Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0004650

Physical Location & Seq

Genomic Coordinates Reverse (-)

5576869 .. 5579816

Gene Structure 2948 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g05720.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGTATGTAATTACTAAATATACTAATGCAGCAGTCAAATTAGCAAGACTGTCACTAAGTCTATATAAAGGACCAAGCTCCGCACTCTCCGTATCATCACTCTTCTTCTTCTTACATACAAAAACAGACAGAGAGAGAATGGCGAGTTGCAGAGTGCCGGATGTGGTTCCTTCTCCAGTGGAAGACGCTGAGCAGCTCAGGAAAGCTTTTGCAGGATGGGGCACAAATGAGGGATTGATCATATCCATACTGACTCACAGGAATGCAGCTCAGAGAAAATTAATTCAGCAGGCATACGCCGAAACCTATGGGGAAGATCTTCTCAAGTCGTTTGACAAAGAACTCTCGAGTGATTTTGAGAGGGCTGTGGTGCTGTGGACTCTGGCTCCTGCTGAGAGAGATGCATTTTTGGCTAATGAATCTACGAAGTTGTTGACTAAAAACTATTGGATACTCTTGGAAATAGCTACAACTAGGTCTTCACATGACCTGTACCAGGTCAAGGTGGCGTATCATGCCCGTTACAAGAAATCCCTTGAAGAAGATGTTGCATATCACACATCTGGAGATGTCCGCAAGCTTTTGGTTCCCCTTTTGAGCACTTTCCGATACGAGGGAGATGAGATTAACGTGCCCTTGTCAAAGAAAGAAGCTAAGATACTTCATGAGAAAATCTCAGACAAAGCCTACAATGATGAGGAGCTCATCAGGATCCTCACTACCAGGAGCAAAGCACAGCTGAATGCAACCCTCAATCAGTACAACAACGAGTTTGGAAACGCCATTAACAAGGATTTGAAGGCTGACAAAGATGATGAGTTCCTCAAACTACTAAGACAAACAATCAAAAGCTTGACCTTCCCTGAGAAATACTTTGAGAAGGTTCTTCGACTGGCCATCAACAAGCTTGGGACAGACGAAGGGGCGCTTACTAGAGTTATTACCACCCGGGCAGAGGTTGACCTGCAGCGCATCAAAGAAGAATACTACCGGAGGAACAGCGTTCATTTGGACCACGCAATTGTCAAGGACACTTCCGGAGACTATGAGAAGTTTCTTGTGGAACTGGTTGGACATGCAGATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006810 GO:0006950 GO:0006970 GO:0008150 GO:0008643 GO:0009266 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009579 GO:0009628 GO:0009651 GO:0010035 GO:0015774 GO:0016020 GO:0033036 GO:0033037 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0050896 GO:0051179 GO:0051234 GO:0071702 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Annexin

Protein Analysis

363

Amino Acids

41.36

Weight (kDa)

7.75

Isoelectric Point (pI)

