Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0004650

Physical Location & Seq

Genomic Coordinates Forward (+)

25315873 .. 25318628

Gene Structure 2756 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018099

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGGCGACTGTTCAAGTACCAGCATGCGTTCCTTCTCCTGCTGAGGACTCTGAGCAGCTCAAGAAGGCTTTTGAAGCTAACCTTGGTAATTTGTACGCAGGATGGGGCACAAATGAGGGCTTGATCATTTCCATATTGGCTCATAGGAATGCTGATCAGAGAAGACTAATTCAGCAGTCTTATGCTGAAACTTATGGGGAGGATCTTCTCAAGGCACTGGACAAAGAACTCACAAGTGATTTTGAGCGCGCTTTGCTGCTATGGACGCTGCATCCTTCCGAGCGTGATGCAGTTTTGGCTAATGAGGCTACAAAGAGGTTCACTTCAAGCAATTGGGTTCTCATGGAAATAGCTTGTTCTAGATCTTCACATGAACTACACCTGGTAAAGCAGGCTTACCATGCCAAGTTCAAGAAATCCCTTGAAGAGGATGTTGCATTCCATACGTCTGGAGACTTCCGCAAGCTTTTGGTACCTCTTGTGAGTGCTTTCCGATATGAAGGAGATGAAGTGAACGTTACAGTGGCAAAAAGAGAGGCTAAGATACTTCATGAGAAAATTAAGAACAAACACTACAATGATGAGGAGCTCATCAGGATTATCACTACCAGAAGTAAGGCACAGCTGAACGCTACTTTCAATCAGTACAACAATGAGTTTGGAAATGCCATTACCAAGGATTTGAAGGCTGATAAGGATGATGAATTCCTCAAGTTACTGAGAGCAACCGCCAAACTCTTGACCTTCCCTGAGAAGTACTTTGAGAAGCTTCTGCGTCTGTGTATCAACAAGCTTGGGACAGATGAAGGTGCGCTTACTAGAGTTATTACCACCAGGGCAGAGGTTGACCTGCATCGCATTAAGGAAGAATACCAGCGCAGAAACAGTGTTACTCTGGGCCATGCAATTCAAAAAGACACTAGAGGAGACTATGAGAAGCTGCTTCTGGAACTTATTGGACATGCAGATGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006810 GO:0006950 GO:0006970 GO:0008150 GO:0008643 GO:0009266 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009579 GO:0009628 GO:0009651 GO:0010035 GO:0015774 GO:0016020 GO:0033036 GO:0033037 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0050896 GO:0051179 GO:0051234 GO:0071702 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Annexin

Protein Analysis

325

Amino Acids

36.97

Weight (kDa)

6.62

Isoelectric Point (pI)

