Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0004650

Physical Location & Seq

Genomic Coordinates Forward (+)

27847534 .. 27850165

Gene Structure 2632 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG247400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGCGACTCTTAAAGTACCAGCATGCGTTCCTTCTCCGGCTGAGGACTCTGAGCAGCTCAGGAAGGCTTTTGAAGGATGGGGCACAAATGAGGCATTGATCATTTCCATATTGGCTCACAGGAATGCAGATCAGAGAAGACTAATTCAGCAGACTTATGCTGAAACCTATGGGGAGGACCTTCTCAAGTCACTGGACAAAGAACTCTCAAGTGATTTTGAGCGAGCTGTGCTGCTGTGGACACTGCATCCTTCTGAGCGTGATGCAGTTTTGGCTAATGAGGCTACAAAGAGGTTCACTTCAAGCAATTGGGTTCTCATGGAAATAGCTTGTTCTAGGTCTTCACATGAACTTCACCTGGTAAAGCAGGCTTACCATGCTAAGTTCAAGAAATCCCTTGAAGAGGATGTTGCATTTCATACATCTGGAGACTTCCGCAAGCTTTTGGTGCCTCTTGTGAGTGCTTTCCGATATGAAGGAGATGAAGTGAACGTTACAGTAGCAAAAAGAGAGGCTAAGATACTTCATGAGAAAATCAAGGACAAACACTACAATGATGAGGAGCTCATCAGGATCTTCACTACCAGGAGTAAGGCACAGCTGAACGCTACTTTCAATCAGTACAACAATGAGTTTGGAAATGCCATTACAAAGGATTTGAAGGCTGATGCAGATGATGAGTTCCTCAAATTACTGAGAGCAACTGCCAAACTGTTGACCTTCCCTGAGAAATACTTTGAGAAGCTTCTGCGTCTGTGTATCAACAAGCTCGGGACAGATGAAGGTGCGCTTACTAGAGTTATTACCACAAGGGCTGAGGTTGACCTCCATCGCATTAAAGAAGAATACCAGCGCCGAAACAGTGTTCCTTTGGACCACGCAATTGAGAAGGACACTTCTGGTGACTATGAGAAATTTCTTCTGGCACTGCTTGGACATGGAGATTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006810 GO:0006950 GO:0006970 GO:0008150 GO:0008643 GO:0009266 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009579 GO:0009628 GO:0009651 GO:0010035 GO:0015774 GO:0016020 GO:0033036 GO:0033037 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0050896 GO:0051179 GO:0051234 GO:0071702 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Annexin

Protein Analysis

316

Amino Acids

36.17

Weight (kDa)

6.16

Isoelectric Point (pI)

