 953
MfeI CAATTG 1 cut(s) 56
MhlI GDGCHC 2 cut(s) 207, 793
MluCI AATT 3 cut(s) 56, 645, 801
MlyI GAGTC 3 cut(s) 184, 235, 664
MnlI CCTC 9 cut(s) 85, 129, 397, 472, 553, 634, 655, 693, 838
MroXI GAANNNNTTC 1 cut(s) 180
MseI TTAA 3 cut(s) 12, 615, 952
MslI CAYNNNNRTG 2 cut(s) 123, 552
MspA1I CMGCKG 1 cut(s) 352
MspCI CTTAAG 1 cut(s) 11
MspI CCGG 2 cut(s) 252, 426
MspR9I CCNGG 1 cut(s) 252
MunI CAATTG 1 cut(s) 56
Mva1269I GAATGC 1 cut(s) 867
MwoI GCNNNNNNNGC 5 cut(s) 272, 281, 368, 377, 864
NciI CCSGG 1 cut(s) 252
NdeII GATC 3 cut(s) 99, 600, 631
NlaIII CATG 4 cut(s) 380, 496, 530, 638
NmuCI GTSAC 2 cut(s) 428, 805
OliI CACNNNNGTG 1 cut(s) 123
PctI GAATGC 1 cut(s) 867
PdmI GAANNNNTTC 1 cut(s) 180
PfeI GAWTC 2 cut(s) 23, 573
PinAI ACCGGT 1 cut(s) 425
PkrI GCNGC 2 cut(s) 351, 354
PleI GAGTC 3 cut(s) 184, 235, 663
PpsI GAGTC 3 cut(s) 184, 235, 663
Psp124BI GAGCTC 1 cut(s) 207
PspPI GGNCC 1 cut(s) 523
PvuII CAGCTG 1 cut(s) 352
RsaI GTAC 3 cut(s) 85, 473, 851
RsaNI GTAC 3 cut(s) 84, 472, 850
RseI CAYNNNNRTG 2 cut(s) 123, 552
SacI GAGCTC 1 cut(s) 207
SaqAI TTAA 3 cut(s) 12, 615, 952
SatI GCNGC 2 cut(s) 350, 353
Sau3AI GATC 3 cut(s) 99, 600, 631
Sau96I GGNCC 1 cut(s) 523
SchI GAGTC 3 cut(s) 184, 235, 664
ScrFI CCNGG 1 cut(s) 252
SduI GDGCHC 2 cut(s) 207, 793
SfaNI GCATC 4 cut(s) 37, 253, 909, 937
SinI GGWCC 1 cut(s) 523
SmiMI CAYNNNNRTG 2 cut(s) 123, 552
SmlI CTYRAG 4 cut(s) 11, 185, 650, 659
SmoI CTYRAG 4 cut(s) 11, 185, 650, 659
Sse9I AATT 3 cut(s) 56, 645, 801
SsiI CCGC 1 cut(s) 66
SspMI CTAG 2 cut(s) 363, 798
SstI GAGCTC 1 cut(s) 207
StyD4I CCNGG 1 cut(s) 250
TaaI ACNGT 1 cut(s) 620
TaiI ACGT 1 cut(s) 411
TaqI TCGA 2 cut(s) 219, 744
TasI AATT 3 cut(s) 56, 645, 801
TfiI GAWTC 2 cut(s) 23, 573
Tru1I TTAA 3 cut(s) 12, 615, 952
Tru9I TTAA 3 cut(s) 12, 615, 952
TscAI CASTG 1 cut(s) 719
TseFI GTSAC 2 cut(s) 428, 805
TseI GCWGC 2 cut(s) 349, 352
Tsp45I GTSAC 2 cut(s) 428, 805
TspDTI ATGAA 3 cut(s) 294, 498, 798
TspRI CASTG 1 cut(s) 719
Vha464I CTTAAG 1 cut(s) 11
VpaK11BI GGWCC 1 cut(s) 523
XagI CCTNNNNNAGG 1 cut(s) 466
XapI RAATTY 1 cut(s) 645
XcmI CCANNNNNNNNNTGG 1 cut(s) 632
XmnI GAANNNNTTC 1 cut(s) 180
XspI CTAG 2 cut(s) 363, 798
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.