29.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004650)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35720 AT5G65020 AT5G65020
fragaria_vesca	FvH4_1g20930 FvH4_1g20930 FvH4_1g20930 FvH4_1g20930 FvH4_1g20930 FvH4_1g20930 FvH4_1g20930
malus_domestica	MD01G1029100.v1.1 MD04G1000900.v1.1
prunus_persica	Prupe.6G186600_v2.0.a1
pyrus_communis	pycom01g05720
rosa_chinensis	RchiOBHm_Chr2g0114411 RchiOBHm_Chr2g0114431
rosa_laevigata	RLG00000018099 RLG00000018100
rosa_multiflora	Rmu_co8507663.1_g000001 Rmu_co8512843.1_g000002 Rmu_sc0000431.1_g000032
rosa_roxburghii	Rroxscaffold_2G00130130 Rroxscaffold_2G00130140
rosa_rugosa	Rorug02G0190300
rosa_samantha	Rh2AG247400 Rh2BG257200 Rh2BG257300 Rh2CG250900 Rh2DG255400
rosa_wichuraiana	Rw2G019220 Rw2G019230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	972
AccIII	TCCGGA	1 cut(s)	1037
AciI	CCGC	2 cut(s)	81, 574
AclWI	GGATC	2 cut(s)	706, 719
AcoI	YGGCCR	1 cut(s)	894
AfaI	GTAC	2 cut(s)	494, 761
AfiI	CCNNNNNNNGG	4 cut(s)	496, 502, 613, 955
AgsI	TTSAA	2 cut(s)	539, 799
AjnI	CCWGG	2 cut(s)	495, 722
Alw21I	GWGCWC	2 cut(s)	602, 705
Alw26I	GTCTC	1 cut(s)	1035
AlwI	GGATC	2 cut(s)	706, 719
Ama87I	CYCGRG	2 cut(s)	346, 948
Aor13HI	TCCGGA	1 cut(s)	1037
AoxI	GGCC	1 cut(s)	894
ApeKI	GCWGC	4 cut(s)	29, 193, 266, 967
AseI	ATTAAT	1 cut(s)	281
Asp700I	GAANNNNTTC	1 cut(s)	318
AspLEI	GCGC	2 cut(s)	928, 972
AspS9I	GGNCC	2 cut(s)	71, 1012
AsuC2I	CCSGG	2 cut(s)	949, 950
AvaI	CYCGRG	2 cut(s)	346, 948
AvaII	GGWCC	2 cut(s)	71, 1012
BaeGI	GKGCMC	2 cut(s)	224, 636
BalI	TGGCCA	1 cut(s)	896
BamHI	GGATCC	1 cut(s)	711
BanII	GRGCYC	1 cut(s)	705
BarI	GAAGNNNNNNTAC	2 cut(s)	642, 674
BbsI	GAAGAC	2 cut(s)	189, 471
Bbv12I	GWGCWC	2 cut(s)	602, 705
BbvI	GCAGC	4 cut(s)	41, 205, 278, 979
BccI	CCATC	2 cut(s)	210, 905
BciT130I	CCWGG	2 cut(s)	497, 724
BciVI	GTATCC	1 cut(s)	444
BclI	TGATCA	1 cut(s)	237
BcnI	CCSGG	2 cut(s)	949, 950
BcoDI	GTCTC	1 cut(s)	1035
BfaI	CTAG	2 cut(s)	474, 933
BfmI	CTRYAG	1 cut(s)	965
BfoI	RGCGCY	1 cut(s)	929
BfuAI	ACCTGC	1 cut(s)	972
BfuI	GTATCC	1 cut(s)	444
BglII	AGATCT	1 cut(s)	316
BisI	GCNGC	4 cut(s)	30, 194, 267, 968