36.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Annexin	PF00191	32 - 87	4.2e-17	Annexin
Annexin	PF00191	96 - 160	1.1e-16	Annexin
Annexin	PF00191	179 - 242	5.2e-13	Annexin
Annexin	PF00191	253 - 318	1.8e-17	Annexin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004650)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35720 AT5G65020 AT5G65020
fragaria_vesca	FvH4_1g20930 FvH4_1g20930 FvH4_1g20930 FvH4_1g20930 FvH4_1g20930 FvH4_1g20930 FvH4_1g20930
malus_domestica	MD01G1029100.v1.1 MD04G1000900.v1.1
prunus_persica	Prupe.6G186600_v2.0.a1
pyrus_communis	pycom01g05720
rosa_chinensis	RchiOBHm_Chr2g0114411 RchiOBHm_Chr2g0114431
rosa_laevigata	RLG00000018099 RLG00000018100
rosa_multiflora	Rmu_co8507663.1_g000001 Rmu_co8512843.1_g000002 Rmu_sc0000431.1_g000032
rosa_roxburghii	Rroxscaffold_2G00130130 Rroxscaffold_2G00130140
rosa_rugosa	Rorug02G0190300
rosa_samantha	Rh2AG247400 Rh2BG257200 Rh2BG257300 Rh2CG250900 Rh2DG255400
rosa_wichuraiana	Rw2G019220 Rw2G019230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	858
Acc65I	GGTACC	1 cut(s)	472
AccB1I	GGYRCC	1 cut(s)	472
AccII	CGCG	1 cut(s)	249
AciI	CCGC	2 cut(s)	460, 729
AclI	AACGTT	1 cut(s)	516
AclWI	GGATC	1 cut(s)	210
AcsI	RAATTY	1 cut(s)	704
AfaI	GTAC	5 cut(s)	18, 95, 474, 647, 758
AfiI	CCNNNNNNNGG	1 cut(s)	427
AgsI	TTSAA	8 cut(s)	14, 74, 327, 412, 425, 640, 685, 911
AjnI	CCWGG	2 cut(s)	381, 833
AjuI	GAANNNNNNNTTGG	2 cut(s)	66, 98
AluBI	AGCT	9 cut(s)	58, 77, 353, 466, 589, 625, 769, 793, 940
AluI	AGCT	9 cut(s)	58, 77, 353, 466, 589, 625, 769, 793, 940
Alw21I	GWGCWC	1 cut(s)	591
Alw26I	GTCTC	2 cut(s)	447, 921
AlwI	GGATC	1 cut(s)	210
AoxI	GGCC	1 cut(s)	898
ApeKI	GCWGC	4 cut(s)	55, 256, 268, 940
ApoI	RAATTY	1 cut(s)	704
Asp718I	GGTACC	1 cut(s)	472
AspLEI	GCGC	4 cut(s)	249, 251, 814, 879
AspS9I	GGNCC	1 cut(s)	898
BaeGI	GKGCMC	1 cut(s)	110
BanI	GGYRCC	1 cut(s)	472
BanII	GRGCYC	1 cut(s)	591
BbsI	GAAGAC	1 cut(s)	169
Bbv12I	GWGCWC	1 cut(s)	591
BbvCI	CCTCAGC	1 cut(s)	42
BbvI	GCAGC	4 cut(s)	67, 243, 255, 927
BccI	CCATC	1 cut(s)	96
BcgI	CGANNNNNNTGC	2 cut(s)	269, 303
BciT130I	CCWGG	2 cut(s)	383, 835
BclI	TGATCA	2 cut(s)	123, 154
BcoDI	GTCTC	2 cut(s)	447, 921
BfaI	CTAG	3 cut(s)	360, 819, 921
BfuAI	ACCTGC	1 cut(s)	858
BglII	AGATCT	1 cut(s)	362
BisI	GCNGC	4 cut(s)	56, 257, 269, 941
BlsI	GCNGC	4 cut(s)	57, 258, 270, 942
BmcAI	AGTACT	1 cut(s)	758
Bme1390I	CCNGG	2 cut(s)	383, 835
BmgT120I	GGNCC	1 cut(s)	898
BmiI	GGNNCC	1 cut(s)	474
BmrFI	CCNGG	2 cut(s)	383, 835
