Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0004650

Physical Location & Seq

Genomic Coordinates Forward (+)

13044269 .. 13052345

Gene Structure 8077 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g20930.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGCGACTCTTCAAGTACCAGCTTGTGTTCCTTCTCCTGCTGAGGACGCTGAGCAGCTTAAGAAGGCTTTTGAAGGATGGGGCACAAATGAGGGGTTGCTCATTTCCATACTGGCTCACAGGAATGCTGACCAGAGAAGACTAATTCAGCAGACCTATACTGAAACTTATGGAGAGGATCTTCTCAAGGCACTAGACAAAGAACTCTCAAGTAATTTTGAGCGTGCTTTGCTGTTATGGACACTGCATCCTTCCGAGCGTGATGCAGTTTTGGCTAATGAGGCTATAAAGAGGTTCACTTCAAGCAATTGGGTTCTCATGGAAATAGCTTGTTCTAGGTCTTCACATGAACTCCACATGGTAAAGCAGGCTTACCATGCTAAGTTCAAGAAATCCCTTGAAGAGGATGTTGCATTTCATACATCTGGAGACTTCCGCAAGCTTTTGGTTCCTCTTGTGAGTGCTTTCCGATATGAAGGAGATGAAGTGAACGTTACAGTGGCAAAAAGAGAGGCTAAGCTACTTCATGAGAAAATCAAGGACAAACACTACAATGATGAGGAGCTCATCAGGATCATCTCTACCAGGAGCAAGGCACAGCTAAACGCTACTTTCAATCAGTACAACAATGAGTTTGGAAATGCCATTACCAAGGATCTGAAGGCTGATAAGGATGATGAATTCCTCAAATTACTAAGAGCAACTACCAAACTCTTGACCTACCCTGAGAAGTACTTTGAAAAGCTTCTTCGTTTGTGTATCAACAAGCTCGGGACAGATGAAGGTGCACTTACTAGAGTTGTTACTACCAGGGCAGAGGTTGACCTGCATCGTATTAAGGAAGAATACCAACGCAGAAACAGTGTTACTCTGGCCCATGCAATTCAAAAAGACACTAGAGGAGACTATGAGAATCTGCTTCTGGAACTGATTGGACATTCAGATGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006810 GO:0006950 GO:0006970 GO:0008150 GO:0008643 GO:0009266 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009579 GO:0009628 GO:0009651 GO:0010035 GO:0015774 GO:0016020 GO:0033036 GO:0033037 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0050896 GO:0051179 GO:0051234 GO:0071702 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Annexin

Protein Analysis

317

Amino Acids

36.25

Weight (kDa)

6.44

Isoelectric Point (pI)

