Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0004650

Physical Location & Seq

Genomic Coordinates Forward (+)

25321921 .. 25324610

Gene Structure 2690 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018100

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGGCGACTCTTAAAGTACCGGCATGCGTTCCTTCTCCGGCTGAGGACTCTGAGCAGCTCAGGAAGGCTTTTGAAGCTAACTTTGGTAATTTGCACGCAGGATGGGGCACAAATGAGGCATTGATCATTTCCATATTGGCTCACAGGAATGCCGATCAGAGAAGACTAATTCAGCAGACTTATGCTGAAACCTATGGGGAGGATCTTCTCAAGTCACTGGACAAAGAACTCTCAAGTGATTTTGAGCGAGCTGTGCTGCTGTGGACACTGCATCCTTCTGAGCGTGATGCAGTTTTGGCTAATGAGGCTACAAAGAAGTTCACTTCAAGCAATTGGGTTCTCATGGAAATAGCTTGCTCTAGGTCTTCACATGAACTACACCTGGTAAAGCAGGCTTACCATGCTAAGTTCAAGAAATCCCTTGAAGAGGATGTTGCATTTCATACATCTGGAGACTTCCGCAAGCTTTTGGTGCCTCTTGTGAGTGCTTTCCGATATGAAGGAGATGAAGTGAACGTTACAGTAGCAAAAAGAGAGGCTAAGATACTTCATGAGAAAATCAAGGACAAACACTACAATGATGAGGAGCTCATCAGGATCTTCACTACCAGGAGTAAGGCACAGCTGAACGCTACTTTCAATCAGTACAACAATGAGTTTGGAAATGCTATTACAAAGGATTTGAAGGCTGATGCAGATGATGAGTTCCTCAAATTACTGAGAGCAACTGCCAAACTCTTGACCTACCCTGAGAAATACTTTGAGAAGCTTCTGCGTCTGTCTATCAACAAGCTCGGAACAGACGAAGGTGCGCTCACTAGAGTTGTTACCACCAGGGCAGAAGTTGACCTGCATCGAATTAAAGAAGAATACCAGCGCCGAAACAGTGTTCCTTTGGACCGCGCAATTGAGAAGGACACTTCTGGTGACTATGAGAAGTTTCTTCTGGCACTGCTTGGACATGGAGATTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006810 GO:0006950 GO:0006970 GO:0008150 GO:0008643 GO:0009266 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009579 GO:0009628 GO:0009651 GO:0010035 GO:0015774 GO:0016020 GO:0033036 GO:0033037 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0050896 GO:0051179 GO:0051234 GO:0071702 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Annexin

Protein Analysis

325

Amino Acids

36.97

Weight (kDa)

6.29

Isoelectric Point (pI)