BmsI	GCATC	4 cut(s)	277, 280, 862, 958
BpiI	GAAGAC	1 cut(s)	169
BpmI	CTGGAG	1 cut(s)	471
Bpu10I	CCTNAGC	1 cut(s)	42
BpuEI	CTTGAG	3 cut(s)	44, 194, 695
BsaJI	CCNNGG	3 cut(s)	82, 675, 834
BsaXI	ACNNNNNCTCC	2 cut(s)	495, 525
Bsc4I	CCNNNNNNNGG	1 cut(s)	427
Bse1I	ACTGG	1 cut(s)	222
BseBI	CCWGG	2 cut(s)	383, 835
BseDI	CCNNGG	3 cut(s)	82, 675, 834
BseGI	GGATG	4 cut(s)	107, 271, 436, 703
BseLI	CCNNNNNNNGG	1 cut(s)	427
BseMII	CTCAG	4 cut(s)	33, 42, 710, 741
BseNI	ACTGG	1 cut(s)	222
BsePI	GCGCGC	1 cut(s)	247
BseRI	GAGGAG	2 cut(s)	599, 939
BseSI	GKGCMC	1 cut(s)	110
BseXI	GCAGC	4 cut(s)	67, 243, 255, 927
Bsh1236I	CGCG	1 cut(s)	249
BshFI	GGCC	1 cut(s)	900
BshNI	GGYRCC	1 cut(s)	472
BsiHKAI	GWGCWC	1 cut(s)	591
BslFI	GGGAC	1 cut(s)	811
BslI	CCNNNNNNNGG	1 cut(s)	427
BsmAI	GTCTC	2 cut(s)	447, 921
BsmFI	GGGAC	1 cut(s)	811
BsmI	GAATGC	2 cut(s)	154, 437
BsnI	GGCC	1 cut(s)	900
Bsp1286I	GDGCHC	2 cut(s)	110, 591
Bsp143I	GATC	4 cut(s)	123, 154, 202, 362
BspACI	CCGC	2 cut(s)	460, 729
BspANI	GGCC	1 cut(s)	900
BspCNI	CTCAG	4 cut(s)	34, 43, 711, 742
BspFNI	CGCG	1 cut(s)	249
BspHI	TCATGA	1 cut(s)	550
BspLI	GGNNCC	1 cut(s)	474
BspMI	ACCTGC	1 cut(s)	858
BspPI	GGATC	1 cut(s)	210
BspT107I	GGYRCC	1 cut(s)	472
BsrI	ACTGG	1 cut(s)	222
BssECI	CCNNGG	3 cut(s)	82, 675, 834
BssHII	GCGCGC	1 cut(s)	247
BssMI	GATC	4 cut(s)	123, 154, 202, 362
BssT1I	CCWWGG	2 cut(s)	82, 675
Bst2UI	CCWGG	2 cut(s)	383, 835
Bst4CI	ACNGT	3 cut(s)	10, 523, 887
Bst6I	CTCTTC	1 cut(s)	420
BstC8I	GCNNGC	4 cut(s)	25, 249, 393, 464
BstDEI	CTNAG	5 cut(s)	42, 51, 540, 719, 750
BstENI	CCTNNNNNAGG	1 cut(s)	425
BstF5I	GGATG	4 cut(s)	107, 271, 436, 703
BstFNI	CGCG	1 cut(s)	249
BstHHI	GCGC	4 cut(s)	249, 251, 814, 879
BstKTI	GATC	4 cut(s)	126, 157, 205, 365
BstMAI	GTCTC	2 cut(s)	447, 921
BstMBI	GATC	4 cut(s)	123, 154, 202, 362
BstMWI	GCNNNNNNNGC	6 cut(s)	74, 253, 265, 296, 305, 401
BstNI	CCWGG	2 cut(s)	383, 835
BstNSI	RCATGY	2 cut(s)	27, 965
BstSCI	CCNGG	2 cut(s)	381, 833
BstSLI	GKGCMC	1 cut(s)	110
BstUI	CGCG	1 cut(s)	249
BstV1I	GCAGC	4 cut(s)	67, 243, 255, 927
BstV2I	GAAGAC	1 cut(s)	169
BstX2I	RGATCY	2 cut(s)	202, 362
BstXI	CCANNNNNNTGG	1 cut(s)	449
BstYI	RGATCY	2 cut(s)	202, 362
BsuRI	GGCC	1 cut(s)	900
BtgZI	GCGATG	1 cut(s)	839
BtsCI	GGATG	4 cut(s)	107, 271, 436, 703
BtsIMutI	CAGTG	3 cut(s)	215, 528, 892
BveI	ACCTGC	1 cut(s)	858
Cac8I	GCNNGC	4 cut(s)	25, 249, 393, 464
CciI	TCATGA	1 cut(s)	550
CfoI	GCGC	4 cut(s)	249, 251, 814, 879
Cfr13I	GGNCC	1 cut(s)	898
CseI	GACGC	2 cut(s)	274, 764
CsiI	ACCWGGT	1 cut(s)	381