BlpI	GCTNAGC	1 cut(s)	189
BlsI	GCNGC	4 cut(s)	31, 195, 268, 969
Bme1390I	CCNGG	4 cut(s)	497, 724, 949, 950
Bme18I	GGWCC	2 cut(s)	71, 1012
BmeT110I	CYCGRG	2 cut(s)	346, 948
BmgT120I	GGNCC	2 cut(s)	71, 1012
BmiI	GGNNCC	4 cut(s)	168, 387, 588, 713
BmrFI	CCNGG	4 cut(s)	497, 724, 949, 950
BmsI	GCATC	3 cut(s)	391, 981, 1072
BpiI	GAAGAC	2 cut(s)	189, 471
BplI	GAGNNNNNCTC	2 cut(s)	659, 691
BpmI	CTGGAG	2 cut(s)	159, 585
Bpu10I	CCTNAGC	1 cut(s)	197
Bpu1102I	GCTNAGC	1 cut(s)	189
BpuEI	CTTGAG	1 cut(s)	308
BpuMI	CCSGG	2 cut(s)	949, 950
BsaJI	CCNNGG	1 cut(s)	948
BsaWI	WCCGGW	2 cut(s)	990, 1037
BsaXI	ACNNNNNCTCC	2 cut(s)	370, 400
Bsc4I	CCNNNNNNNGG	4 cut(s)	496, 502, 613, 955
Bse1I	ACTGG	3 cut(s)	176, 897, 1071
BseAI	TCCGGA	1 cut(s)	1037
BseBI	CCWGG	2 cut(s)	497, 724
BseDI	CCNNGG	1 cut(s)	948
BseGI	GGATG	2 cut(s)	166, 221
BseLI	CCNNNNNNNGG	4 cut(s)	496, 502, 613, 955
BseMII	CTCAG	6 cut(s)	180, 211, 284, 384, 690, 855
BseNI	ACTGG	3 cut(s)	176, 897, 1071
BseRI	GAGGAG	1 cut(s)	713
BseSI	GKGCMC	2 cut(s)	224, 636
BseXI	GCAGC	4 cut(s)	41, 205, 278, 979
BshFI	GGCC	1 cut(s)	896
BsiHKAI	GWGCWC	2 cut(s)	602, 705
BsiHKCI	CYCGRG	2 cut(s)	346, 948
BsiSI	CCGG	4 cut(s)	158, 949, 991, 1038
BslFI	GGGAC	1 cut(s)	925
BslI	CCNNNNNNNGG	4 cut(s)	496, 502, 613, 955
BsmAI	GTCTC	1 cut(s)	1035
BsmFI	GGGAC	1 cut(s)	925
BsmI	GAATGC	2 cut(s)	268, 748
BsnI	GGCC	1 cut(s)	896
BsoBI	CYCGRG	2 cut(s)	346, 948
Bsp1286I	GDGCHC	4 cut(s)	224, 602, 636, 705
Bsp13I	TCCGGA	1 cut(s)	1037
Bsp143I	GATC	3 cut(s)	237, 316, 711
Bsp1720I	GCTNAGC	1 cut(s)	189
BspACI	CCGC	2 cut(s)	81, 574
BspANI	GGCC	1 cut(s)	896
BspCNI	CTCAG	6 cut(s)	181, 210, 283, 385, 689, 856
BspEI	TCCGGA	1 cut(s)	1037
BspHI	TCATGA	1 cut(s)	664
BspLI	GGNNCC	4 cut(s)	168, 387, 588, 713
BspMAI	CTGCAG	1 cut(s)	969
BspMI	ACCTGC	1 cut(s)	972
BspPI	GGATC	2 cut(s)	706, 719
BsrI	ACTGG	3 cut(s)	176, 897, 1071
BssECI	CCNNGG	1 cut(s)	948
BssMI	GATC	3 cut(s)	237, 316, 711
Bst2UI	CCWGG	2 cut(s)	497, 724
Bst4CI	ACNGT	1 cut(s)	51
Bst6I	CTCTTC	1 cut(s)	107
BstC8I	GCNNGC	2 cut(s)	291, 578
BstDEI	CTNAG	9 cut(s)	56, 189, 197, 270, 393, 654, 676, 833, 864
BstENI	CCTNNNNNAGG	1 cut(s)	494