34.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Annexin	PF00191	33 - 87	1.5e-17	Annexin
Annexin	PF00191	96 - 160	9.3e-17	Annexin
Annexin	PF00191	179 - 242	1.2e-13	Annexin
Annexin	PF00191	253 - 318	1.1e-18	Annexin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004650)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35720 AT5G65020 AT5G65020
fragaria_vesca	FvH4_1g20930 FvH4_1g20930 FvH4_1g20930 FvH4_1g20930 FvH4_1g20930 FvH4_1g20930 FvH4_1g20930
malus_domestica	MD01G1029100.v1.1 MD04G1000900.v1.1
prunus_persica	Prupe.6G186600_v2.0.a1
pyrus_communis	pycom01g05720
rosa_chinensis	RchiOBHm_Chr2g0114411 RchiOBHm_Chr2g0114431
rosa_laevigata	RLG00000018099 RLG00000018100
rosa_multiflora	Rmu_co8507663.1_g000001 Rmu_co8512843.1_g000002 Rmu_sc0000431.1_g000032
rosa_roxburghii	Rroxscaffold_2G00130130 Rroxscaffold_2G00130140
rosa_rugosa	Rorug02G0190300
rosa_samantha	Rh2AG247400 Rh2BG257200 Rh2BG257300 Rh2CG250900 Rh2DG255400
rosa_wichuraiana	Rw2G019220 Rw2G019230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	858
AccB1I	GGYRCC	1 cut(s)	472
AccII	CGCG	1 cut(s)	903
AciI	CCGC	2 cut(s)	460, 901
AclI	AACGTT	1 cut(s)	516
AclWI	GGATC	2 cut(s)	210, 605
AfaI	GTAC	2 cut(s)	18, 647
AfiI	CCNNNNNNNGG	1 cut(s)	427
AgsI	TTSAA	6 cut(s)	74, 327, 412, 425, 640, 685
AjnI	CCWGG	3 cut(s)	381, 608, 833
AjuI	GAANNNNNNNTTGG	2 cut(s)	66, 98
AluBI	AGCT	9 cut(s)	58, 77, 251, 353, 466, 589, 625, 769, 793
AluI	AGCT	9 cut(s)	58, 77, 251, 353, 466, 589, 625, 769, 793
Alw21I	GWGCWC	1 cut(s)	591
Alw26I	GTCTC	1 cut(s)	447
AlwI	GGATC	2 cut(s)	210, 605
ApeKI	GCWGC	2 cut(s)	55, 256
AspLEI	GCGC	3 cut(s)	814, 879, 905
AspS9I	GGNCC	1 cut(s)	898
AsuHPI	GGTGA	1 cut(s)	938
AvaII	GGWCC	1 cut(s)	898
BaeGI	GKGCMC	1 cut(s)	110
BanI	GGYRCC	1 cut(s)	472
BanII	GRGCYC	1 cut(s)	591
BbsI	GAAGAC	2 cut(s)	169, 357
Bbv12I	GWGCWC	1 cut(s)	591
BbvCI	CCTCAGC	1 cut(s)	42
BbvI	GCAGC	2 cut(s)	67, 243
BccI	CCATC	1 cut(s)	96
BciT130I	CCWGG	3 cut(s)	383, 610, 835
BclI	TGATCA	1 cut(s)	123
BcoDI	GTCTC	1 cut(s)	447
BfaI	CTAG	2 cut(s)	360, 819
BfoI	RGCGCY	1 cut(s)	880
BfuAI	ACCTGC	1 cut(s)	858
BisI	GCNGC	2 cut(s)	56, 257
BlsI	GCNGC	2 cut(s)	57, 258
Bme1390I	CCNGG	3 cut(s)	383, 610, 835
Bme18I	GGWCC	1 cut(s)	898
BmgT120I	GGNCC	1 cut(s)	898
BmiI	GGNNCC	1 cut(s)	474
BmrFI	CCNGG	3 cut(s)	383, 610, 835
BmsI	GCATC	4 cut(s)	277, 280, 682, 862