32.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Annexin	PF00191	16 - 79	1.4e-20	Annexin
Annexin	PF00191	88 - 152	2e-17	Annexin
Annexin	PF00191	171 - 234	3.2e-13	Annexin
Annexin	PF00191	245 - 310	1.3e-18	Annexin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004650)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35720 AT5G65020 AT5G65020
fragaria_vesca	FvH4_1g20930 FvH4_1g20930 FvH4_1g20930 FvH4_1g20930 FvH4_1g20930 FvH4_1g20930 FvH4_1g20930
malus_domestica	MD01G1029100.v1.1 MD04G1000900.v1.1
prunus_persica	Prupe.6G186600_v2.0.a1
pyrus_communis	pycom01g05720
rosa_chinensis	RchiOBHm_Chr2g0114411 RchiOBHm_Chr2g0114431
rosa_laevigata	RLG00000018099 RLG00000018100
rosa_multiflora	Rmu_co8507663.1_g000001 Rmu_co8512843.1_g000002 Rmu_sc0000431.1_g000032
rosa_roxburghii	Rroxscaffold_2G00130130 Rroxscaffold_2G00130140
rosa_rugosa	Rorug02G0190300
rosa_samantha	Rh2AG247400 Rh2BG257200 Rh2BG257300 Rh2CG250900 Rh2DG255400
rosa_wichuraiana	Rw2G019220 Rw2G019230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	834
AciI	CCGC	1 cut(s)	436
AclI	AACGTT	1 cut(s)	492
AclWI	GGATC	3 cut(s)	186, 581, 663
AcsI	RAATTY	1 cut(s)	680
AcuI	CTGAAG	1 cut(s)	680
AfaI	GTAC	3 cut(s)	18, 623, 734
AfiI	CCNNNNNNNGG	1 cut(s)	403
AflII	CTTAAG	1 cut(s)	59
AgsI	TTSAA	8 cut(s)	14, 74, 303, 388, 401, 616, 740, 887
AjnI	CCWGG	2 cut(s)	584, 809
AluBI	AGCT	9 cut(s)	23, 58, 329, 442, 520, 565, 601, 745, 769
AluI	AGCT	9 cut(s)	23, 58, 329, 442, 520, 565, 601, 745, 769
Alw21I	GWGCWC	2 cut(s)	567, 790
Alw26I	GTCTC	2 cut(s)	423, 897
Alw44I	GTGCAC	1 cut(s)	786
AlwI	GGATC	3 cut(s)	186, 581, 663
Ama87I	CYCGRG	1 cut(s)	770
AoxI	GGCC	1 cut(s)	873
ApaLI	GTGCAC	1 cut(s)	786
ApeKI	GCWGC	1 cut(s)	55
ApoI	RAATTY	1 cut(s)	680
Asp700I	GAANNNNTTC	1 cut(s)	744
AspS9I	GGNCC	1 cut(s)	874
AvaI	CYCGRG	1 cut(s)	770
BaeGI	GKGCMC	2 cut(s)	86, 790
BanII	GRGCYC	1 cut(s)	567
BbsI	GAAGAC	2 cut(s)	145, 333
Bbv12I	GWGCWC	2 cut(s)	567, 790
BbvCI	CCTCAGC	1 cut(s)	42
BbvI	GCAGC	1 cut(s)	67
BccI	CCATC	1 cut(s)	72
BcgI	CGANNNNNNTGC	2 cut(s)	245, 279
BciT130I	CCWGG	2 cut(s)	586, 811
BcoDI	GTCTC	2 cut(s)	423, 897
BfaI	CTAG	4 cut(s)	194, 336, 795, 897
BfrI	CTTAAG	1 cut(s)	59
BfuAI	ACCTGC	1 cut(s)	834
BisI	GCNGC	1 cut(s)	56
BlpI	GCTNAGC	2 cut(s)	51, 516
