Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000431.1

Orthogroup ID

OG0004650

Physical Location & Seq

Genomic Coordinates Forward (+)

175908 .. 177045

Gene Structure 1138 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000431.1_g000032.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

atgtaccagcgagctgtgctgctgtggacactgcatccttctgagcgtgatgcagttttggctaatgaggctacaaagaggttcacttcaagcaattgggttctcatggaaatagcttgttctaggtcttcacatgaactacacctggtaaagcaagcttaccatgctaagttcaagaaatcccttgaagaggatgttgcatttcatacatccggagacttccgcaagcttttggtgcctcttgtgagtgctttccgatatgaaggagatgaagtgaacattacagtagcaaaaagagaggctaagatacttcatgagaaaatcaaggacaaacactacaatgatgaggagctcatcaggatcttcactaccaggagtaaggcacagctgaacgctactttcaatcagtacaacaatgagtttggaaatgccattacaaaggatttgaaggctgatgcagatgatgagttcctcaaattactgagagcaactgccaaactgttgaccttccctgagaaatactttgagaagcttctgcgtctgtgtatcaacaagctcgggactgacgaaggtgcgcttactagagttattaccacaagggctgaggttgacctccatcgcattaaagaagaataccagcgccggaacagtgttcctttggaccgtgcaattgagaaggacacttctggtgactatgagaaatttcttctggccctgcttggacatggagattgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006810 GO:0006950 GO:0006970 GO:0008150 GO:0008643 GO:0009266 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009579 GO:0009628 GO:0009651 GO:0010035 GO:0015774 GO:0016020 GO:0033036 GO:0033037 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0050896 GO:0051179 GO:0051234 GO:0071702 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Annexin

Protein Analysis

245

Amino Acids

28.33

Weight (kDa)

7.74

Isoelectric Point (pI)