38.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Annexin	PF00191	16 - 79	1.5e-21	Annexin
Annexin	PF00191	88 - 152	1.1e-16	Annexin
Annexin	PF00191	171 - 234	1.2e-13	Annexin
Annexin	PF00191	245 - 310	5.6e-19	Annexin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004650)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35720 AT5G65020 AT5G65020
fragaria_vesca	FvH4_1g20930 FvH4_1g20930 FvH4_1g20930 FvH4_1g20930 FvH4_1g20930 FvH4_1g20930 FvH4_1g20930
malus_domestica	MD01G1029100.v1.1 MD04G1000900.v1.1
prunus_persica	Prupe.6G186600_v2.0.a1
pyrus_communis	pycom01g05720
rosa_chinensis	RchiOBHm_Chr2g0114411 RchiOBHm_Chr2g0114431
rosa_laevigata	RLG00000018099 RLG00000018100
rosa_multiflora	Rmu_co8507663.1_g000001 Rmu_co8512843.1_g000002 Rmu_sc0000431.1_g000032
rosa_roxburghii	Rroxscaffold_2G00130130 Rroxscaffold_2G00130140
rosa_rugosa	Rorug02G0190300
rosa_samantha	Rh2AG247400 Rh2BG257200 Rh2BG257300 Rh2CG250900 Rh2DG255400
rosa_wichuraiana	Rw2G019220 Rw2G019230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	448
AciI	CCGC	1 cut(s)	436
AclI	AACGTT	1 cut(s)	492
AclWI	GGATC	1 cut(s)	581
AcsI	RAATTY	1 cut(s)	914
AfaI	GTAC	2 cut(s)	18, 623
AfiI	CCNNNNNNNGG	1 cut(s)	403
AgsI	TTSAA	6 cut(s)	74, 303, 388, 401, 616, 661
AjnI	CCWGG	2 cut(s)	357, 584
AluBI	AGCT	8 cut(s)	58, 227, 329, 442, 565, 601, 745, 769
AluI	AGCT	8 cut(s)	58, 227, 329, 442, 565, 601, 745, 769
Alw21I	GWGCWC	1 cut(s)	567
Alw26I	GTCTC	1 cut(s)	423
AlwI	GGATC	1 cut(s)	581
Ama87I	CYCGRG	1 cut(s)	770
ApeKI	GCWGC	2 cut(s)	55, 232
ApoI	RAATTY	1 cut(s)	914
AspLEI	GCGC	2 cut(s)	790, 855
AspS9I	GGNCC	2 cut(s)	178, 874
AsuHPI	GGTGA	2 cut(s)	347, 914
AvaI	CYCGRG	1 cut(s)	770
AvaII	GGWCC	2 cut(s)	178, 874
BaeGI	GKGCMC	1 cut(s)	86
BanI	GGYRCC	1 cut(s)	448
BanII	GRGCYC	1 cut(s)	567
BbsI	GAAGAC	2 cut(s)	145, 333
Bbv12I	GWGCWC	1 cut(s)	567
BbvCI	CCTCAGC	2 cut(s)	42, 816
BbvI	GCAGC	2 cut(s)	67, 219
BccI	CCATC	2 cut(s)	72, 837
BciT130I	CCWGG	2 cut(s)	359, 586
BclI	TGATCA	1 cut(s)	99
BcoDI	GTCTC	1 cut(s)	423
BfaI	CTAG	2 cut(s)	336, 795
BfoI	RGCGCY	1 cut(s)	856
BisI	GCNGC	2 cut(s)	56, 233
BlsI	GCNGC	2 cut(s)	57, 234
Bme1390I	CCNGG	2 cut(s)	359, 586
Bme18I	GGWCC	2 cut(s)	178, 874
BmeT110I	CYCGRG	1 cut(s)	770
BmgT120I	GGNCC	2 cut(s)	178, 874