BlsI	GCNGC	1 cut(s)	57
BmcAI	AGTACT	1 cut(s)	734
Bme1390I	CCNGG	2 cut(s)	586, 811
BmeT110I	CYCGRG	1 cut(s)	770
BmgT120I	GGNCC	1 cut(s)	874
BmiI	GGNNCC	1 cut(s)	450
BmrFI	CCNGG	2 cut(s)	586, 811
BmsI	GCATC	4 cut(s)	253, 256, 838, 934
BpiI	GAAGAC	2 cut(s)	145, 333
BpmI	CTGGAG	1 cut(s)	447
Bpu10I	CCTNAGC	1 cut(s)	42
Bpu1102I	GCTNAGC	2 cut(s)	51, 516
BpuEI	CTTGAG	2 cut(s)	170, 193
BsaJI	CCNNGG	2 cut(s)	651, 810
BsaXI	ACNNNNNCTCC	4 cut(s)	336, 366, 471, 501
Bsc4I	CCNNNNNNNGG	1 cut(s)	403
Bse1I	ACTGG	1 cut(s)	117
BseBI	CCWGG	2 cut(s)	586, 811
BseDI	CCNNGG	2 cut(s)	651, 810
BseGI	GGATG	4 cut(s)	83, 247, 412, 679
BseLI	CCNNNNNNNGG	1 cut(s)	403
BseMII	CTCAG	3 cut(s)	33, 42, 717
BseNI	ACTGG	1 cut(s)	117
BseRI	GAGGAG	2 cut(s)	575, 915
BseSI	GKGCMC	2 cut(s)	86, 790
BseXI	GCAGC	1 cut(s)	67
BshFI	GGCC	1 cut(s)	875
BsiHKAI	GWGCWC	2 cut(s)	567, 790
BsiHKCI	CYCGRG	1 cut(s)	770
BslFI	GGGAC	1 cut(s)	787
BslI	CCNNNNNNNGG	1 cut(s)	403
BsmAI	GTCTC	2 cut(s)	423, 897
BsmFI	GGGAC	1 cut(s)	787
BsmI	GAATGC	1 cut(s)	130
BsnI	GGCC	1 cut(s)	875
BsoBI	CYCGRG	1 cut(s)	770
Bsp1286I	GDGCHC	3 cut(s)	86, 567, 790
Bsp143I	GATC	3 cut(s)	178, 573, 655
Bsp1720I	GCTNAGC	2 cut(s)	51, 516
BspACI	CCGC	1 cut(s)	436
BspANI	GGCC	1 cut(s)	875
BspCNI	CTCAG	3 cut(s)	34, 43, 718
BspHI	TCATGA	1 cut(s)	526
BspLI	GGNNCC	1 cut(s)	450
BspMI	ACCTGC	1 cut(s)	834
BspPI	GGATC	3 cut(s)	186, 581, 663
BspTI	CTTAAG	1 cut(s)	59
BsrI	ACTGG	1 cut(s)	117
BssECI	CCNNGG	2 cut(s)	651, 810
BssMI	GATC	3 cut(s)	178, 573, 655
BssT1I	CCWWGG	1 cut(s)	651
Bst2UI	CCWGG	2 cut(s)	586, 811
Bst4CI	ACNGT	2 cut(s)	499, 863
Bst6I	CTCTTC	2 cut(s)	15, 396
BstAFI	CTTAAG	1 cut(s)	59
BstC8I	GCNNGC	3 cut(s)	225, 369, 440
BstDEI	CTNAG	6 cut(s)	42, 51, 381, 516, 695, 726
BstENI	CCTNNNNNAGG	1 cut(s)	401
BstF5I	GGATG	4 cut(s)	83, 247, 412, 679
BstKTI	GATC	3 cut(s)	181, 576, 658
BstMAI	GTCTC	2 cut(s)	423, 897
BstMBI	GATC	3 cut(s)	178, 573, 655
BstMWI	GCNNNNNNNGC	5 cut(s)	47, 229, 272, 281, 377
BstNI	CCWGG	2 cut(s)	586, 811
BstSCI	CCNGG	2 cut(s)	584, 809
BstSLI	GKGCMC	2 cut(s)	86, 790
BstV1I	GCAGC	1 cut(s)	67
BstV2I	GAAGAC	2 cut(s)	145, 333
BstX2I	RGATCY	2 cut(s)	178, 655
BstYI	RGATCY	2 cut(s)	178, 655
BsuRI	GGCC	1 cut(s)	875
BtsCI	GGATG	4 cut(s)	83, 247, 412, 679
