Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0004650

Physical Location & Seq

Genomic Coordinates Forward (+)

27078891 .. 27082128

Gene Structure 3238 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG257200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGCGACTCTTCAAGTACCAGCATGCGTTCCTTCTCCTGCTGAGGACTCTGAGCAGCTCAAGAAGGCTTTTGAAGGATGGGGCACAAATGAGGGCTTGATCATTTCCATATTGGCTCATAGGAATGCTGATCAGAGAAGACTAATTCAGCAGACTTATGCTGAAACTTATGGGGAGGATCTTCTCAAGGCACTGGACAAAGAGCTCACAAGTGATTTTGAGCGCGCTTTGCTGCTATGGACGCTGCATCCTTCCGAGCGTGATGCAGTTTTGGCTAATGAGGCTACAAAGAGGTTCACTTCAAGCAATTGGGTTCTCATGGAAATAGCTTGTTCTAGATCTTCACATGAACTACACCTGGTAAAGCAGGCTTATCATGCTAAGTTCAAGAAATCCCTTGAAGAGGATGTTGCATTTCATACATCTGGAGACTTCCGCAAGCTTTTGGTACCTCTTGTGAGTGCTTTCCGATATGAAGGAGATGAAGTGAACATTACAGTGGCAAAAAGAGAGGCTAAGATACTTCATGAGAAAGTTAAGGACAAACACTATAATGATGAGGAGCTCATCAGGATCATCACTACCAGAAGTAAGGCACAGCTGAACGCTACTTTCAATCAGTACAACAATGAGTTTGGAAATGCCATTACCAAGGATTTGAAGGCTGATAAGGATGATGAATTCCTCAAATTACTGAGAGCAACTGCCAAACTCTTGACCTTCCCTGAGAAGTACTTTGAGAAGCTTCTGCGTCTGTGTATCAACAAGCTCGGGACAGATGAAGGTGCGCTTACTAGAGTTATTACAACCAGGGCAGAGGTTGACCTGCATCGCATTAAGGAAGAATACCAGCGCAGAAACAGTGTTACTTTGGGCCATGCAATTCAAAAAGACACTAGAGGAGACTATGAGAAGCTGCTTCTGGAACTTATTGGACATGCAGATGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006810 GO:0006950 GO:0006970 GO:0008150 GO:0008643 GO:0009266 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009579 GO:0009628 GO:0009651 GO:0010035 GO:0015774 GO:0016020 GO:0033036 GO:0033037 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0050896 GO:0051179 GO:0051234 GO:0071702 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Annexin

Protein Analysis

316

Amino Acids

36.18

Weight (kDa)

6.44

Isoelectric Point (pI)

