Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004650

Physical Location & Seq

Genomic Coordinates Forward (+)

25973804 .. 25975726

Gene Structure 1923 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G65020.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGGCGTCTCTCAAAGTCCCAAGCAATGTTCCTCTTCCCGAAGATGACGCCGAGCAACTCCACAAGGCTTTTTCAGGATGGGGTACCAACGAGAAGCTGATCATATCAATACTAGCTCACAGGAACGCAGCACAACGCAGCTTGATCCGCAGCGTTTATGCAGCTACCTACAATGAGGATCTTCTCAAAGCATTAGACAAAGAGCTTTCTAGCGACTTTGAGAGAGCTGTGATGTTGTGGACTCTTGATCCACCAGAGAGAGATGCTTATTTGGCTAAAGAATCCACCAAGATGTTCACCAAGAACAATTGGGTTCTTGTTGAAATCGCTTGCACAAGGCCTGCTCTTGAGCTTATCAAGGTCAAGCAAGCTTACCAAGCTCGATACAAGAAATCAATCGAGGAAGATGTCGCGCAACACACATCTGGTGACCTTCGTAAGCTCTTGCTTCCTCTTGTGAGCACTTTCAGGTATGAAGGAGATGATGTGAACATGATGCTTGCAAGATCTGAAGCTAAGATACTTCACGAGAAGGTCTCAGAGAAATCTTACAGTGACGATGACTTCATCAGAATCTTGACAACAAGAAGCAAAGCACAGCTCGGTGCAACACTCAACCACTACAACAACGAGTATGGAAACGCCATTAACAAGAACTTGAAGGAAGAGTCGGACGACAATGACTACATGAAACTACTAAGAGCTGTAATCACATGTTTGACATACCCTGAGAAGCATTTTGAGAAGGTTCTTCGTCTATCAATCAACAAAATGGGAACAGACGAATGGGGACTAACCCGAGTCGTGACTACACGAACTGAAGTTGACATGGAACGCATCAAAGAGGAATATCAGCGAAGAAACAGCATTCCTTTGGACCGTGCTATCGCCAAAGACACTTCTGGTGACTATGAGGACATGCTTGTTGCTCTTCTCGGACATGGCGATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006810 GO:0006950 GO:0006970 GO:0008150 GO:0008643 GO:0009266 GO:0009314 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009416 GO:0009579 GO:0009628 GO:0009639 GO:0009651 GO:0010035 GO:0015774 GO:0016020 GO:0033036 GO:0033037 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0050896 GO:0051179 GO:0051234 GO:0071702 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Annexin

Protein Analysis

317

Amino Acids

36.27

Weight (kDa)

5.76

Isoelectric Point (pI)