34.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004650)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35720 AT5G65020 AT5G65020
fragaria_vesca	FvH4_1g20930 FvH4_1g20930 FvH4_1g20930 FvH4_1g20930 FvH4_1g20930 FvH4_1g20930 FvH4_1g20930
malus_domestica	MD01G1029100.v1.1 MD04G1000900.v1.1
prunus_persica	Prupe.6G186600_v2.0.a1
pyrus_communis	pycom01g05720
rosa_chinensis	RchiOBHm_Chr2g0114411 RchiOBHm_Chr2g0114431
rosa_laevigata	RLG00000018099 RLG00000018100
rosa_multiflora	Rmu_co8507663.1_g000001 Rmu_co8512843.1_g000002 Rmu_sc0000431.1_g000032
rosa_roxburghii	Rroxscaffold_2G00130130 Rroxscaffold_2G00130140
rosa_rugosa	Rorug02G0190300
rosa_samantha	Rh2AG247400 Rh2BG257200 Rh2BG257300 Rh2CG250900 Rh2DG255400
rosa_wichuraiana	Rw2G019220 Rw2G019230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	235
AccIII	TCCGGA	1 cut(s)	212
AciI	CCGC	1 cut(s)	223
AclWI	GGATC	1 cut(s)	368
AcsI	RAATTY	1 cut(s)	701
AfaI	GTAC	2 cut(s)	5, 410
AfiI	CCNNNNNNNGG	1 cut(s)	190
AgsI	TTSAA	5 cut(s)	90, 175, 188, 403, 448
AjnI	CCWGG	2 cut(s)	144, 371
AluBI	AGCT	8 cut(s)	14, 116, 158, 229, 352, 388, 532, 556
AluI	AGCT	8 cut(s)	14, 116, 158, 229, 352, 388, 532, 556
Alw21I	GWGCWC	1 cut(s)	354
Alw26I	GTCTC	1 cut(s)	210
AlwI	GGATC	1 cut(s)	368
Ama87I	CYCGRG	1 cut(s)	557
Aor13HI	TCCGGA	1 cut(s)	212
AoxI	GGCC	1 cut(s)	711
ApeKI	GCWGC	1 cut(s)	19
ApoI	RAATTY	1 cut(s)	701
AspLEI	GCGC	2 cut(s)	577, 642
AspS9I	GGNCC	2 cut(s)	661, 712
AsuHPI	GGTGA	1 cut(s)	701
AvaI	CYCGRG	1 cut(s)	557
AvaII	GGWCC	1 cut(s)	661
BanI	GGYRCC	1 cut(s)	235
BanII	GRGCYC	1 cut(s)	354
BbsI	GAAGAC	1 cut(s)	120
Bbv12I	GWGCWC	1 cut(s)	354
BbvCI	CCTCAGC	1 cut(s)	603
BbvI	GCAGC	1 cut(s)	6
BccI	CCATC	1 cut(s)	624
BciT130I	CCWGG	2 cut(s)	146, 373
BcoDI	GTCTC	1 cut(s)	210
BfaI	CTAG	2 cut(s)	123, 582
BfoI	RGCGCY	1 cut(s)	643
BisI	GCNGC	1 cut(s)	20
BlsI	GCNGC	1 cut(s)	21
Bme1390I	CCNGG	2 cut(s)	146, 373
Bme18I	GGWCC	1 cut(s)	661
BmeT110I	CYCGRG	1 cut(s)	557
BmgT120I	GGNCC	2 cut(s)	661, 712
BmiI	GGNNCC	1 cut(s)	237
BmrFI	CCNGG	2 cut(s)	146, 373
BmsI	GCATC	3 cut(s)	40, 43, 445
BpiI	GAAGAC	1 cut(s)	120
Bpu10I	CCTNAGC	1 cut(s)	603
BsaWI	WCCGGW	1 cut(s)	212
BsaXI	ACNNNNNCTCC	2 cut(s)	258, 288
Bsc4I	CCNNNNNNNGG	1 cut(s)	190
BseAI	TCCGGA	1 cut(s)	212
BseBI	CCWGG	2 cut(s)	146, 373
BseGI	GGATG	3 cut(s)	34, 199, 209
BseLI	CCNNNNNNNGG	1 cut(s)	190
BseMII	CTCAG	4 cut(s)	33, 473, 504, 594
BseRI	GAGGAG	1 cut(s)	362
BseXI	GCAGC	1 cut(s)	6
BshFI	GGCC	1 cut(s)	713
BshNI	GGYRCC	1 cut(s)	235
BsiHKAI	GWGCWC	1 cut(s)	354
BsiHKCI	CYCGRG	1 cut(s)	557
BsiSI	CCGG	2 cut(s)	213, 643
BslFI	GGGAC	1 cut(s)	574
BslI	CCNNNNNNNGG	1 cut(s)	190
BsmAI	GTCTC	1 cut(s)	210