36.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Annexin	PF00191	16 - 79	5.4e-21	Annexin
Annexin	PF00191	88 - 152	1.1e-16	Annexin
Annexin	PF00191	171 - 234	9.3e-13	Annexin
Annexin	PF00191	245 - 310	1.8e-17	Annexin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004650)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35720 AT5G65020 AT5G65020
fragaria_vesca	FvH4_1g20930 FvH4_1g20930 FvH4_1g20930 FvH4_1g20930 FvH4_1g20930 FvH4_1g20930 FvH4_1g20930
malus_domestica	MD01G1029100.v1.1 MD04G1000900.v1.1
prunus_persica	Prupe.6G186600_v2.0.a1
pyrus_communis	pycom01g05720
rosa_chinensis	RchiOBHm_Chr2g0114411 RchiOBHm_Chr2g0114431
rosa_laevigata	RLG00000018099 RLG00000018100
rosa_multiflora	Rmu_co8507663.1_g000001 Rmu_co8512843.1_g000002 Rmu_sc0000431.1_g000032
rosa_roxburghii	Rroxscaffold_2G00130130 Rroxscaffold_2G00130140
rosa_rugosa	Rorug02G0190300
rosa_samantha	Rh2AG247400 Rh2BG257200 Rh2BG257300 Rh2CG250900 Rh2DG255400
rosa_wichuraiana	Rw2G019220 Rw2G019230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	834
Acc65I	GGTACC	1 cut(s)	448
AccB1I	GGYRCC	1 cut(s)	448
AccII	CGCG	1 cut(s)	225
AciI	CCGC	1 cut(s)	436
AclWI	GGATC	2 cut(s)	186, 581
AcsI	RAATTY	1 cut(s)	680
AfaI	GTAC	4 cut(s)	18, 450, 623, 734
AfiI	CCNNNNNNNGG	1 cut(s)	403
AgsI	TTSAA	8 cut(s)	14, 74, 303, 388, 401, 616, 661, 887
AjnI	CCWGG	2 cut(s)	357, 809
AluBI	AGCT	9 cut(s)	58, 205, 329, 442, 565, 601, 745, 769, 916
AluI	AGCT	9 cut(s)	58, 205, 329, 442, 565, 601, 745, 769, 916
Alw21I	GWGCWC	2 cut(s)	207, 567
Alw26I	GTCTC	2 cut(s)	423, 897
AlwI	GGATC	2 cut(s)	186, 581
Ama87I	CYCGRG	1 cut(s)	770
AoxI	GGCC	1 cut(s)	874
ApeKI	GCWGC	4 cut(s)	55, 232, 244, 916
ApoI	RAATTY	1 cut(s)	680
Asp718I	GGTACC	1 cut(s)	448
AspLEI	GCGC	4 cut(s)	225, 227, 790, 855
AspS9I	GGNCC	1 cut(s)	874
AvaI	CYCGRG	1 cut(s)	770
BaeGI	GKGCMC	1 cut(s)	86
BanI	GGYRCC	1 cut(s)	448
BanII	GRGCYC	2 cut(s)	207, 567
BbsI	GAAGAC	1 cut(s)	145
Bbv12I	GWGCWC	2 cut(s)	207, 567
BbvCI	CCTCAGC	1 cut(s)	42
BbvI	GCAGC	4 cut(s)	67, 219, 231, 903
BccI	CCATC	1 cut(s)	72
BcgI	CGANNNNNNTGC	2 cut(s)	245, 279
BciT130I	CCWGG	2 cut(s)	359, 811
BclI	TGATCA	2 cut(s)	99, 130
BcoDI	GTCTC	2 cut(s)	423, 897
BfaI	CTAG	3 cut(s)	336, 795, 897
BfuAI	ACCTGC	1 cut(s)	834
BglII	AGATCT	1 cut(s)	338
BisI	GCNGC	4 cut(s)	56, 233, 245, 917
BlsI	GCNGC	4 cut(s)	57, 234, 246, 918
BmcAI	AGTACT	1 cut(s)	734
Bme1390I	CCNGG	2 cut(s)	359, 811
BmeT110I	CYCGRG	1 cut(s)	770
BmgT120I	GGNCC	1 cut(s)	874