41.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Annexin	PF00191	9 - 64	2e-17	Annexin
Annexin	PF00191	72 - 137	1.5e-17	Annexin
Annexin	PF00191	156 - 220	2.1e-13	Annexin
Annexin	PF00191	233 - 296	5.9e-18	Annexin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004650)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35720 AT5G65020 AT5G65020
fragaria_vesca	FvH4_1g20930 FvH4_1g20930 FvH4_1g20930 FvH4_1g20930 FvH4_1g20930 FvH4_1g20930 FvH4_1g20930
malus_domestica	MD01G1029100.v1.1 MD04G1000900.v1.1
prunus_persica	Prupe.6G186600_v2.0.a1
pyrus_communis	pycom01g05720
rosa_chinensis	RchiOBHm_Chr2g0114411 RchiOBHm_Chr2g0114431
rosa_laevigata	RLG00000018099 RLG00000018100
rosa_multiflora	Rmu_co8507663.1_g000001 Rmu_co8512843.1_g000002 Rmu_sc0000431.1_g000032
rosa_roxburghii	Rroxscaffold_2G00130130 Rroxscaffold_2G00130140
rosa_rugosa	Rorug02G0190300
rosa_samantha	Rh2AG247400 Rh2BG257200 Rh2BG257300 Rh2CG250900 Rh2DG255400
rosa_wichuraiana	Rw2G019220 Rw2G019230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	83
AccB1I	GGYRCC	1 cut(s)	83
AccII	CGCG	1 cut(s)	413
AciI	CCGC	1 cut(s)	148
AclWI	GGATC	3 cut(s)	139, 186, 242
AcuI	CTGAAG	2 cut(s)	531, 840
AcyI	GRCGYC	2 cut(s)	5, 48
AfaI	GTAC	1 cut(s)	85
AflIII	ACRYGT	1 cut(s)	713
AgsI	TTSAA	2 cut(s)	323, 661
Alw21I	GWGCWC	1 cut(s)	464
Alw26I	GTCTC	2 cut(s)	12, 541
AlwI	GGATC	3 cut(s)	139, 186, 242
Ama87I	CYCGRG	1 cut(s)	798
AoxI	GGCC	1 cut(s)	338
ApeKI	GCWGC	4 cut(s)	128, 138, 150, 161
Asp718I	GGTACC	1 cut(s)	83
AspLEI	GCGC	1 cut(s)	415
AspS9I	GGNCC	1 cut(s)	877
AsuHPI	GGTGA	3 cut(s)	289, 440, 917
AvaI	CYCGRG	1 cut(s)	798
AvaII	GGWCC	1 cut(s)	877
BanI	GGYRCC	1 cut(s)	83
BarI	GAAGNNNNNNTAC	2 cut(s)	504, 536
BauI	CACGAG	1 cut(s)	527
Bbv12I	GWGCWC	1 cut(s)	464
BbvI	GCAGC	4 cut(s)	140, 150, 162, 173
BccI	CCATC	1 cut(s)	72
BclI	TGATCA	1 cut(s)	99
BcoDI	GTCTC	2 cut(s)	12, 541
BfaI	CTAG	2 cut(s)	113, 210
BglII	AGATCT	1 cut(s)	506
BisI	GCNGC	4 cut(s)	129, 139, 151, 162
BlsI	GCNGC	4 cut(s)	130, 140, 152, 163
Bme18I	GGWCC	1 cut(s)	877
BmeT110I	CYCGRG	1 cut(s)	798
BmgT120I	GGNCC	1 cut(s)	877
BmiI	GGNNCC	1 cut(s)	85
BmsI	GCATC	4 cut(s)	253, 486, 846, 937
BplI	GAGNNNNNCTC	2 cut(s)	521, 553
BpuEI	CTTGAG	1 cut(s)	368
BsaHI	GRCGYC	2 cut(s)	5, 48
BsaI	GGTCTC	1 cut(s)	541
BsaXI	ACNNNNNCTCC	2 cut(s)	471, 501
Bse3DI	GCAATG	1 cut(s)	31
BseGI	GGATG	1 cut(s)	83
BseMI	GCAATG	1 cut(s)	31
BseMII	CTCAG	2 cut(s)	552, 720
BseXI	GCAGC	4 cut(s)	140, 150, 162, 173
Bsh1236I	CGCG	1 cut(s)	413
BshFI	GGCC	1 cut(s)	340
BshNI	GGYRCC	1 cut(s)	83
BsiHKAI	GWGCWC	1 cut(s)	464
BsiHKCI	CYCGRG	1 cut(s)	798
BslFI	GGGAC	2 cut(s)	2, 804
BsmAI	GTCTC	2 cut(s)	12, 541
BsmBI	CGTCTC	1 cut(s)	12
BsmFI	GGGAC	2 cut(s)	2, 804
BsmI	GAATGC	1 cut(s)	867
BsnI	GGCC	1 cut(s)	340
Bso31I	GGTCTC	1 cut(s)	541
BsoBI	CYCGRG	1 cut(s)	798