BsmFI	GGGAC	1 cut(s)	574
BsnI	GGCC	1 cut(s)	713
BsoBI	CYCGRG	1 cut(s)	557
Bsp1286I	GDGCHC	1 cut(s)	354
Bsp13I	TCCGGA	1 cut(s)	212
Bsp143I	GATC	1 cut(s)	360
BspACI	CCGC	1 cut(s)	223
BspANI	GGCC	1 cut(s)	713
BspCNI	CTCAG	4 cut(s)	34, 474, 505, 595
BspEI	TCCGGA	1 cut(s)	212
BspHI	TCATGA	1 cut(s)	313
BspLI	GGNNCC	1 cut(s)	237
BspPI	GGATC	1 cut(s)	368
BspT107I	GGYRCC	1 cut(s)	235
BssMI	GATC	1 cut(s)	360
Bst2UI	CCWGG	2 cut(s)	146, 373
Bst4CI	ACNGT	4 cut(s)	286, 501, 650, 665
Bst6I	CTCTTC	1 cut(s)	183
BstC8I	GCNNGC	3 cut(s)	12, 156, 227
BstDEI	CTNAG	6 cut(s)	42, 168, 303, 482, 513, 603
BstENI	CCTNNNNNAGG	1 cut(s)	188
BstF5I	GGATG	3 cut(s)	34, 199, 209
BstH2I	RGCGCY	1 cut(s)	643
BstHHI	GCGC	2 cut(s)	577, 642
BstKTI	GATC	1 cut(s)	363
BstMAI	GTCTC	1 cut(s)	210
BstMBI	GATC	1 cut(s)	360
BstMWI	GCNNNNNNNGC	5 cut(s)	16, 59, 68, 164, 235
BstNI	CCWGG	2 cut(s)	146, 373
BstSCI	CCNGG	2 cut(s)	144, 371
BstV1I	GCAGC	1 cut(s)	6
BstV2I	GAAGAC	1 cut(s)	120
BstX2I	RGATCY	1 cut(s)	360
BstYI	RGATCY	1 cut(s)	360
BsuRI	GGCC	1 cut(s)	713
BtgZI	GCGATG	1 cut(s)	602
BtsCI	GGATG	3 cut(s)	34, 199, 209
BtsI	GCAGTG	1 cut(s)	29
BtsIMutI	CAGTG	2 cut(s)	29, 655
Cac8I	GCNNGC	3 cut(s)	12, 156, 227
CciI	TCATGA	1 cut(s)	313
CfoI	GCGC	2 cut(s)	577, 642
Cfr13I	GGNCC	2 cut(s)	661, 712
CseI	GACGC	1 cut(s)	527
CsiI	ACCWGGT	1 cut(s)	144
Csp6I	GTAC	2 cut(s)	4, 409
CviAII	CATG	5 cut(s)	106, 134, 164, 314, 725
CviQI	GTAC	2 cut(s)	4, 409
DdeI	CTNAG	6 cut(s)	42, 168, 303, 482, 513, 603
DpnI	GATC	1 cut(s)	362
DpnII	GATC	1 cut(s)	360
Eam1104I	CTCTTC	1 cut(s)	183
EarI	CTCTTC	1 cut(s)	183
Ecl136II	GAGCTC	1 cut(s)	352
Eco24I	GRGCYC	1 cut(s)	354
Eco47I	GGWCC	1 cut(s)	661
Eco53kI	GAGCTC	1 cut(s)	352
Eco88I	CYCGRG	1 cut(s)	557
EcoICRI	GAGCTC	1 cut(s)	352
EcoNI	CCTNNNNNAGG	1 cut(s)	188
EcoRII	CCWGG	2 cut(s)	144, 371
EcoT38I	GRGCYC	1 cut(s)	354
FaeI	CATG	5 cut(s)	109, 137, 167, 317, 728
FaiI	YATR	8 cut(s)	107, 135, 165, 207, 261, 315, 696, 726
FalI	AAGNNNNNCTT	2 cut(s)	561, 593
FaqI	GGGAC	1 cut(s)	574
FatI	CATG	5 cut(s)	105, 133, 163, 313, 724
Fnu4HI	GCNGC	1 cut(s)	20
FokI	GGATG	3 cut(s)	21, 196, 206
FriOI	GRGCYC	1 cut(s)	354
Fsp4HI	GCNGC	1 cut(s)	20
FspBI	CTAG	2 cut(s)	123, 582
GlaI	GCGC	2 cut(s)	576, 641
GluI	GCNGC	1 cut(s)	20
HaeII	RGCGCY	1 cut(s)	643
HaeIII	GGCC	1 cut(s)	713
HapII	CCGG	2 cut(s)	213, 643
HgaI	GACGC	1 cut(s)	527
HhaI	GCGC	2 cut(s)	577, 642
Hin1II	CATG	5 cut(s)	109, 137, 167, 317, 728
Hin6I	GCGC	2 cut(s)	575, 640
HinP1I	GCGC	2 cut(s)	575, 640
HincII	GTYRAC	2 cut(s)	504, 610
HindII	GTYRAC	2 cut(s)	504, 610
HindIII	AAGCTT	3 cut(s)	156, 227, 530
HpaII	CCGG	2 cut(s)	213, 643
HphI	GGTGA	1 cut(s)	701
Hpy166II	GTNNAC	5 cut(s)	27, 84, 277, 504, 610