Csp6I	GTAC	5 cut(s)	17, 94, 473, 646, 757
CviAII	CATG	7 cut(s)	24, 343, 371, 401, 551, 902, 962
CviQI	GTAC	5 cut(s)	17, 94, 473, 646, 757
DdeI	CTNAG	5 cut(s)	42, 51, 540, 719, 750
DpnI	GATC	4 cut(s)	125, 156, 204, 364
DpnII	GATC	4 cut(s)	123, 154, 202, 362
Eam1104I	CTCTTC	1 cut(s)	420
EarI	CTCTTC	1 cut(s)	420
Ecl136II	GAGCTC	1 cut(s)	589
Eco130I	CCWWGG	2 cut(s)	82, 675
Eco24I	GRGCYC	1 cut(s)	591
Eco53kI	GAGCTC	1 cut(s)	589
EcoICRI	GAGCTC	1 cut(s)	589
EcoNI	CCTNNNNNAGG	1 cut(s)	425
EcoRI	GAATTC	1 cut(s)	704
EcoRII	CCWGG	2 cut(s)	381, 833
EcoT14I	CCWWGG	2 cut(s)	82, 675
EcoT38I	GRGCYC	1 cut(s)	591
ErhI	CCWWGG	2 cut(s)	82, 675
FaeI	CATG	7 cut(s)	27, 346, 374, 404, 554, 905, 965
FalI	AAGNNNNNCTT	4 cut(s)	66, 98, 798, 830
FaqI	GGGAC	1 cut(s)	811
FatI	CATG	7 cut(s)	23, 342, 370, 400, 550, 901, 961
FbaI	TGATCA	2 cut(s)	123, 154
Fnu4HI	GCNGC	4 cut(s)	56, 257, 269, 941
FokI	GGATG	4 cut(s)	114, 258, 443, 710
FriOI	GRGCYC	1 cut(s)	591
Fsp4HI	GCNGC	4 cut(s)	56, 257, 269, 941
FspBI	CTAG	3 cut(s)	360, 819, 921
GlaI	GCGC	4 cut(s)	248, 250, 813, 878
GluI	GCNGC	4 cut(s)	56, 257, 269, 941
GsuI	CTGGAG	1 cut(s)	471
HaeIII	GGCC	1 cut(s)	900
HgaI	GACGC	2 cut(s)	274, 764
HhaI	GCGC	4 cut(s)	249, 251, 814, 879
Hin1II	CATG	7 cut(s)	27, 346, 374, 404, 554, 905, 965
Hin6I	GCGC	4 cut(s)	247, 249, 812, 877
HinP1I	GCGC	4 cut(s)	247, 249, 812, 877
HincII	GTYRAC	1 cut(s)	847
HindII	GTYRAC	1 cut(s)	847
HindIII	AAGCTT	3 cut(s)	464, 767, 791
HinfI	GANTC	1 cut(s)	47
Hpy166II	GTNNAC	3 cut(s)	321, 514, 847
Hpy188I	TCNGA	4 cut(s)	52, 159, 280, 494
Hpy188III	TCNNGA	8 cut(s)	61, 360, 412, 450, 551, 595, 739, 947
Hpy8I	GTNNAC	3 cut(s)	321, 514, 847
HpyAV	CCTTC	7 cut(s)	42, 58, 285, 494, 679, 754, 800
HpyCH4III	ACNGT	3 cut(s)	10, 523, 887
HpyCH4IV	ACGT	2 cut(s)	446, 516
HpyCH4V	TGCA	6 cut(s)	271, 290, 437, 853, 905, 965
HpyF10VI	GCNNNNNNNGC	6 cut(s)	74, 253, 265, 296, 305, 401
HpyF3I	CTNAG	5 cut(s)	42, 51, 540, 719, 750
HpySE526I	ACGT	2 cut(s)	446, 516
Hsp92II	CATG	7 cut(s)	27, 346, 374, 404, 554, 905, 965
HspAI	GCGC	4 cut(s)	247, 249, 812, 877
KpnI	GGTACC	1 cut(s)	476
Ksp22I	TGATCA	2 cut(s)	123, 154
Kzo9I	GATC	4 cut(s)	123, 154, 202, 362
LmnI	GCTCC	1 cut(s)	586
Lsp1109I	GCAGC	4 cut(s)	67, 243, 255, 927
LweI	GCATC	4 cut(s)	277, 280, 862, 958
MabI	ACCWGGT	1 cut(s)	381
MaeI	CTAG	3 cut(s)	360, 819, 921
MaeII	ACGT	2 cut(s)	446, 516
MaeIII	GTNAC	3 cut(s)	517, 714, 889
MalI	GATC	4 cut(s)	125, 156, 204, 364
MboI	GATC	4 cut(s)	123, 154, 202, 362