BmiI	GGNNCC	1 cut(s)	450
BmrFI	CCNGG	2 cut(s)	359, 586
BmsI	GCATC	3 cut(s)	253, 256, 658
BpiI	GAAGAC	2 cut(s)	145, 333
BpmI	CTGGAG	1 cut(s)	447
Bpu10I	CCTNAGC	3 cut(s)	42, 59, 816
BpuEI	CTTGAG	2 cut(s)	170, 193
BsaXI	ACNNNNNCTCC	2 cut(s)	471, 501
Bsc4I	CCNNNNNNNGG	1 cut(s)	403
Bse1I	ACTGG	1 cut(s)	198
BseBI	CCWGG	2 cut(s)	359, 586
BseGI	GGATG	3 cut(s)	83, 247, 412
BseLI	CCNNNNNNNGG	1 cut(s)	403
BseMII	CTCAG	7 cut(s)	33, 42, 73, 246, 686, 717, 807
BseNI	ACTGG	1 cut(s)	198
BseRI	GAGGAG	1 cut(s)	575
BseSI	GKGCMC	1 cut(s)	86
BseXI	GCAGC	2 cut(s)	67, 219
BshNI	GGYRCC	1 cut(s)	448
BsiHKAI	GWGCWC	1 cut(s)	567
BsiHKCI	CYCGRG	1 cut(s)	770
BsiSI	CCGG	1 cut(s)	38
BslFI	GGGAC	1 cut(s)	787
BslI	CCNNNNNNNGG	1 cut(s)	403
BsmAI	GTCTC	1 cut(s)	423
BsmFI	GGGAC	1 cut(s)	787
BsmI	GAATGC	1 cut(s)	130
BsoBI	CYCGRG	1 cut(s)	770
Bsp1286I	GDGCHC	2 cut(s)	86, 567
Bsp143I	GATC	3 cut(s)	99, 130, 573
BspACI	CCGC	1 cut(s)	436
BspCNI	CTCAG	7 cut(s)	34, 43, 72, 247, 687, 718, 808
BspHI	TCATGA	1 cut(s)	526
BspLI	GGNNCC	1 cut(s)	450
BspPI	GGATC	1 cut(s)	581
BspT107I	GGYRCC	1 cut(s)	448
BsrI	ACTGG	1 cut(s)	198
BssMI	GATC	3 cut(s)	99, 130, 573
Bst2UI	CCWGG	2 cut(s)	359, 586
Bst4CI	ACNGT	3 cut(s)	499, 714, 863
Bst6I	CTCTTC	1 cut(s)	396
BstC8I	GCNNGC	4 cut(s)	25, 225, 369, 440
BstDEI	CTNAG	9 cut(s)	42, 51, 59, 255, 381, 516, 695, 726, 816
BstENI	CCTNNNNNAGG	1 cut(s)	401
BstF5I	GGATG	3 cut(s)	83, 247, 412
BstH2I	RGCGCY	1 cut(s)	856
BstHHI	GCGC	2 cut(s)	790, 855
BstKTI	GATC	3 cut(s)	102, 133, 576
BstMAI	GTCTC	1 cut(s)	423
BstMBI	GATC	3 cut(s)	99, 130, 573
BstMWI	GCNNNNNNNGC	5 cut(s)	229, 272, 281, 377, 448
BstNI	CCWGG	2 cut(s)	359, 586
BstNSI	RCATGY	1 cut(s)	27
BstSCI	CCNGG	2 cut(s)	357, 584
BstSLI	GKGCMC	1 cut(s)	86
BstV1I	GCAGC	2 cut(s)	67, 219
BstV2I	GAAGAC	2 cut(s)	145, 333
BstX2I	RGATCY	1 cut(s)	573
BstYI	RGATCY	1 cut(s)	573
BtgZI	GCGATG	1 cut(s)	815
BtsCI	GGATG	3 cut(s)	83, 247, 412
BtsI	GCAGTG	2 cut(s)	242, 926
BtsIMutI	CAGTG	4 cut(s)	191, 242, 868, 926
Cac8I	GCNNGC	4 cut(s)	25, 225, 369, 440
CciI	TCATGA	1 cut(s)	526
CfoI	GCGC	2 cut(s)	790, 855
Cfr13I	GGNCC	2 cut(s)	178, 874
CseI	GACGC	1 cut(s)	740
CsiI	ACCWGGT	1 cut(s)	357
Csp6I	GTAC	2 cut(s)	17, 622
CviAII	CATG	6 cut(s)	24, 319, 347, 377, 527, 938
CviQI	GTAC	2 cut(s)	17, 622