Hpy188I	TCNGA	2 cut(s)	43, 257
Hpy188III	TCNNGA	5 cut(s)	175, 213, 314, 358, 559
Hpy8I	GTNNAC	5 cut(s)	27, 84, 277, 504, 610
HpyAV	CCTTC	6 cut(s)	48, 257, 442, 517, 563, 670
HpyCH4III	ACNGT	4 cut(s)	286, 501, 650, 665
HpyCH4V	TGCA	5 cut(s)	34, 53, 200, 458, 668
HpyF10VI	GCNNNNNNNGC	5 cut(s)	16, 59, 68, 164, 235
HpyF3I	CTNAG	6 cut(s)	42, 168, 303, 482, 513, 603
Hsp92II	CATG	5 cut(s)	109, 137, 167, 317, 728
HspAI	GCGC	2 cut(s)	575, 640
Kpn2I	TCCGGA	1 cut(s)	212
Kzo9I	GATC	1 cut(s)	360
LmnI	GCTCC	1 cut(s)	349
Lsp1109I	GCAGC	1 cut(s)	6
LweI	GCATC	3 cut(s)	40, 43, 445
MabI	ACCWGGT	1 cut(s)	144
MaeI	CTAG	2 cut(s)	123, 582
MaeIII	GTNAC	1 cut(s)	689
MalI	GATC	1 cut(s)	362
MboI	GATC	1 cut(s)	360
MboII	GAAGA	5 cut(s)	120, 200, 355, 641, 698
MfeI	CAATTG	2 cut(s)	94, 669
MflI	RGATCY	1 cut(s)	360
MhlI	GDGCHC	1 cut(s)	354
MluCI	AATT	4 cut(s)	94, 476, 669, 701
MnlI	CCTC	9 cut(s)	61, 72, 184, 249, 292, 340, 482, 598, 623
MroI	TCCGGA	1 cut(s)	212
MseI	TTAA	1 cut(s)	624
MslI	CAYNNNNRTG	1 cut(s)	339
MspA1I	CMGCKG	1 cut(s)	388
MspI	CCGG	2 cut(s)	213, 643
MspR9I	CCNGG	2 cut(s)	146, 373
MunI	CAATTG	2 cut(s)	94, 669
MvaI	CCWGG	2 cut(s)	146, 373
MwoI	GCNNNNNNNGC	5 cut(s)	16, 59, 68, 164, 235
NdeII	GATC	1 cut(s)	360
NlaIII	CATG	5 cut(s)	109, 137, 167, 317, 728
NlaIV	GGNNCC	1 cut(s)	237
NmuCI	GTSAC	1 cut(s)	689
PagI	TCATGA	1 cut(s)	313
PcsI	WCGNNNNNNNCGW	1 cut(s)	564
PkrI	GCNGC	1 cut(s)	21
Psp124BI	GAGCTC	1 cut(s)	354
Psp6I	CCWGG	2 cut(s)	144, 371
PspGI	CCWGG	2 cut(s)	144, 371
PspN4I	GGNNCC	1 cut(s)	237
PspPI	GGNCC	2 cut(s)	661, 712
PsuI	RGATCY	1 cut(s)	360
PvuII	CAGCTG	1 cut(s)	388
RsaI	GTAC	2 cut(s)	5, 410
RsaNI	GTAC	2 cut(s)	4, 409
RseI	CAYNNNNRTG	1 cut(s)	339
SacI	GAGCTC	1 cut(s)	354
SaqAI	TTAA	1 cut(s)	624
SatI	GCNGC	1 cut(s)	20
Sau3AI	GATC	1 cut(s)	360
Sau96I	GGNCC	2 cut(s)	661, 712
ScrFI	CCNGG	2 cut(s)	146, 373
SduI	GDGCHC	1 cut(s)	354
SexAI	ACCWGGT	1 cut(s)	144
SfaNI	GCATC	3 cut(s)	40, 43, 445
SinI	GGWCC	1 cut(s)	661
SmiMI	CAYNNNNRTG	1 cut(s)	339
Sse9I	AATT	4 cut(s)	94, 476, 669, 701
SsiI	CCGC	1 cut(s)	223
SspMI	CTAG	2 cut(s)	123, 582
SstI	GAGCTC	1 cut(s)	354
StyD4I	CCNGG	2 cut(s)	144, 371
TaaI	ACNGT	4 cut(s)	286, 501, 650, 665
TasI	AATT	4 cut(s)	94, 476, 669, 701
TatI	WGTACW	1 cut(s)	408
Tru1I	TTAA	1 cut(s)	624
Tru9I	TTAA	1 cut(s)	624
TscAI	CASTG	2 cut(s)	36, 655
TseFI	GTSAC	1 cut(s)	689
TseI	GCWGC	1 cut(s)	19
Tsp45I	GTSAC	1 cut(s)	689
TspDTI	ATGAA	5 cut(s)	150, 194, 276, 285, 302
TspRI	CASTG	2 cut(s)	36, 655
VpaK11BI	GGWCC	1 cut(s)	661
XagI	CCTNNNNNAGG	1 cut(s)	188
XapI	RAATTY	1 cut(s)	701
XspI	CTAG	2 cut(s)	123, 582

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.