BpiI	GAAGAC	2 cut(s)	169, 357
BpmI	CTGGAG	1 cut(s)	471
Bpu10I	CCTNAGC	2 cut(s)	42, 59
BpuEI	CTTGAG	2 cut(s)	194, 217
BsaJI	CCNNGG	1 cut(s)	834
BsaXI	ACNNNNNCTCC	2 cut(s)	495, 525
Bsc4I	CCNNNNNNNGG	1 cut(s)	427
Bse118I	RCCGGY	1 cut(s)	19
Bse1I	ACTGG	1 cut(s)	222
BseBI	CCWGG	3 cut(s)	383, 610, 835
BseDI	CCNNGG	1 cut(s)	834
BseGI	GGATG	3 cut(s)	107, 271, 436
BseLI	CCNNNNNNNGG	1 cut(s)	427
BseMII	CTCAG	6 cut(s)	33, 42, 73, 270, 710, 741
BseNI	ACTGG	1 cut(s)	222
BseRI	GAGGAG	1 cut(s)	599
BseSI	GKGCMC	1 cut(s)	110
BseXI	GCAGC	2 cut(s)	67, 243
Bsh1236I	CGCG	1 cut(s)	903
BshNI	GGYRCC	1 cut(s)	472
BsiHKAI	GWGCWC	1 cut(s)	591
BsiSI	CCGG	2 cut(s)	20, 38
BslI	CCNNNNNNNGG	1 cut(s)	427
BsmAI	GTCTC	1 cut(s)	447
BsmI	GAATGC	1 cut(s)	154
Bsp1286I	GDGCHC	2 cut(s)	110, 591
Bsp143I	GATC	4 cut(s)	123, 154, 202, 597
BspACI	CCGC	2 cut(s)	460, 901
BspCNI	CTCAG	6 cut(s)	34, 43, 72, 271, 711, 742
BspFNI	CGCG	1 cut(s)	903
BspHI	TCATGA	1 cut(s)	550
BspLI	GGNNCC	1 cut(s)	474
BspMI	ACCTGC	1 cut(s)	858
BspPI	GGATC	2 cut(s)	210, 605
BspT107I	GGYRCC	1 cut(s)	472
BsrFI	RCCGGY	1 cut(s)	19
BsrI	ACTGG	1 cut(s)	222
BssAI	RCCGGY	1 cut(s)	19
BssECI	CCNNGG	1 cut(s)	834
BssMI	GATC	4 cut(s)	123, 154, 202, 597
Bst2UI	CCWGG	3 cut(s)	383, 610, 835
Bst4CI	ACNGT	2 cut(s)	523, 887
Bst6I	CTCTTC	1 cut(s)	420
BstC8I	GCNNGC	6 cut(s)	25, 96, 249, 355, 393, 464
BstDEI	CTNAG	8 cut(s)	42, 51, 59, 279, 405, 540, 719, 750
BstENI	CCTNNNNNAGG	1 cut(s)	425
BstF5I	GGATG	3 cut(s)	107, 271, 436
BstFNI	CGCG	1 cut(s)	903
BstH2I	RGCGCY	1 cut(s)	880
BstHHI	GCGC	3 cut(s)	814, 879, 905
BstKTI	GATC	4 cut(s)	126, 157, 205, 600
BstMAI	GTCTC	1 cut(s)	447
BstMBI	GATC	4 cut(s)	123, 154, 202, 597
BstMWI	GCNNNNNNNGC	6 cut(s)	74, 253, 296, 305, 401, 472
BstNI	CCWGG	3 cut(s)	383, 610, 835
BstNSI	RCATGY	1 cut(s)	27
BstSCI	CCNGG	3 cut(s)	381, 608, 833
BstSLI	GKGCMC	1 cut(s)	110
BstUI	CGCG	1 cut(s)	903
BstV1I	GCAGC	2 cut(s)	67, 243
BstV2I	GAAGAC	2 cut(s)	169, 357
BstX2I	RGATCY	2 cut(s)	202, 597
BstYI	RGATCY	2 cut(s)	202, 597
BtsCI	GGATG	3 cut(s)	107, 271, 436
BtsI	GCAGTG	2 cut(s)	266, 950
BtsIMutI	CAGTG	4 cut(s)	215, 266, 892, 950
BveI	ACCTGC	1 cut(s)	858
Cac8I	GCNNGC	6 cut(s)	25, 96, 249, 355, 393, 464
CciI	TCATGA	1 cut(s)	550
CfoI	GCGC	3 cut(s)	814, 879, 905
Cfr10I	RCCGGY	1 cut(s)	19
Cfr13I	GGNCC	1 cut(s)	898
CseI	GACGC	1 cut(s)	764
CsiI	ACCWGGT	1 cut(s)	381
Csp6I	GTAC	2 cut(s)	17, 646