BstF5I	GGATG	2 cut(s)	166, 221
BstH2I	RGCGCY	1 cut(s)	929
BstHHI	GCGC	2 cut(s)	928, 972
BstKTI	GATC	3 cut(s)	240, 319, 714
BstMAI	GTCTC	1 cut(s)	1035
BstMBI	GATC	3 cut(s)	237, 316, 711
BstMWI	GCNNNNNNNGC	2 cut(s)	410, 515
BstNI	CCWGG	2 cut(s)	497, 724
BstNSI	RCATGY	1 cut(s)	1079
BstSCI	CCNGG	4 cut(s)	495, 722, 947, 948
BstSFI	CTRYAG	1 cut(s)	965
BstSLI	GKGCMC	2 cut(s)	224, 636
BstV1I	GCAGC	4 cut(s)	41, 205, 278, 979
BstV2I	GAAGAC	2 cut(s)	189, 471
BstX2I	RGATCY	2 cut(s)	316, 711
BstYI	RGATCY	2 cut(s)	316, 711
BsuI	GTATCC	1 cut(s)	444
BsuRI	GGCC	1 cut(s)	896
BtsCI	GGATG	2 cut(s)	166, 221
BtsIMutI	CAGTG	1 cut(s)	183
BveI	ACCTGC	1 cut(s)	972
Cac8I	GCNNGC	2 cut(s)	291, 578
CciI	TCATGA	1 cut(s)	664
CfoI	GCGC	2 cut(s)	928, 972
Cfr13I	GGNCC	2 cut(s)	71, 1012
Cfr9I	CCCGGG	1 cut(s)	948
CseI	GACGC	1 cut(s)	194
CsiI	ACCWGGT	1 cut(s)	495
Csp6I	GTAC	2 cut(s)	493, 760
CviAII	CATG	4 cut(s)	485, 515, 665, 1076
CviQI	GTAC	2 cut(s)	493, 760
DdeI	CTNAG	9 cut(s)	56, 189, 197, 270, 393, 654, 676, 833, 864
DpnI	GATC	3 cut(s)	239, 318, 713
DpnII	GATC	3 cut(s)	237, 316, 711
EaeI	YGGCCR	1 cut(s)	894
Eam1104I	CTCTTC	1 cut(s)	107
EarI	CTCTTC	1 cut(s)	107
Ecl136II	GAGCTC	1 cut(s)	703
Eco24I	GRGCYC	1 cut(s)	705
Eco47I	GGWCC	2 cut(s)	71, 1012
Eco53kI	GAGCTC	1 cut(s)	703
Eco88I	CYCGRG	2 cut(s)	346, 948
EcoICRI	GAGCTC	1 cut(s)	703
EcoNI	CCTNNNNNAGG	1 cut(s)	494
EcoRII	CCWGG	2 cut(s)	495, 722
EcoT22I	ATGCAT	1 cut(s)	406
EcoT38I	GRGCYC	1 cut(s)	705
FaeI	CATG	4 cut(s)	488, 518, 668, 1079
FalI	AAGNNNNNCTT	2 cut(s)	912, 944
FaqI	GGGAC	1 cut(s)	925
FatI	CATG	4 cut(s)	484, 514, 664, 1075
FbaI	TGATCA	1 cut(s)	237
Fnu4HI	GCNGC	4 cut(s)	30, 194, 267, 968
FokI	GGATG	2 cut(s)	173, 228
FriOI	GRGCYC	1 cut(s)	705
Fsp4HI	GCNGC	4 cut(s)	30, 194, 267, 968
FspBI	CTAG	2 cut(s)	474, 933
GlaI	GCGC	2 cut(s)	927, 971
GluI	GCNGC	4 cut(s)	30, 194, 267, 968
GsuI	CTGGAG	2 cut(s)	159, 585
HaeII	RGCGCY	1 cut(s)	929
HaeIII	GGCC	1 cut(s)	896
HapII	CCGG	4 cut(s)	158, 949, 991, 1038
HgaI	GACGC	1 cut(s)	194
HhaI	GCGC	2 cut(s)	928, 972
Hin1II	CATG	4 cut(s)	488, 518, 668, 1079
Hin6I	GCGC	2 cut(s)	926, 970