BmiI	GGNNCC	1 cut(s)	450
BmrFI	CCNGG	2 cut(s)	359, 811
BmsI	GCATC	4 cut(s)	253, 256, 838, 934
BpiI	GAAGAC	1 cut(s)	145
BpmI	CTGGAG	1 cut(s)	447
Bpu10I	CCTNAGC	1 cut(s)	42
BpuEI	CTTGAG	2 cut(s)	44, 170
BsaJI	CCNNGG	2 cut(s)	651, 810
BsaXI	ACNNNNNCTCC	2 cut(s)	471, 501
Bsc4I	CCNNNNNNNGG	1 cut(s)	403
Bse1I	ACTGG	1 cut(s)	198
BseBI	CCWGG	2 cut(s)	359, 811
BseDI	CCNNGG	2 cut(s)	651, 810
BseGI	GGATG	4 cut(s)	83, 247, 412, 679
BseLI	CCNNNNNNNGG	1 cut(s)	403
BseMII	CTCAG	4 cut(s)	33, 42, 686, 717
BseNI	ACTGG	1 cut(s)	198
BsePI	GCGCGC	1 cut(s)	223
BseRI	GAGGAG	2 cut(s)	575, 915
BseSI	GKGCMC	1 cut(s)	86
BseXI	GCAGC	4 cut(s)	67, 219, 231, 903
Bsh1236I	CGCG	1 cut(s)	225
BshFI	GGCC	1 cut(s)	876
BshNI	GGYRCC	1 cut(s)	448
BsiHKAI	GWGCWC	2 cut(s)	207, 567
BsiHKCI	CYCGRG	1 cut(s)	770
BslFI	GGGAC	1 cut(s)	787
BslI	CCNNNNNNNGG	1 cut(s)	403
BsmAI	GTCTC	2 cut(s)	423, 897
BsmFI	GGGAC	1 cut(s)	787
BsmI	GAATGC	1 cut(s)	130
BsnI	GGCC	1 cut(s)	876
BsoBI	CYCGRG	1 cut(s)	770
Bsp1286I	GDGCHC	3 cut(s)	86, 207, 567
Bsp143I	GATC	5 cut(s)	99, 130, 178, 338, 573
BspACI	CCGC	1 cut(s)	436
BspANI	GGCC	1 cut(s)	876
BspCNI	CTCAG	4 cut(s)	34, 43, 687, 718
BspFNI	CGCG	1 cut(s)	225
BspHI	TCATGA	1 cut(s)	526
BspLI	GGNNCC	1 cut(s)	450
BspMI	ACCTGC	1 cut(s)	834
BspPI	GGATC	2 cut(s)	186, 581
BspT107I	GGYRCC	1 cut(s)	448
BsrI	ACTGG	1 cut(s)	198
BssECI	CCNNGG	2 cut(s)	651, 810
BssHII	GCGCGC	1 cut(s)	223
BssMI	GATC	5 cut(s)	99, 130, 178, 338, 573
BssT1I	CCWWGG	1 cut(s)	651
Bst2UI	CCWGG	2 cut(s)	359, 811
Bst4CI	ACNGT	2 cut(s)	499, 863
Bst6I	CTCTTC	2 cut(s)	15, 396
BstC8I	GCNNGC	4 cut(s)	25, 225, 369, 440
BstDEI	CTNAG	6 cut(s)	42, 51, 381, 516, 695, 726
BstENI	CCTNNNNNAGG	1 cut(s)	401
BstF5I	GGATG	4 cut(s)	83, 247, 412, 679
BstFNI	CGCG	1 cut(s)	225
BstHHI	GCGC	4 cut(s)	225, 227, 790, 855
BstKTI	GATC	5 cut(s)	102, 133, 181, 341, 576
BstMAI	GTCTC	2 cut(s)	423, 897
BstMBI	GATC	5 cut(s)	99, 130, 178, 338, 573
BstMWI	GCNNNNNNNGC	5 cut(s)	229, 241, 272, 281, 377
BstNI	CCWGG	2 cut(s)	359, 811
BstNSI	RCATGY	2 cut(s)	27, 941
BstSCI	CCNGG	2 cut(s)	357, 809
BstSLI	GKGCMC	1 cut(s)	86
BstUI	CGCG	1 cut(s)	225
BstV1I	GCAGC	4 cut(s)	67, 219, 231, 903
BstV2I	GAAGAC	1 cut(s)	145
BstX2I	RGATCY	2 cut(s)	178, 338
BstYI	RGATCY	2 cut(s)	178, 338
BsuRI	GGCC	1 cut(s)	876
BtgZI	GCGATG	1 cut(s)	815
BtsCI	GGATG	4 cut(s)	83, 247, 412, 679
BtsIMutI	CAGTG	3 cut(s)	191, 504, 868
BveI	ACCTGC	1 cut(s)	834
Cac8I	GCNNGC	4 cut(s)	25, 225, 369, 440
CciI	TCATGA	1 cut(s)	526
