AT1G35830

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0011007
Physical Location & Seq
Reverse (-)
13320675 .. 13322511
1837 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G35830.1

Sequence Viewer

Length: 909 bp
ATGGATTCTTGTAACAGTGGAAGCTTACAATCTTCGAGCGATGATCACGAGTCTTCATCAACTGGTGCTCCACAAGATCACTCCTCTTTCTTCCTCCCACCCTTCCAACCACCACCGTCTTCCTCCACCTACTACGGTGACCCAACAACCCTCTCTTCCTCCTCCTCCTCCTCCGCTACTTATCTAAACTTTGTCAACAATCTCATCTCCGACGACATTCTTAACCAAACTCATCTCCTCCCTCCTCAACCTCCACCACCTCCTCCTCCTCCTCCTCCCTCTTCTTCCCGAAACCCTAGAAAACGAACAAGAGCTTCAAGAAGAGCTCCTACAACTGTTCTCACCACCGACACTTCTAACTTCAGAGCTATGGTTCAAGAATTCACCGGCGTCCCTGCCTCTCCTTTCTCTCACCCTTTCTCCTCCACTACTCGCCGCTTCGATATTTTCCGATCTCCTTCCGATCCTCTTACTTATAACCCTTTTCGTCCTATCCCTCAAAAACCTTTGAATCCTTCAACATCTTCTTTACTCAACCTTCATCACCACACAACTACTTCCATGACGTTTCCTGATCTACCTCTCCCTCAAACTCACCAAGTTTCTACGTTCCAGTCTCTTTTATCTCATCAACATCATCATCAACCAACACTCTCCTCTCTTCACGACCTTGACTCGATGAATCTTGGAGCATTACAACAAAATCACCATCCTACGGCTGATGATGACAACCACCAGCTAATGATGAGGCAGTTCTCGGAGTTTGATCGCCGGACAGAAAAGCCACCGGAGATTCATAATAACATTTCCTCTTCTTCTTCAGCTCCGATCAAAGGCTCTTCAGGTACTACTACTACTACAACAACAACAGTTGATCCCTGGATTTGCCCTACAGATTCCAATAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

302

Amino Acids

33.21

Weight (kDa)

6.25

Isoelectric Point (pI)