DdeI	CTNAG	9 cut(s)	42, 51, 59, 255, 381, 516, 695, 726, 816
DpnI	GATC	3 cut(s)	101, 132, 575
DpnII	GATC	3 cut(s)	99, 130, 573
Eam1104I	CTCTTC	1 cut(s)	396
EarI	CTCTTC	1 cut(s)	396
Ecl136II	GAGCTC	1 cut(s)	565
Eco24I	GRGCYC	1 cut(s)	567
Eco47I	GGWCC	2 cut(s)	178, 874
Eco53kI	GAGCTC	1 cut(s)	565
Eco88I	CYCGRG	1 cut(s)	770
EcoICRI	GAGCTC	1 cut(s)	565
EcoNI	CCTNNNNNAGG	1 cut(s)	401
EcoO109I	RGGNCCY	1 cut(s)	178
EcoRII	CCWGG	2 cut(s)	357, 584
EcoT38I	GRGCYC	1 cut(s)	567
FaeI	CATG	6 cut(s)	27, 322, 350, 380, 530, 941
FalI	AAGNNNNNCTT	2 cut(s)	774, 806
FaqI	GGGAC	1 cut(s)	787
FatI	CATG	6 cut(s)	23, 318, 346, 376, 526, 937
FbaI	TGATCA	1 cut(s)	99
Fnu4HI	GCNGC	2 cut(s)	56, 233
FokI	GGATG	3 cut(s)	90, 234, 419
FriOI	GRGCYC	1 cut(s)	567
Fsp4HI	GCNGC	2 cut(s)	56, 233
FspBI	CTAG	2 cut(s)	336, 795
GlaI	GCGC	2 cut(s)	789, 854
GluI	GCNGC	2 cut(s)	56, 233
GsuI	CTGGAG	1 cut(s)	447
HaeII	RGCGCY	1 cut(s)	856
HapII	CCGG	1 cut(s)	38
HgaI	GACGC	1 cut(s)	740
HhaI	GCGC	2 cut(s)	790, 855
Hin1II	CATG	6 cut(s)	27, 322, 350, 380, 530, 941
Hin6I	GCGC	2 cut(s)	788, 853
HinP1I	GCGC	2 cut(s)	788, 853
HincII	GTYRAC	2 cut(s)	717, 823
HindII	GTYRAC	2 cut(s)	717, 823
HindIII	AAGCTT	2 cut(s)	440, 743
HinfI	GANTC	2 cut(s)	7, 47
HpaII	CCGG	1 cut(s)	38
HphI	GGTGA	2 cut(s)	347, 914
Hpy166II	GTNNAC	5 cut(s)	240, 297, 490, 717, 823
Hpy188I	TCNGA	4 cut(s)	52, 135, 256, 470
Hpy188III	TCNNGA	6 cut(s)	61, 388, 426, 527, 571, 772
Hpy8I	GTNNAC	5 cut(s)	240, 297, 490, 717, 823
HpyCH4III	ACNGT	3 cut(s)	499, 714, 863
HpyCH4IV	ACGT	1 cut(s)	492
HpyCH4V	TGCA	5 cut(s)	128, 247, 266, 413, 671
HpyF10VI	GCNNNNNNNGC	5 cut(s)	229, 272, 281, 377, 448
HpyF3I	CTNAG	9 cut(s)	42, 51, 59, 255, 381, 516, 695, 726, 816
HpySE526I	ACGT	1 cut(s)	492
Hsp92II	CATG	6 cut(s)	27, 322, 350, 380, 530, 941
HspAI	GCGC	2 cut(s)	788, 853
Ksp22I	TGATCA	1 cut(s)	99
Kzo9I	GATC	3 cut(s)	99, 130, 573
LmnI	GCTCC	1 cut(s)	562
Lsp1109I	GCAGC	2 cut(s)	67, 219
LweI	GCATC	3 cut(s)	253, 256, 658
MabI	ACCWGGT	1 cut(s)	357
MaeI	CTAG	2 cut(s)	336, 795
MaeII	ACGT	1 cut(s)	492
MaeIII	GTNAC	3 cut(s)	189, 493, 902
MalI	GATC	3 cut(s)	101, 132, 575
MboI	GATC	3 cut(s)	99, 130, 573
MboII	GAAGA	6 cut(s)	150, 333, 413, 568, 854, 911
MfeI	CAATTG	2 cut(s)	307, 882
MflI	RGATCY	1 cut(s)	573
MhlI	GDGCHC	2 cut(s)	86, 567