Bsp1286I	GDGCHC	1 cut(s)	464
Bsp143I	GATC	5 cut(s)	99, 144, 178, 247, 506
BspACI	CCGC	1 cut(s)	148
BspANI	GGCC	1 cut(s)	340
BspCNI	CTCAG	2 cut(s)	551, 721
BspFNI	CGCG	1 cut(s)	413
BspLI	GGNNCC	1 cut(s)	85
BspPI	GGATC	3 cut(s)	139, 186, 242
BspQI	GCTCTTC	1 cut(s)	936
BspT107I	GGYRCC	1 cut(s)	83
BspTNI	GGTCTC	1 cut(s)	541
BsrDI	GCAATG	1 cut(s)	31
BssMI	GATC	5 cut(s)	99, 144, 178, 247, 506
BssNI	GRCGYC	2 cut(s)	5, 48
BssSI	CACGAG	1 cut(s)	527
Bst2BI	CACGAG	1 cut(s)	527
Bst4CI	ACNGT	2 cut(s)	554, 881
Bst6I	CTCTTC	3 cut(s)	39, 660, 936
BstACI	GRCGYC	2 cut(s)	5, 48
BstC8I	GCNNGC	4 cut(s)	331, 342, 369, 501
BstDEI	CTNAG	4 cut(s)	516, 538, 698, 729
BstEII	GGTNACC	1 cut(s)	428
BstF5I	GGATG	1 cut(s)	83
BstFNI	CGCG	1 cut(s)	413
BstHHI	GCGC	1 cut(s)	415
BstKTI	GATC	5 cut(s)	102, 147, 181, 250, 509
BstMAI	GTCTC	2 cut(s)	12, 541
BstMBI	GATC	5 cut(s)	99, 144, 178, 247, 506
BstMWI	GCNNNNNNNGC	3 cut(s)	147, 272, 377
BstNSI	RCATGY	2 cut(s)	717, 922
BstPI	GGTNACC	1 cut(s)	428
BstUI	CGCG	1 cut(s)	413
BstV1I	GCAGC	4 cut(s)	140, 150, 162, 173
BstX2I	RGATCY	2 cut(s)	178, 506
BstYI	RGATCY	2 cut(s)	178, 506
BsuRI	GGCC	1 cut(s)	340
BtsCI	GGATG	1 cut(s)	83
BtsIMutI	CAGTG	1 cut(s)	559
Cac8I	GCNNGC	4 cut(s)	331, 342, 369, 501
CfoI	GCGC	1 cut(s)	415
Cfr13I	GGNCC	1 cut(s)	877
CseI	GACGC	1 cut(s)	56
Csp6I	GTAC	1 cut(s)	84
CviAII	CATG	6 cut(s)	493, 688, 714, 829, 919, 941
CviQI	GTAC	1 cut(s)	84
DdeI	CTNAG	4 cut(s)	516, 538, 698, 729
DpnI	GATC	5 cut(s)	101, 146, 180, 249, 508
DpnII	GATC	5 cut(s)	99, 144, 178, 247, 506
Eam1104I	CTCTTC	3 cut(s)	39, 660, 936
EarI	CTCTTC	3 cut(s)	39, 660, 936
Eco147I	AGGCCT	1 cut(s)	340
Eco31I	GGTCTC	1 cut(s)	541
Eco47I	GGWCC	1 cut(s)	877
Eco57I	CTGAAG	2 cut(s)	531, 840
Eco88I	CYCGRG	1 cut(s)	798
Eco91I	GGTNACC	1 cut(s)	428
EcoO65I	GGTNACC	1 cut(s)	428
Esp3I	CGTCTC	1 cut(s)	12
FaeI	CATG	6 cut(s)	496, 691, 717, 832, 922, 944
FaqI	GGGAC	2 cut(s)	2, 804
FatI	CATG	6 cut(s)	492, 687, 713, 828, 918, 940
FbaI	TGATCA	1 cut(s)	99
Fnu4HI	GCNGC	4 cut(s)	129, 139, 151, 162
FokI	GGATG	1 cut(s)	90
Fsp4HI	GCNGC	4 cut(s)	129, 139, 151, 162
FspBI	CTAG	2 cut(s)	113, 210
GlaI	GCGC	1 cut(s)	414
GluI	GCNGC	4 cut(s)	129, 139, 151, 162
HaeIII	GGCC	1 cut(s)	340
HgaI	GACGC	1 cut(s)	56
HhaI	GCGC	1 cut(s)	415
Hin1I	GRCGYC	2 cut(s)	5, 48
Hin1II	CATG	6 cut(s)	496, 691, 717, 832, 922, 944
Hin6I	GCGC	1 cut(s)	413
HinP1I	GCGC	1 cut(s)	413
HincII	GTYRAC	1 cut(s)	826
HindII	GTYRAC	1 cut(s)	826
HindIII	AAGCTT	1 cut(s)	369
HinfI	GANTC	5 cut(s)	241, 281, 573, 668, 801
HphI	GGTGA	3 cut(s)	289, 440, 917
Hpy166II	GTNNAC	4 cut(s)	240, 297, 490, 826
Hpy188I	TCNGA	5 cut(s)	511, 541, 572, 673, 938
Hpy188III	TCNNGA	7 cut(s)	38, 75, 245, 347, 527, 577, 805
Hpy8I	GTNNAC	4 cut(s)	240, 297, 490, 826
HpyAV	CCTTC	5 cut(s)	443, 470, 526, 655, 739
HpyCH4III	ACNGT	2 cut(s)	554, 881