HinP1I	GCGC	2 cut(s)	926, 970
HincII	GTYRAC	2 cut(s)	435, 961
HindII	GTYRAC	2 cut(s)	435, 961
HindIII	AAGCTT	4 cut(s)	204, 578, 850, 905
HinfI	GANTC	3 cut(s)	253, 379, 419
HpaII	CCGG	4 cut(s)	158, 949, 991, 1038
Hpy166II	GTNNAC	3 cut(s)	378, 435, 961
Hpy188I	TCNGA	3 cut(s)	273, 608, 679
Hpy188III	TCNNGA	6 cut(s)	199, 346, 564, 665, 709, 1038
Hpy8I	GTNNAC	3 cut(s)	378, 435, 961
HpyAV	CCTTC	5 cut(s)	180, 793, 868, 874, 914
HpyCH4III	ACNGT	1 cut(s)	51
HpyCH4IV	ACGT	1 cut(s)	630
HpyCH4V	TGCA	9 cut(s)	29, 150, 212, 266, 404, 551, 746, 967, 1079
HpyF10VI	GCNNNNNNNGC	2 cut(s)	410, 515
HpyF3I	CTNAG	9 cut(s)	56, 189, 197, 270, 393, 654, 676, 833, 864
HpySE526I	ACGT	1 cut(s)	630
Hsp92II	CATG	4 cut(s)	488, 518, 668, 1079
HspAI	GCGC	2 cut(s)	926, 970
Kpn2I	TCCGGA	1 cut(s)	1037
Ksp22I	TGATCA	1 cut(s)	237
Kzo9I	GATC	3 cut(s)	237, 316, 711
LmnI	GCTCC	4 cut(s)	83, 391, 700, 726
Lsp1109I	GCAGC	4 cut(s)	41, 205, 278, 979
LweI	GCATC	3 cut(s)	391, 981, 1072
MabI	ACCWGGT	1 cut(s)	495
MaeI	CTAG	2 cut(s)	474, 933
MaeII	ACGT	1 cut(s)	630
MaeIII	GTNAC	2 cut(s)	51, 521
MalI	GATC	3 cut(s)	239, 318, 713
MboI	GATC	3 cut(s)	237, 316, 711
MfeI	CAATTG	1 cut(s)	1020
MflI	RGATCY	2 cut(s)	316, 711
MhlI	GDGCHC	4 cut(s)	224, 602, 636, 705
MlsI	TGGCCA	1 cut(s)	896
MluCI	AATT	5 cut(s)	9, 38, 278, 282, 1020
MluNI	TGGCCA	1 cut(s)	896
MlyI	GAGTC	2 cut(s)	247, 373
MmeI	TCCRAC	1 cut(s)	1051
MnlI	CCTC	9 cut(s)	223, 354, 607, 691, 725, 761, 833, 949, 987
Mox20I	TGGCCA	1 cut(s)	896
Mph1103I	ATGCAT	1 cut(s)	406
MroI	TCCGGA	1 cut(s)	1037
MroXI	GAANNNNTTC	1 cut(s)	318
MscI	TGGCCA	1 cut(s)	896
MseI	TTAA	3 cut(s)	281, 627, 786
MslI	CAYNNNNRTG	2 cut(s)	261, 1080
Msp20I	TGGCCA	1 cut(s)	896
MspA1I	CMGCKG	1 cut(s)	739
MspI	CCGG	4 cut(s)	158, 949, 991, 1038
MspR9I	CCNGG	4 cut(s)	497, 724, 949, 950
MunI	CAATTG	1 cut(s)	1020
Mva1269I	GAATGC	2 cut(s)	268, 748
MvaI	CCWGG	2 cut(s)	497, 724
MwoI	GCNNNNNNNGC	2 cut(s)	410, 515
NciI	CCSGG	2 cut(s)	949, 950
NdeII	GATC	3 cut(s)	237, 316, 711
NlaIII	CATG	4 cut(s)	488, 518, 668, 1079
NlaIV	GGNNCC	4 cut(s)	168, 387, 588, 713
NmuCI	GTSAC	1 cut(s)	51
NsiI	ATGCAT	1 cut(s)	406