MboII	GAAGA	5 cut(s)	174, 197, 357, 437, 878
MfeI	CAATTG	1 cut(s)	331
MflI	RGATCY	2 cut(s)	202, 362
MhlI	GDGCHC	2 cut(s)	110, 591
MluCI	AATT	6 cut(s)	88, 168, 331, 558, 704, 906
MlyI	GAGTC	1 cut(s)	41
MseI	TTAA	2 cut(s)	561, 861
MslI	CAYNNNNRTG	3 cut(s)	147, 576, 966
MspA1I	CMGCKG	1 cut(s)	625
MspR9I	CCNGG	2 cut(s)	383, 835
MunI	CAATTG	1 cut(s)	331
Mva1269I	GAATGC	2 cut(s)	154, 437
MvaI	CCWGG	2 cut(s)	383, 835
MvnI	CGCG	1 cut(s)	249
MwoI	GCNNNNNNNGC	6 cut(s)	74, 253, 265, 296, 305, 401
NdeII	GATC	4 cut(s)	123, 154, 202, 362
NlaIII	CATG	7 cut(s)	27, 346, 374, 404, 554, 905, 965
NlaIV	GGNNCC	1 cut(s)	474
NspI	RCATGY	2 cut(s)	27, 965
PaeI	GCATGC	1 cut(s)	27
PagI	TCATGA	1 cut(s)	550
PauI	GCGCGC	1 cut(s)	247
PctI	GAATGC	2 cut(s)	154, 437
PkrI	GCNGC	4 cut(s)	57, 258, 270, 942
PleI	GAGTC	1 cut(s)	41
PpsI	GAGTC	1 cut(s)	41
Psp124BI	GAGCTC	1 cut(s)	591
Psp1406I	AACGTT	1 cut(s)	516
Psp6I	CCWGG	2 cut(s)	381, 833
PspGI	CCWGG	2 cut(s)	381, 833
PspN4I	GGNNCC	1 cut(s)	474
PspPI	GGNCC	1 cut(s)	898
PsrI	GAACNNNNNNTAC	2 cut(s)	557, 589
PsuI	RGATCY	2 cut(s)	202, 362
PteI	GCGCGC	1 cut(s)	247
PvuII	CAGCTG	1 cut(s)	625
RsaI	GTAC	5 cut(s)	18, 95, 474, 647, 758
RsaNI	GTAC	5 cut(s)	17, 94, 473, 646, 757
RseI	CAYNNNNRTG	3 cut(s)	147, 576, 966
SacI	GAGCTC	1 cut(s)	591
SaqAI	TTAA	2 cut(s)	561, 861
SatI	GCNGC	4 cut(s)	56, 257, 269, 941
Sau3AI	GATC	4 cut(s)	123, 154, 202, 362
Sau96I	GGNCC	1 cut(s)	898
ScaI	AGTACT	1 cut(s)	758
SchI	GAGTC	1 cut(s)	41
ScrFI	CCNGG	2 cut(s)	383, 835
SduI	GDGCHC	2 cut(s)	110, 591
SexAI	ACCWGGT	1 cut(s)	381
SfaNI	GCATC	4 cut(s)	277, 280, 862, 958
SmiMI	CAYNNNNRTG	3 cut(s)	147, 576, 966
SmlI	CTYRAG	3 cut(s)	59, 209, 710
SmoI	CTYRAG	3 cut(s)	59, 209, 710
SphI	GCATGC	1 cut(s)	27
Sse9I	AATT	6 cut(s)	88, 168, 331, 558, 704, 906
SsiI	CCGC	2 cut(s)	460, 729
SspMI	CTAG	3 cut(s)	360, 819, 921
SstI	GAGCTC	1 cut(s)	591
StyD4I	CCNGG	2 cut(s)	381, 833
StyI	CCWWGG	2 cut(s)	82, 675
TaaI	ACNGT	3 cut(s)	10, 523, 887
TaiI	ACGT	2 cut(s)	449, 519
TasI	AATT	6 cut(s)	88, 168, 331, 558, 704, 906
TatI	WGTACW	2 cut(s)	645, 756
Tru1I	TTAA	2 cut(s)	561, 861
Tru9I	TTAA	2 cut(s)	561, 861
TscAI	CASTG	3 cut(s)	222, 528, 892
TseI	GCWGC	4 cut(s)	55, 256, 268, 940
TspDTI	ATGAA	6 cut(s)	387, 513, 522, 539, 717, 819
TspRI	CASTG	3 cut(s)	222, 528, 892
XagI	CCTNNNNNAGG	1 cut(s)	425
XapI	RAATTY	1 cut(s)	704
XbaI	TCTAGA	1 cut(s)	359
XceI	RCATGY	2 cut(s)	27, 965
XspI	CTAG	3 cut(s)	360, 819, 921
ZrmI	AGTACT	1 cut(s)	758

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.