CviAII	CATG	6 cut(s)	24, 343, 371, 401, 551, 962
CviQI	GTAC	2 cut(s)	17, 646
DdeI	CTNAG	8 cut(s)	42, 51, 59, 279, 405, 540, 719, 750
DpnI	GATC	4 cut(s)	125, 156, 204, 599
DpnII	GATC	4 cut(s)	123, 154, 202, 597
Eam1104I	CTCTTC	1 cut(s)	420
EarI	CTCTTC	1 cut(s)	420
Ecl136II	GAGCTC	1 cut(s)	589
Eco24I	GRGCYC	1 cut(s)	591
Eco47I	GGWCC	1 cut(s)	898
Eco53kI	GAGCTC	1 cut(s)	589
EcoICRI	GAGCTC	1 cut(s)	589
EcoNI	CCTNNNNNAGG	1 cut(s)	425
EcoRII	CCWGG	3 cut(s)	381, 608, 833
EcoT38I	GRGCYC	1 cut(s)	591
FaeI	CATG	6 cut(s)	27, 346, 374, 404, 554, 965
FatI	CATG	6 cut(s)	23, 342, 370, 400, 550, 961
FbaI	TGATCA	1 cut(s)	123
Fnu4HI	GCNGC	2 cut(s)	56, 257
FokI	GGATG	3 cut(s)	114, 258, 443
FriOI	GRGCYC	1 cut(s)	591
Fsp4HI	GCNGC	2 cut(s)	56, 257
FspBI	CTAG	2 cut(s)	360, 819
GlaI	GCGC	3 cut(s)	813, 878, 904
GluI	GCNGC	2 cut(s)	56, 257
GsuI	CTGGAG	1 cut(s)	471
HaeII	RGCGCY	1 cut(s)	880
HapII	CCGG	2 cut(s)	20, 38
HgaI	GACGC	1 cut(s)	764
HhaI	GCGC	3 cut(s)	814, 879, 905
Hin1II	CATG	6 cut(s)	27, 346, 374, 404, 554, 965
Hin6I	GCGC	3 cut(s)	812, 877, 903
HinP1I	GCGC	3 cut(s)	812, 877, 903
HincII	GTYRAC	1 cut(s)	847
HindII	GTYRAC	1 cut(s)	847
HindIII	AAGCTT	2 cut(s)	464, 767
HinfI	GANTC	2 cut(s)	7, 47
HpaII	CCGG	2 cut(s)	20, 38
HphI	GGTGA	1 cut(s)	938
Hpy166II	GTNNAC	4 cut(s)	264, 321, 514, 847
Hpy188I	TCNGA	5 cut(s)	52, 159, 280, 494, 797
Hpy188III	TCNNGA	6 cut(s)	61, 412, 450, 551, 595, 739
Hpy8I	GTNNAC	4 cut(s)	264, 321, 514, 847
HpyAV	CCTTC	7 cut(s)	42, 58, 285, 494, 679, 800, 907
HpyCH4III	ACNGT	2 cut(s)	523, 887
HpyCH4IV	ACGT	1 cut(s)	516
HpyCH4V	TGCA	6 cut(s)	94, 271, 290, 437, 695, 853
HpyF10VI	GCNNNNNNNGC	6 cut(s)	74, 253, 296, 305, 401, 472
HpyF3I	CTNAG	8 cut(s)	42, 51, 59, 279, 405, 540, 719, 750
HpySE526I	ACGT	1 cut(s)	516
Hsp92II	CATG	6 cut(s)	27, 346, 374, 404, 554, 965
HspAI	GCGC	3 cut(s)	812, 877, 903
Ksp22I	TGATCA	1 cut(s)	123
Kzo9I	GATC	4 cut(s)	123, 154, 202, 597
LmnI	GCTCC	1 cut(s)	586
Lsp1109I	GCAGC	2 cut(s)	67, 243
LweI	GCATC	4 cut(s)	277, 280, 682, 862
MabI	ACCWGGT	1 cut(s)	381
MaeI	CTAG	2 cut(s)	360, 819
MaeII	ACGT	1 cut(s)	516
MaeIII	GTNAC	4 cut(s)	213, 517, 826, 926
MalI	GATC	4 cut(s)	125, 156, 204, 599
MboI	GATC	4 cut(s)	123, 154, 202, 597
MboII	GAAGA	7 cut(s)	174, 197, 357, 437, 592, 878, 935
MfeI	CAATTG	2 cut(s)	331, 906
MflI	RGATCY	2 cut(s)	202, 597
MhlI	GDGCHC	2 cut(s)	110, 591