BtsI	GCAGTG	1 cut(s)	242
BtsIMutI	CAGTG	3 cut(s)	242, 504, 868
BveI	ACCTGC	1 cut(s)	834
Cac8I	GCNNGC	3 cut(s)	225, 369, 440
CciI	TCATGA	1 cut(s)	526
Cfr13I	GGNCC	1 cut(s)	874
CseI	GACGC	1 cut(s)	56
Csp6I	GTAC	3 cut(s)	17, 622, 733
CviAII	CATG	6 cut(s)	319, 347, 358, 377, 527, 878
CviQI	GTAC	3 cut(s)	17, 622, 733
DdeI	CTNAG	6 cut(s)	42, 51, 381, 516, 695, 726
DpnI	GATC	3 cut(s)	180, 575, 657
DpnII	GATC	3 cut(s)	178, 573, 655
Eam1104I	CTCTTC	2 cut(s)	15, 396
EarI	CTCTTC	2 cut(s)	15, 396
Ecl136II	GAGCTC	1 cut(s)	565
Eco130I	CCWWGG	1 cut(s)	651
Eco24I	GRGCYC	1 cut(s)	567
Eco53kI	GAGCTC	1 cut(s)	565
Eco57I	CTGAAG	1 cut(s)	680
Eco88I	CYCGRG	1 cut(s)	770
EcoICRI	GAGCTC	1 cut(s)	565
EcoNI	CCTNNNNNAGG	1 cut(s)	401
EcoRI	GAATTC	1 cut(s)	680
EcoRII	CCWGG	2 cut(s)	584, 809
EcoT14I	CCWWGG	1 cut(s)	651
EcoT38I	GRGCYC	1 cut(s)	567
ErhI	CCWWGG	1 cut(s)	651
FaeI	CATG	6 cut(s)	322, 350, 361, 380, 530, 881
FalI	AAGNNNNNCTT	2 cut(s)	774, 806
FaqI	GGGAC	1 cut(s)	787
FatI	CATG	6 cut(s)	318, 346, 357, 376, 526, 877
Fnu4HI	GCNGC	1 cut(s)	56
FokI	GGATG	4 cut(s)	90, 234, 419, 686
FriOI	GRGCYC	1 cut(s)	567
Fsp4HI	GCNGC	1 cut(s)	56
FspBI	CTAG	4 cut(s)	194, 336, 795, 897
GluI	GCNGC	1 cut(s)	56
GsuI	CTGGAG	1 cut(s)	447
HaeIII	GGCC	1 cut(s)	875
HgaI	GACGC	1 cut(s)	56
Hin1II	CATG	6 cut(s)	322, 350, 361, 380, 530, 881
HincII	GTYRAC	1 cut(s)	823
HindII	GTYRAC	1 cut(s)	823
HindIII	AAGCTT	2 cut(s)	440, 743
HinfI	GANTC	2 cut(s)	7, 913
Hpy166II	GTNNAC	4 cut(s)	297, 490, 788, 823
Hpy188I	TCNGA	4 cut(s)	256, 470, 660, 943
Hpy188III	TCNNGA	7 cut(s)	388, 426, 527, 571, 715, 772, 923
Hpy8I	GTNNAC	4 cut(s)	297, 490, 788, 823
HpyAV	CCTTC	7 cut(s)	42, 58, 68, 261, 470, 655, 776
HpyCH4III	ACNGT	2 cut(s)	499, 863
HpyCH4IV	ACGT	1 cut(s)	492
HpyCH4V	TGCA	6 cut(s)	247, 266, 413, 788, 829, 881
HpyF10VI	GCNNNNNNNGC	5 cut(s)	47, 229, 272, 281, 377
HpyF3I	CTNAG	6 cut(s)	42, 51, 381, 516, 695, 726
HpySE526I	ACGT	1 cut(s)	492
Hsp92II	CATG	6 cut(s)	322, 350, 361, 380, 530, 881
Kzo9I	GATC	3 cut(s)	178, 573, 655
LmnI	GCTCC	2 cut(s)	562, 588
Lsp1109I	GCAGC	1 cut(s)	67
LweI	GCATC	4 cut(s)	253, 256, 838, 934
MaeI	CTAG	4 cut(s)	194, 336, 795, 897
MaeII	ACGT	1 cut(s)	492
MaeIII	GTNAC	3 cut(s)	493, 802, 865
MalI	GATC	3 cut(s)	180, 575, 657