NspI	RCATGY	1 cut(s)	1079
PaeR7I	CTCGAG	1 cut(s)	346
PagI	TCATGA	1 cut(s)	664
PctI	GAATGC	2 cut(s)	268, 748
PdmI	GAANNNNTTC	1 cut(s)	318
PfeI	GAWTC	1 cut(s)	419
PkrI	GCNGC	4 cut(s)	31, 195, 268, 969
PleI	GAGTC	2 cut(s)	247, 373
PpsI	GAGTC	2 cut(s)	247, 373
PshBI	ATTAAT	1 cut(s)	281
Psp124BI	GAGCTC	1 cut(s)	705
Psp6I	CCWGG	2 cut(s)	495, 722
PspGI	CCWGG	2 cut(s)	495, 722
PspN4I	GGNNCC	4 cut(s)	168, 387, 588, 713
PspPI	GGNCC	2 cut(s)	71, 1012
PstI	CTGCAG	1 cut(s)	969
PsuI	RGATCY	2 cut(s)	316, 711
PvuII	CAGCTG	1 cut(s)	739
RsaI	GTAC	2 cut(s)	494, 761
RsaNI	GTAC	2 cut(s)	493, 760
RseI	CAYNNNNRTG	2 cut(s)	261, 1080
SacI	GAGCTC	1 cut(s)	705
SaqAI	TTAA	3 cut(s)	281, 627, 786
SatI	GCNGC	4 cut(s)	30, 194, 267, 968
Sau3AI	GATC	3 cut(s)	237, 316, 711
Sau96I	GGNCC	2 cut(s)	71, 1012
SchI	GAGTC	2 cut(s)	247, 373
ScrFI	CCNGG	4 cut(s)	497, 724, 949, 950
SduI	GDGCHC	4 cut(s)	224, 602, 636, 705
SexAI	ACCWGGT	1 cut(s)	495
SfaNI	GCATC	3 cut(s)	391, 981, 1072
SfcI	CTRYAG	1 cut(s)	965
Sfr274I	CTCGAG	1 cut(s)	346
SinI	GGWCC	2 cut(s)	71, 1012
SlaI	CTCGAG	1 cut(s)	346
SmaI	CCCGGG	1 cut(s)	950
SmiMI	CAYNNNNRTG	2 cut(s)	261, 1080
SmlI	CTYRAG	2 cut(s)	323, 346
SmoI	CTYRAG	2 cut(s)	323, 346
Sse9I	AATT	5 cut(s)	9, 38, 278, 282, 1020
SsiI	CCGC	2 cut(s)	81, 574
SspMI	CTAG	2 cut(s)	474, 933
SstI	GAGCTC	1 cut(s)	705
StyD4I	CCNGG	4 cut(s)	495, 722, 947, 948
TaaI	ACNGT	1 cut(s)	51
TaiI	ACGT	1 cut(s)	633
TaqI	TCGA	2 cut(s)	347, 889
TasI	AATT	5 cut(s)	9, 38, 278, 282, 1020
TatI	WGTACW	1 cut(s)	759
TfiI	GAWTC	1 cut(s)	419
Tru1I	TTAA	3 cut(s)	281, 627, 786
Tru9I	TTAA	3 cut(s)	281, 627, 786
TscAI	CASTG	1 cut(s)	183
TseFI	GTSAC	1 cut(s)	51
TseI	GCWGC	4 cut(s)	29, 193, 266, 967
Tsp45I	GTSAC	1 cut(s)	51
TspDTI	ATGAA	3 cut(s)	432, 653, 995
TspGWI	ACGGA	1 cut(s)	79
TspMI	CCCGGG	1 cut(s)	948
TspRI	CASTG	1 cut(s)	183
VpaK11BI	GGWCC	2 cut(s)	71, 1012
VspI	ATTAAT	1 cut(s)	281
XagI	CCTNNNNNAGG	1 cut(s)	494
XceI	RCATGY	1 cut(s)	1079
XhoI	CTCGAG	1 cut(s)	346
XmaI	CCCGGG	1 cut(s)	948
XmnI	GAANNNNTTC	1 cut(s)	318
XspI	CTAG	2 cut(s)	474, 933
Zsp2I	ATGCAT	1 cut(s)	406

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.