MluCI	AATT	6 cut(s)	88, 168, 331, 713, 858, 906
MlyI	GAGTC	1 cut(s)	41
MnlI	CCTC	9 cut(s)	37, 109, 193, 298, 421, 486, 529, 577, 719
MseI	TTAA	2 cut(s)	12, 861
MslI	CAYNNNNRTG	2 cut(s)	147, 576
MspA1I	CMGCKG	1 cut(s)	625
MspI	CCGG	2 cut(s)	20, 38
MspR9I	CCNGG	3 cut(s)	383, 610, 835
MunI	CAATTG	2 cut(s)	331, 906
Mva1269I	GAATGC	1 cut(s)	154
MvaI	CCWGG	3 cut(s)	383, 610, 835
MvnI	CGCG	1 cut(s)	903
MwoI	GCNNNNNNNGC	6 cut(s)	74, 253, 296, 305, 401, 472
NdeII	GATC	4 cut(s)	123, 154, 202, 597
NlaIII	CATG	6 cut(s)	27, 346, 374, 404, 554, 965
NlaIV	GGNNCC	1 cut(s)	474
NmuCI	GTSAC	2 cut(s)	213, 926
NspI	RCATGY	1 cut(s)	27
PaeI	GCATGC	1 cut(s)	27
PagI	TCATGA	1 cut(s)	550
PcsI	WCGNNNNNNNCGW	1 cut(s)	801
PctI	GAATGC	1 cut(s)	154
PkrI	GCNGC	2 cut(s)	57, 258
PleI	GAGTC	1 cut(s)	41
PpsI	GAGTC	1 cut(s)	41
Psp124BI	GAGCTC	1 cut(s)	591
Psp1406I	AACGTT	1 cut(s)	516
Psp6I	CCWGG	3 cut(s)	381, 608, 833
PspGI	CCWGG	3 cut(s)	381, 608, 833
PspN4I	GGNNCC	1 cut(s)	474
PspPI	GGNCC	1 cut(s)	898
PsuI	RGATCY	2 cut(s)	202, 597
PvuII	CAGCTG	1 cut(s)	625
RsaI	GTAC	2 cut(s)	18, 647
RsaNI	GTAC	2 cut(s)	17, 646
RseI	CAYNNNNRTG	2 cut(s)	147, 576
SacI	GAGCTC	1 cut(s)	591
SaqAI	TTAA	2 cut(s)	12, 861
SatI	GCNGC	2 cut(s)	56, 257
Sau3AI	GATC	4 cut(s)	123, 154, 202, 597
Sau96I	GGNCC	1 cut(s)	898
SchI	GAGTC	1 cut(s)	41
ScrFI	CCNGG	3 cut(s)	383, 610, 835
SduI	GDGCHC	2 cut(s)	110, 591
SexAI	ACCWGGT	1 cut(s)	381
SfaNI	GCATC	4 cut(s)	277, 280, 682, 862
SinI	GGWCC	1 cut(s)	898
SmiMI	CAYNNNNRTG	2 cut(s)	147, 576
SmlI	CTYRAG	2 cut(s)	209, 232
SmoI	CTYRAG	2 cut(s)	209, 232
SphI	GCATGC	1 cut(s)	27
Sse9I	AATT	6 cut(s)	88, 168, 331, 713, 858, 906
SsiI	CCGC	2 cut(s)	460, 901
SspMI	CTAG	2 cut(s)	360, 819
SstI	GAGCTC	1 cut(s)	591
StyD4I	CCNGG	3 cut(s)	381, 608, 833
TaaI	ACNGT	2 cut(s)	523, 887
TaiI	ACGT	1 cut(s)	519
TaqI	TCGA	1 cut(s)	856
TasI	AATT	6 cut(s)	88, 168, 331, 713, 858, 906
TatI	WGTACW	1 cut(s)	645
Tru1I	TTAA	2 cut(s)	12, 861
Tru9I	TTAA	2 cut(s)	12, 861
TscAI	CASTG	4 cut(s)	222, 273, 892, 957
TseFI	GTSAC	2 cut(s)	213, 926
TseI	GCWGC	2 cut(s)	55, 256
Tsp45I	GTSAC	2 cut(s)	213, 926
TspDTI	ATGAA	5 cut(s)	387, 431, 513, 522, 539
TspRI	CASTG	4 cut(s)	222, 273, 892, 957
VpaK11BI	GGWCC	1 cut(s)	898
XagI	CCTNNNNNAGG	1 cut(s)	425
XceI	RCATGY	1 cut(s)	27
XspI	CTAG	2 cut(s)	360, 819

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.