74.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 108 - 135 1.7e-11 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011007)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35830 AT4G39720 AT4G39720 AT4G39720 AT4G39720
fragaria_vesca FvH4_5g37690
malus_domestica MD08G1181100.v1.1 MD15G1366700.v1.1
prunus_persica Prupe.1G514600_v2.0.a1
pyrus_communis pycom08g15480
rosa_chinensis RchiOBHm_Chr7g0239391
rosa_laevigata RLG00000000760
rosa_multiflora Rmu_sc0008456.1_g000009
rosa_roxburghii Rroxscaffold_3G00220970
rosa_rugosa Rorug07G0327800
rosa_samantha Rh7AG481000 Rh7BG453700 Rh7CG499000 Rh7DG467100
rosa_wichuraiana Rw7G040310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 477
AciI CCGC 2 cut(s) 174, 436
AclWI GGATC 2 cut(s) 458, 869
AcsI RAATTY 1 cut(s) 380
AcuI CTGAAG 3 cut(s) 346, 804, 825
AcyI GRCGYC 1 cut(s) 390
AfaI GTAC 1 cut(s) 847
AfiI CCNNNNNNNGG 2 cut(s) 715, 833
AgsI TTSAA 4 cut(s) 318, 377, 511, 519
AjnI CCWGG 1 cut(s) 878
AluBI AGCT 6 cut(s) 24, 314, 326, 368, 739, 824
AluI AGCT 6 cut(s) 24, 314, 326, 368, 739, 824
Alw21I GWGCWC 2 cut(s) 70, 328
Alw26I GTCTC 1 cut(s) 621
AlwI GGATC 2 cut(s) 458, 869
ApoI RAATTY 1 cut(s) 380
AsuHPI GGTGA 7 cut(s) 149, 334, 376, 404, 536, 587, 698
BanII GRGCYC 1 cut(s) 328
BarI GAAGNNNNNNTAC 2 cut(s) 313, 345
BauI CACGAG 1 cut(s) 47
BbsI GAAGAC 2 cut(s) 45, 111
Bbv12I GWGCWC 2 cut(s) 70, 328
BccI CCATC 1 cut(s) 717
BceAI ACGGC 1 cut(s) 732
BciT130I CCWGG 1 cut(s) 880
BclI TGATCA 1 cut(s) 43
BcoDI GTCTC 1 cut(s) 621
BfaI CTAG 1 cut(s) 297
BfmI CTRYAG 1 cut(s) 891
BisI GCNGC 1 cut(s) 436
BlsI GCNGC 1 cut(s) 437
Bme1390I CCNGG 1 cut(s) 880
BmrFI CCNGG 1 cut(s) 880
BpiI GAAGAC 2 cut(s) 45, 111
BsaHI GRCGYC 1 cut(s) 390
BsaJI CCNNGG 1 cut(s) 878
BsaWI WCCGGW 1 cut(s) 787
BsaXI ACNNNNNCTCC 4 cut(s) 52, 82, 404, 434
Bsc4I CCNNNNNNNGG 2 cut(s) 715, 833
Bse118I RCCGGY 1 cut(s) 386
Bse1I ACTGG 2 cut(s) 67, 613
BseBI CCWGG 1 cut(s) 880
BseDI CCNNGG 1 cut(s) 878
BseGI GGATG 1 cut(s) 709
BseLI CCNNNNNNNGG 2 cut(s) 715, 833
BseNI ACTGG 2 cut(s) 67, 613
BsiHKAI GWGCWC 2 cut(s) 70, 328
BsiSI CCGG 3 cut(s) 387, 772, 788
BslFI GGGAC 1 cut(s) 377
BslI CCNNNNNNNGG 2 cut(s) 715, 833
BsmAI GTCTC 1 cut(s) 621
BsmFI GGGAC 1 cut(s) 377
Bsp1286I GDGCHC 2 cut(s) 70, 328
Bsp143I GATC 8 cut(s) 43, 76, 452, 463, 574, 766, 828, 874
BspACI CCGC 2 cut(s) 174, 436
BspPI GGATC 2 cut(s) 458, 869
BspQI GCTCTTC 2 cut(s) 316, 844
BsrFI RCCGGY 1 cut(s) 386
BsrI ACTGG 2 cut(s) 67, 613
BssAI RCCGGY 1 cut(s) 386
BssECI CCNNGG 1 cut(s) 878
BssMI GATC 8 cut(s) 43, 76, 452, 463, 574, 766, 828, 874
BssNI GRCGYC 1 cut(s) 390
BssSI CACGAG 1 cut(s) 47
Bst2BI CACGAG 1 cut(s) 47
Bst2UI CCWGG 1 cut(s) 880
Bst4CI ACNGT 5 cut(s) 17, 117, 137, 337, 871
Bst6I CTCTTC 6 cut(s) 160, 286, 316, 666, 817, 844
BstACI GRCGYC 1 cut(s) 390
BstEII GGTNACC 1 cut(s) 137
BstF5I GGATG 1 cut(s) 709
BstKTI GATC 8 cut(s) 46, 79, 455, 466, 577, 769, 831, 877
BstMAI GTCTC 1 cut(s) 621
BstMBI GATC 8 cut(s) 43, 76, 452, 463, 574, 766, 828, 874
BstNI CCWGG 1 cut(s) 880
BstPI GGTNACC 1 cut(s) 137
BstSCI CCNGG 1 cut(s) 878
BstSFI CTRYAG 1 cut(s) 891
BstV2I GAAGAC 2 cut(s) 45, 111
BtgZI GCGATG 1 cut(s) 54
BtsCI GGATG 1 cut(s) 709
BtsIMutI CAGTG 1 cut(s) 22
Cfr10I RCCGGY 1 cut(s) 386
CseI GACGC 1 cut(s) 379
Csp6I GTAC 1 cut(s) 846
CviAII CATG 1 cut(s) 562
CviJI RGCY 9 cut(s) 24, 314, 326, 368, 719, 739, 784, 824, 837
CviKI_1 RGCY 9 cut(s) 24, 314, 326, 368, 719, 739, 784, 824, 837
CviQI GTAC 1 cut(s) 846