MboI	GATC	3 cut(s)	178, 573, 655
MboII	GAAGA	6 cut(s)	150, 173, 333, 413, 740, 854
MfeI	CAATTG	1 cut(s)	307
MflI	RGATCY	2 cut(s)	178, 655
MhlI	GDGCHC	3 cut(s)	86, 567, 790
MluCI	AATT	6 cut(s)	144, 214, 307, 680, 689, 882
MroXI	GAANNNNTTC	1 cut(s)	744
MseI	TTAA	2 cut(s)	60, 837
MslI	CAYNNNNRTG	3 cut(s)	123, 552, 942
MspCI	CTTAAG	1 cut(s)	59
MspR9I	CCNGG	2 cut(s)	586, 811
MunI	CAATTG	1 cut(s)	307
Mva1269I	GAATGC	1 cut(s)	130
MvaI	CCWGG	2 cut(s)	586, 811
MwoI	GCNNNNNNNGC	5 cut(s)	47, 229, 272, 281, 377
NdeII	GATC	3 cut(s)	178, 573, 655
NlaIII	CATG	6 cut(s)	322, 350, 361, 380, 530, 881
NlaIV	GGNNCC	1 cut(s)	450
PagI	TCATGA	1 cut(s)	526
PctI	GAATGC	1 cut(s)	130
PdmI	GAANNNNTTC	1 cut(s)	744
PfeI	GAWTC	1 cut(s)	913
PkrI	GCNGC	1 cut(s)	57
Psp124BI	GAGCTC	1 cut(s)	567
Psp1406I	AACGTT	1 cut(s)	492
Psp6I	CCWGG	2 cut(s)	584, 809
PspGI	CCWGG	2 cut(s)	584, 809
PspN4I	GGNNCC	1 cut(s)	450
PspPI	GGNCC	1 cut(s)	874
PsuI	RGATCY	2 cut(s)	178, 655
RsaI	GTAC	3 cut(s)	18, 623, 734
RsaNI	GTAC	3 cut(s)	17, 622, 733
RseI	CAYNNNNRTG	3 cut(s)	123, 552, 942
SacI	GAGCTC	1 cut(s)	567
SaqAI	TTAA	2 cut(s)	60, 837
SatI	GCNGC	1 cut(s)	56
Sau3AI	GATC	3 cut(s)	178, 573, 655
Sau96I	GGNCC	1 cut(s)	874
ScaI	AGTACT	1 cut(s)	734
ScrFI	CCNGG	2 cut(s)	586, 811
SduI	GDGCHC	3 cut(s)	86, 567, 790
SfaNI	GCATC	4 cut(s)	253, 256, 838, 934
SmiMI	CAYNNNNRTG	3 cut(s)	123, 552, 942
SmlI	CTYRAG	3 cut(s)	59, 185, 208
SmoI	CTYRAG	3 cut(s)	59, 185, 208
Sse9I	AATT	6 cut(s)	144, 214, 307, 680, 689, 882
SsiI	CCGC	1 cut(s)	436
SspMI	CTAG	4 cut(s)	194, 336, 795, 897
SstI	GAGCTC	1 cut(s)	567
StyD4I	CCNGG	2 cut(s)	584, 809
StyI	CCWWGG	1 cut(s)	651
TaaI	ACNGT	2 cut(s)	499, 863
TaiI	ACGT	1 cut(s)	495
TasI	AATT	6 cut(s)	144, 214, 307, 680, 689, 882
TatI	WGTACW	2 cut(s)	621, 732
TfiI	GAWTC	1 cut(s)	913
Tru1I	TTAA	2 cut(s)	60, 837
Tru9I	TTAA	2 cut(s)	60, 837
TscAI	CASTG	3 cut(s)	249, 504, 868
TseI	GCWGC	1 cut(s)	55
TspDTI	ATGAA	7 cut(s)	363, 407, 489, 498, 515, 693, 795
TspRI	CASTG	3 cut(s)	249, 504, 868
Vha464I	CTTAAG	1 cut(s)	59
VneI	GTGCAC	1 cut(s)	786
XagI	CCTNNNNNAGG	1 cut(s)	401
XapI	RAATTY	1 cut(s)	680
XmnI	GAANNNNTTC	1 cut(s)	744
XspI	CTAG	4 cut(s)	194, 336, 795, 897
ZrmI	AGTACT	1 cut(s)	734

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.