CfoI	GCGC	4 cut(s)	225, 227, 790, 855
Cfr13I	GGNCC	1 cut(s)	874
CseI	GACGC	2 cut(s)	250, 740
CsiI	ACCWGGT	1 cut(s)	357
Csp6I	GTAC	4 cut(s)	17, 449, 622, 733
CviAII	CATG	7 cut(s)	24, 319, 347, 377, 527, 878, 938
CviQI	GTAC	4 cut(s)	17, 449, 622, 733
DdeI	CTNAG	6 cut(s)	42, 51, 381, 516, 695, 726
DpnI	GATC	5 cut(s)	101, 132, 180, 340, 575
DpnII	GATC	5 cut(s)	99, 130, 178, 338, 573
Eam1104I	CTCTTC	2 cut(s)	15, 396
EarI	CTCTTC	2 cut(s)	15, 396
Ecl136II	GAGCTC	2 cut(s)	205, 565
Eco130I	CCWWGG	1 cut(s)	651
Eco24I	GRGCYC	2 cut(s)	207, 567
Eco53kI	GAGCTC	2 cut(s)	205, 565
Eco88I	CYCGRG	1 cut(s)	770
EcoICRI	GAGCTC	2 cut(s)	205, 565
EcoNI	CCTNNNNNAGG	1 cut(s)	401
EcoRI	GAATTC	1 cut(s)	680
EcoRII	CCWGG	2 cut(s)	357, 809
EcoT14I	CCWWGG	1 cut(s)	651
EcoT38I	GRGCYC	2 cut(s)	207, 567
ErhI	CCWWGG	1 cut(s)	651
FaeI	CATG	7 cut(s)	27, 322, 350, 380, 530, 881, 941
FalI	AAGNNNNNCTT	2 cut(s)	774, 806
FaqI	GGGAC	1 cut(s)	787
FatI	CATG	7 cut(s)	23, 318, 346, 376, 526, 877, 937
FbaI	TGATCA	2 cut(s)	99, 130
Fnu4HI	GCNGC	4 cut(s)	56, 233, 245, 917
FokI	GGATG	4 cut(s)	90, 234, 419, 686
FriOI	GRGCYC	2 cut(s)	207, 567
Fsp4HI	GCNGC	4 cut(s)	56, 233, 245, 917
FspBI	CTAG	3 cut(s)	336, 795, 897
GlaI	GCGC	4 cut(s)	224, 226, 789, 854
GluI	GCNGC	4 cut(s)	56, 233, 245, 917
GsuI	CTGGAG	1 cut(s)	447
HaeIII	GGCC	1 cut(s)	876
HgaI	GACGC	2 cut(s)	250, 740
HhaI	GCGC	4 cut(s)	225, 227, 790, 855
Hin1II	CATG	7 cut(s)	27, 322, 350, 380, 530, 881, 941
Hin6I	GCGC	4 cut(s)	223, 225, 788, 853
HinP1I	GCGC	4 cut(s)	223, 225, 788, 853
HincII	GTYRAC	1 cut(s)	823
HindII	GTYRAC	1 cut(s)	823
HindIII	AAGCTT	2 cut(s)	440, 743
HinfI	GANTC	2 cut(s)	7, 47
Hpy166II	GTNNAC	3 cut(s)	297, 490, 823
Hpy188I	TCNGA	4 cut(s)	52, 135, 256, 470
Hpy188III	TCNNGA	9 cut(s)	61, 336, 388, 426, 527, 571, 715, 772, 923
Hpy8I	GTNNAC	3 cut(s)	297, 490, 823
HpyAV	CCTTC	8 cut(s)	42, 58, 68, 261, 470, 655, 730, 776
HpyCH4III	ACNGT	2 cut(s)	499, 863
HpyCH4V	TGCA	6 cut(s)	247, 266, 413, 829, 881, 941
HpyF10VI	GCNNNNNNNGC	5 cut(s)	229, 241, 272, 281, 377
HpyF3I	CTNAG	6 cut(s)	42, 51, 381, 516, 695, 726
Hsp92II	CATG	7 cut(s)	27, 322, 350, 380, 530, 881, 941
HspAI	GCGC	4 cut(s)	223, 225, 788, 853
KpnI	GGTACC	1 cut(s)	452
Ksp22I	TGATCA	2 cut(s)	99, 130
Kzo9I	GATC	5 cut(s)	99, 130, 178, 338, 573
LmnI	GCTCC	1 cut(s)	562
Lsp1109I	GCAGC	4 cut(s)	67, 219, 231, 903
LweI	GCATC	4 cut(s)	253, 256, 838, 934
MabI	ACCWGGT	1 cut(s)	357
MaeI	CTAG	3 cut(s)	336, 795, 897
MaeIII	GTNAC	1 cut(s)	865
MalI	GATC	5 cut(s)	101, 132, 180, 340, 575