DpnI GATC 8 cut(s) 45, 78, 454, 465, 576, 768, 830, 876
DpnII GATC 8 cut(s) 43, 76, 452, 463, 574, 766, 828, 874
Eam1104I CTCTTC 6 cut(s) 160, 286, 316, 666, 817, 844
EarI CTCTTC 6 cut(s) 160, 286, 316, 666, 817, 844
Ecl136II GAGCTC 1 cut(s) 326
Eco24I GRGCYC 1 cut(s) 328
Eco53kI GAGCTC 1 cut(s) 326
Eco57I CTGAAG 3 cut(s) 346, 804, 825
Eco91I GGTNACC 1 cut(s) 137
EcoICRI GAGCTC 1 cut(s) 326
EcoO65I GGTNACC 1 cut(s) 137
EcoRI GAATTC 1 cut(s) 380
EcoRII CCWGG 1 cut(s) 878
EcoT38I GRGCYC 1 cut(s) 328
FaeI CATG 1 cut(s) 565
FaiI YATR 4 cut(s) 371, 477, 563, 798
FaqI GGGAC 1 cut(s) 377
FatI CATG 1 cut(s) 561
FbaI TGATCA 1 cut(s) 43
Fnu4HI GCNGC 1 cut(s) 436
FokI GGATG 1 cut(s) 696
FriOI GRGCYC 1 cut(s) 328
Fsp4HI GCNGC 1 cut(s) 436
FspBI CTAG 1 cut(s) 297
GluI GCNGC 1 cut(s) 436
HapII CCGG 3 cut(s) 387, 772, 788
HgaI GACGC 1 cut(s) 379
Hin1I GRCGYC 1 cut(s) 390
Hin1II CATG 1 cut(s) 565
HincII GTYRAC 1 cut(s) 196
HindII GTYRAC 1 cut(s) 196
HindIII AAGCTT 1 cut(s) 22
HinfI GANTC 7 cut(s) 5, 50, 511, 674, 682, 793, 896
HpaII CCGG 3 cut(s) 387, 772, 788
HphI GGTGA 7 cut(s) 149, 334, 376, 404, 536, 587, 698
Hpy166II GTNNAC 1 cut(s) 196
Hpy188I TCNGA 6 cut(s) 211, 365, 452, 463, 760, 828
Hpy188III TCNNGA 6 cut(s) 47, 288, 318, 377, 572, 665
Hpy8I GTNNAC 1 cut(s) 196
Hpy99I CGWCG 1 cut(s) 215
HpyAV CCTTC 4 cut(s) 112, 468, 525, 548
HpyCH4III ACNGT 5 cut(s) 17, 117, 137, 337, 871
HpyCH4IV ACGT 2 cut(s) 566, 608
HpySE526I ACGT 2 cut(s) 566, 608
Hsp92I GRCGYC 1 cut(s) 390
Hsp92II CATG 1 cut(s) 565
Ksp22I TGATCA 1 cut(s) 43
Kzo9I GATC 8 cut(s) 43, 76, 452, 463, 574, 766, 828, 874
LguI GCTCTTC 2 cut(s) 316, 844
LmnI GCTCC 4 cut(s) 73, 331, 689, 829
MaeI CTAG 1 cut(s) 297
MaeII ACGT 2 cut(s) 566, 608
MaeIII GTNAC 2 cut(s) 11, 137
MalI GATC 8 cut(s) 45, 78, 454, 465, 576, 768, 830, 876
MboI GATC 8 cut(s) 43, 76, 452, 463, 574, 766, 828, 874
MhlI GDGCHC 2 cut(s) 70, 328
MluCI AATT 2 cut(s) 380, 904
MlyI GAGTC 2 cut(s) 59, 668
MmeI TCCRAC 2 cut(s) 130, 234
MseI TTAA 2 cut(s) 222, 907
MspI CCGG 3 cut(s) 387, 772, 788
MspR9I CCNGG 1 cut(s) 880
MvaI CCWGG 1 cut(s) 880
NdeII GATC 8 cut(s) 43, 76, 452, 463, 574, 766, 828, 874
NlaIII CATG 1 cut(s) 565
NmuCI GTSAC 1 cut(s) 137
PciSI GCTCTTC 2 cut(s) 316, 844
PfeI GAWTC 5 cut(s) 5, 511, 682, 793, 896
PkrI GCNGC 1 cut(s) 437
PleI GAGTC 2 cut(s) 58, 668
PpsI GAGTC 2 cut(s) 58, 668
PsiI TTATAA 1 cut(s) 477
Psp124BI GAGCTC 1 cut(s) 328
Psp6I CCWGG 1 cut(s) 878
PspEI GGTNACC 1 cut(s) 137
PspGI CCWGG 1 cut(s) 878
RsaI GTAC 1 cut(s) 847
RsaNI GTAC 1 cut(s) 846
SacI GAGCTC 1 cut(s) 328
SapI GCTCTTC 2 cut(s) 316, 844
SaqAI TTAA 2 cut(s) 222, 907
SatI GCNGC 1 cut(s) 436
Sau3AI GATC 8 cut(s) 43, 76, 452, 463, 574, 766, 828, 874
SchI GAGTC 2 cut(s) 59, 668
ScrFI CCNGG 1 cut(s) 880
SduI GDGCHC 2 cut(s) 70, 328
SfcI CTRYAG 1 cut(s) 891
SgrAI CRCCGGYG 1 cut(s) 386
Sse9I AATT 2 cut(s) 380, 904
SsiI CCGC 2 cut(s) 174, 436
SspMI CTAG 1 cut(s) 297
SstI GAGCTC 1 cut(s) 328
StyD4I CCNGG 1 cut(s) 878
TaaI ACNGT 5 cut(s) 17, 117, 137, 337, 871
TaiI ACGT 2 cut(s) 569, 611
TaqI TCGA 3 cut(s) 35, 441, 677
TasI AATT 2 cut(s) 380, 904
TauI GCSGC 1 cut(s) 438
TfiI GAWTC 5 cut(s) 5, 511, 682, 793, 896
Tru1I TTAA 2 cut(s) 222, 907
Tru9I TTAA 2 cut(s) 222, 907
TscAI CASTG 1 cut(s) 22
TseFI GTSAC 1 cut(s) 137
Tsp45I GTSAC 1 cut(s) 137
TspDTI ATGAA 4 cut(s) 45, 530, 695, 785
TspRI CASTG 1 cut(s) 22
XapI RAATTY 1 cut(s) 380
XspI CTAG 1 cut(s) 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.