HpyCH4V	TGCA	4 cut(s)	161, 333, 503, 608
HpyF10VI	GCNNNNNNNGC	3 cut(s)	147, 272, 377
HpyF3I	CTNAG	4 cut(s)	516, 538, 698, 729
Hsp92I	GRCGYC	2 cut(s)	5, 48
Hsp92II	CATG	6 cut(s)	496, 691, 717, 832, 922, 944
HspAI	GCGC	1 cut(s)	413
KpnI	GGTACC	1 cut(s)	87
Ksp22I	TGATCA	1 cut(s)	99
Kzo9I	GATC	5 cut(s)	99, 144, 178, 247, 506
LguI	GCTCTTC	1 cut(s)	936
LpnPI	CCDG	8 cut(s)	60, 106, 267, 354, 411, 454, 741, 888
Lsp1109I	GCAGC	4 cut(s)	140, 150, 162, 173
LweI	GCATC	4 cut(s)	253, 486, 846, 937
MaeI	CTAG	2 cut(s)	113, 210
MaeIII	GTNAC	4 cut(s)	428, 554, 805, 905
MalI	GATC	5 cut(s)	101, 146, 180, 249, 508
MboI	GATC	5 cut(s)	99, 144, 178, 247, 506
MboII	GAAGA	8 cut(s)	26, 53, 173, 416, 677, 743, 870, 923
MfeI	CAATTG	1 cut(s)	307
MflI	RGATCY	2 cut(s)	178, 506
MhlI	GDGCHC	1 cut(s)	464
MluCI	AATT	1 cut(s)	307
MlyI	GAGTC	3 cut(s)	235, 677, 810
MmeI	TCCRAC	1 cut(s)	651
MnlI	CCTC	6 cut(s)	42, 169, 394, 462, 838, 907
MseI	TTAA	1 cut(s)	648
MslI	CAYNNNNRTG	2 cut(s)	290, 945
MunI	CAATTG	1 cut(s)	307
Mva1269I	GAATGC	1 cut(s)	867
MvnI	CGCG	1 cut(s)	413
MwoI	GCNNNNNNNGC	3 cut(s)	147, 272, 377
NdeII	GATC	5 cut(s)	99, 144, 178, 247, 506
NlaIII	CATG	6 cut(s)	496, 691, 717, 832, 922, 944
NlaIV	GGNNCC	1 cut(s)	85
NmeAIII	GCCGAG	1 cut(s)	76
NmuCI	GTSAC	4 cut(s)	428, 554, 805, 905
NspI	RCATGY	2 cut(s)	717, 922
PceI	AGGCCT	1 cut(s)	340
PciI	ACATGT	1 cut(s)	713
PciSI	GCTCTTC	1 cut(s)	936
PcsI	WCGNNNNNNNCGW	1 cut(s)	942
PctI	GAATGC	1 cut(s)	867
PfeI	GAWTC	2 cut(s)	281, 573
PkrI	GCNGC	4 cut(s)	130, 140, 152, 163
PleI	GAGTC	3 cut(s)	235, 676, 809
PpsI	GAGTC	3 cut(s)	235, 676, 809
PscI	ACATGT	1 cut(s)	713
PspEI	GGTNACC	1 cut(s)	428
PspN4I	GGNNCC	1 cut(s)	85
PspPI	GGNCC	1 cut(s)	877
PsuI	RGATCY	2 cut(s)	178, 506
RsaI	GTAC	1 cut(s)	85
RsaNI	GTAC	1 cut(s)	84
RseI	CAYNNNNRTG	2 cut(s)	290, 945
SapI	GCTCTTC	1 cut(s)	936
SaqAI	TTAA	1 cut(s)	648
SatI	GCNGC	4 cut(s)	129, 139, 151, 162
Sau3AI	GATC	5 cut(s)	99, 144, 178, 247, 506
Sau96I	GGNCC	1 cut(s)	877
SchI	GAGTC	3 cut(s)	235, 677, 810
SduI	GDGCHC	1 cut(s)	464
SfaNI	GCATC	4 cut(s)	253, 486, 846, 937
SinI	GGWCC	1 cut(s)	877
SmiMI	CAYNNNNRTG	2 cut(s)	290, 945
SmlI	CTYRAG	1 cut(s)	347
SmoI	CTYRAG	1 cut(s)	347
Sse9I	AATT	1 cut(s)	307
SseBI	AGGCCT	1 cut(s)	340
SsiI	CCGC	1 cut(s)	148
SspMI	CTAG	2 cut(s)	113, 210
StuI	AGGCCT	1 cut(s)	340
TaaI	ACNGT	2 cut(s)	554, 881
TaqI	TCGA	2 cut(s)	382, 399
TasI	AATT	1 cut(s)	307
TfiI	GAWTC	2 cut(s)	281, 573
Tru1I	TTAA	1 cut(s)	648
Tru9I	TTAA	1 cut(s)	648
TscAI	CASTG	1 cut(s)	559
TseFI	GTSAC	4 cut(s)	428, 554, 805, 905
TseI	GCWGC	4 cut(s)	128, 138, 150, 161
Tsp45I	GTSAC	4 cut(s)	428, 554, 805, 905
TspDTI	ATGAA	3 cut(s)	489, 556, 704
TspRI	CASTG	1 cut(s)	559
VpaK11BI	GGWCC	1 cut(s)	877
XceI	RCATGY	2 cut(s)	717, 922
XspI	CTAG	2 cut(s)	113, 210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.