MboI	GATC	5 cut(s)	99, 130, 178, 338, 573
MboII	GAAGA	5 cut(s)	150, 173, 333, 413, 854
MfeI	CAATTG	1 cut(s)	307
MflI	RGATCY	2 cut(s)	178, 338
MhlI	GDGCHC	3 cut(s)	86, 207, 567
MluCI	AATT	5 cut(s)	144, 307, 680, 689, 882
MlyI	GAGTC	1 cut(s)	41
MseI	TTAA	2 cut(s)	537, 837
MslI	CAYNNNNRTG	4 cut(s)	123, 497, 552, 942
MspA1I	CMGCKG	1 cut(s)	601
MspR9I	CCNGG	2 cut(s)	359, 811
MunI	CAATTG	1 cut(s)	307
Mva1269I	GAATGC	1 cut(s)	130
MvaI	CCWGG	2 cut(s)	359, 811
MvnI	CGCG	1 cut(s)	225
MwoI	GCNNNNNNNGC	5 cut(s)	229, 241, 272, 281, 377
NdeII	GATC	5 cut(s)	99, 130, 178, 338, 573
NlaIII	CATG	7 cut(s)	27, 322, 350, 380, 530, 881, 941
NlaIV	GGNNCC	1 cut(s)	450
NspI	RCATGY	2 cut(s)	27, 941
PaeI	GCATGC	1 cut(s)	27
PagI	TCATGA	1 cut(s)	526
PauI	GCGCGC	1 cut(s)	223
PctI	GAATGC	1 cut(s)	130
PkrI	GCNGC	4 cut(s)	57, 234, 246, 918
PleI	GAGTC	1 cut(s)	41
PpsI	GAGTC	1 cut(s)	41
Psp124BI	GAGCTC	2 cut(s)	207, 567
Psp6I	CCWGG	2 cut(s)	357, 809
PspGI	CCWGG	2 cut(s)	357, 809
PspN4I	GGNNCC	1 cut(s)	450
PspPI	GGNCC	1 cut(s)	874
PsuI	RGATCY	2 cut(s)	178, 338
PteI	GCGCGC	1 cut(s)	223
PvuII	CAGCTG	1 cut(s)	601
RsaI	GTAC	4 cut(s)	18, 450, 623, 734
RsaNI	GTAC	4 cut(s)	17, 449, 622, 733
RseI	CAYNNNNRTG	4 cut(s)	123, 497, 552, 942
SacI	GAGCTC	2 cut(s)	207, 567
SaqAI	TTAA	2 cut(s)	537, 837
SatI	GCNGC	4 cut(s)	56, 233, 245, 917
Sau3AI	GATC	5 cut(s)	99, 130, 178, 338, 573
Sau96I	GGNCC	1 cut(s)	874
ScaI	AGTACT	1 cut(s)	734
SchI	GAGTC	1 cut(s)	41
ScrFI	CCNGG	2 cut(s)	359, 811
SduI	GDGCHC	3 cut(s)	86, 207, 567
SexAI	ACCWGGT	1 cut(s)	357
SfaNI	GCATC	4 cut(s)	253, 256, 838, 934
SmiMI	CAYNNNNRTG	4 cut(s)	123, 497, 552, 942
SmlI	CTYRAG	2 cut(s)	59, 185
SmoI	CTYRAG	2 cut(s)	59, 185
SphI	GCATGC	1 cut(s)	27
Sse9I	AATT	5 cut(s)	144, 307, 680, 689, 882
SsiI	CCGC	1 cut(s)	436
SspMI	CTAG	3 cut(s)	336, 795, 897
SstI	GAGCTC	2 cut(s)	207, 567
StyD4I	CCNGG	2 cut(s)	357, 809
StyI	CCWWGG	1 cut(s)	651
TaaI	ACNGT	2 cut(s)	499, 863
TasI	AATT	5 cut(s)	144, 307, 680, 689, 882
TatI	WGTACW	2 cut(s)	621, 732
Tru1I	TTAA	2 cut(s)	537, 837
Tru9I	TTAA	2 cut(s)	537, 837
TscAI	CASTG	3 cut(s)	198, 504, 868
TseI	GCWGC	4 cut(s)	55, 232, 244, 916
TspDTI	ATGAA	7 cut(s)	363, 407, 489, 498, 515, 693, 795
TspRI	CASTG	3 cut(s)	198, 504, 868
XagI	CCTNNNNNAGG	1 cut(s)	401
XapI	RAATTY	1 cut(s)	680
XbaI	TCTAGA	1 cut(s)	335
XceI	RCATGY	2 cut(s)	27, 941
XspI	CTAG	3 cut(s)	336, 795, 897
ZrmI	AGTACT	1 cut(s)	734

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.