MluCI	AATT	5 cut(s)	144, 307, 689, 882, 914
MlyI	GAGTC	1 cut(s)	41
MseI	TTAA	2 cut(s)	12, 837
MslI	CAYNNNNRTG	2 cut(s)	123, 552
MspA1I	CMGCKG	1 cut(s)	601
MspI	CCGG	1 cut(s)	38
MspR9I	CCNGG	2 cut(s)	359, 586
MunI	CAATTG	2 cut(s)	307, 882
Mva1269I	GAATGC	1 cut(s)	130
MvaI	CCWGG	2 cut(s)	359, 586
MwoI	GCNNNNNNNGC	5 cut(s)	229, 272, 281, 377, 448
NdeII	GATC	3 cut(s)	99, 130, 573
NlaIII	CATG	6 cut(s)	27, 322, 350, 380, 530, 941
NlaIV	GGNNCC	1 cut(s)	450
NmuCI	GTSAC	2 cut(s)	189, 902
NspI	RCATGY	1 cut(s)	27
PaeI	GCATGC	1 cut(s)	27
PagI	TCATGA	1 cut(s)	526
PctI	GAATGC	1 cut(s)	130
PkrI	GCNGC	2 cut(s)	57, 234
PleI	GAGTC	1 cut(s)	41
PpsI	GAGTC	1 cut(s)	41
PpuMI	RGGWCCY	1 cut(s)	178
Psp124BI	GAGCTC	1 cut(s)	567
Psp1406I	AACGTT	1 cut(s)	492
Psp5II	RGGWCCY	1 cut(s)	178
Psp6I	CCWGG	2 cut(s)	357, 584
PspGI	CCWGG	2 cut(s)	357, 584
PspN4I	GGNNCC	1 cut(s)	450
PspPI	GGNCC	2 cut(s)	178, 874
PspPPI	RGGWCCY	1 cut(s)	178
PsuI	RGATCY	1 cut(s)	573
PvuII	CAGCTG	1 cut(s)	601
RsaI	GTAC	2 cut(s)	18, 623
RsaNI	GTAC	2 cut(s)	17, 622
RseI	CAYNNNNRTG	2 cut(s)	123, 552
SacI	GAGCTC	1 cut(s)	567
SaqAI	TTAA	2 cut(s)	12, 837
SatI	GCNGC	2 cut(s)	56, 233
Sau3AI	GATC	3 cut(s)	99, 130, 573
Sau96I	GGNCC	2 cut(s)	178, 874
SchI	GAGTC	1 cut(s)	41
ScrFI	CCNGG	2 cut(s)	359, 586
SduI	GDGCHC	2 cut(s)	86, 567
SexAI	ACCWGGT	1 cut(s)	357
SfaNI	GCATC	3 cut(s)	253, 256, 658
SinI	GGWCC	2 cut(s)	178, 874
SmiMI	CAYNNNNRTG	2 cut(s)	123, 552
SmlI	CTYRAG	2 cut(s)	185, 208
SmoI	CTYRAG	2 cut(s)	185, 208
SphI	GCATGC	1 cut(s)	27
Sse9I	AATT	5 cut(s)	144, 307, 689, 882, 914
SsiI	CCGC	1 cut(s)	436
SspMI	CTAG	2 cut(s)	336, 795
SstI	GAGCTC	1 cut(s)	567
StyD4I	CCNGG	2 cut(s)	357, 584
TaaI	ACNGT	3 cut(s)	499, 714, 863
TaiI	ACGT	1 cut(s)	495
TasI	AATT	5 cut(s)	144, 307, 689, 882, 914
TatI	WGTACW	1 cut(s)	621
Tru1I	TTAA	2 cut(s)	12, 837
Tru9I	TTAA	2 cut(s)	12, 837
TscAI	CASTG	4 cut(s)	198, 249, 868, 933
TseFI	GTSAC	2 cut(s)	189, 902
TseI	GCWGC	2 cut(s)	55, 232
Tsp45I	GTSAC	2 cut(s)	189, 902
TspDTI	ATGAA	6 cut(s)	363, 407, 489, 498, 515, 795
TspRI	CASTG	4 cut(s)	198, 249, 868, 933
VpaK11BI	GGWCC	2 cut(s)	178, 874
XagI	CCTNNNNNAGG	1 cut(s)	401
XapI	RAATTY	1 cut(s)	914
XceI	RCATGY	1 cut(s)	27
XspI	CTAG	2 cut(s)	336, 795

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.