Rroxscaffold_3G00220970

VQ motif

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Forward (+)
3613955 .. 3624640
10686 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00220970.1

Sequence Viewer

Length: 1437 bp
ATGGAAATGTACTTGTGTACAGGACGATGTTGCGAGCTACGGCTAATTGATGGAACTCGTTTGCATGGTCGCCCAATAGTAGTTCCATTGCGTCTTCTTAACGGCTCAACAACGATTTCACGATTCGTCCGCCAAATCAATCTCTTTCAAGCTAATAAGCTAGCTATGGATTCTGGTAATAGTGGAAGCATGTCTTCAAGTGGTGGTGATGATCAAGACCTTGATATTGTTTCACAGCCTGAATCCGTTTCCGGGTTTCTGAATTCGTCTCATCCCACTATGCAATTTGGTGGCTCGTCCGACAACAACCCGAATCTGTTTTCCCAATACCAGAACCACCACCACCACCAACCCAGTACACTTTTTGATCTTTCATCCAGTTATCTCCAGGCATTGTCTCAATCTCAGTCACCAAACTCTTCAAATCCCAATTTCCTGCTCAATCAAAGATCCGATCATGAACCAAACTCCACCACCAATACTGGATCCGATCATCAACAAGCCAACTACACCAACTCGATTGCAAACCTACCAGGTTCATCATCATCAGCTCATCAAGCTCCACCAATATCGGGTACACCACGGGGTAGTTATTCGTCTGCCAAGTCCAATAATTTGGTTCGAAACTCGAAGAAGAGGACGAGAGCTTCTAGGAGGGCGCCGACGACCGTTCTGACCACCGACACCTCGAATTTCAGAGCAATGGTGCAGGAATTCACTGGGATCCCAGCACCGCCGTTCTCTGCAGGCTCGTCATCCTACTCTCGAAGGCTCGATAGTATATTTGGCTCCGGATCTGTCTACCCTTTACGTCCTTCGGCTCAAAAGGTCCACCAAACCCCATTTCTATCTTCTTCTTCTTCTTCATTGTTGATGAGCAATAGTGTTAGTATGGTTGATGCTTCTAATATTGCCACTAGTAGTACTAGTCATGATATGAACAACTTCAATTTCACTCATCAAGGCCTAATTGGGAAACAGCTGCCTCATCATCATAATATGATGGTAAACATGCAAAACCCAGCTCTCAGTGCATTCCAGTCATCCCTTCCCCATCATCATGAGCAGCAGCAGCAGCCACCTCCATTCCTCTCTTCCTCAATTAACTTTGGGGCAAAGCCTAATAGGGACAGTACTACTTTGCCCTTACATCCTCTTGAAGATCAATTGGGTATGACTATGAGCCATGGATATTTAAATAACACAAACCTTGGTGCTTCAGATGGGTCAACAATGCTGCCATTGAGGAGTGATGATAATCATACTGTTAGATGGAGAGATTATGGACTTGGATTGGGCGCTGTCAGCGATGGGAGAGGGGTACTAGATCAAAACCAGCATTTGAGGCCTAATTTGGACCATGGAATAGTTAATTCATCGAGATCAAACACTAGAGGTGAAGCTTCGGTTGATTCATGGATTTGCCCTTCAGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

478

Amino Acids

51.93

Weight (kDa)

7.4

Isoelectric Point (pI)

49.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 219 - 246 2.9e-12 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0011007)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 658
AccI GTMKAC 1 cut(s) 801
AccIII TCCGGA 1 cut(s) 791
AciI CCGC 2 cut(s) 130, 734
AclWI GGATC 6 cut(s) 444, 480, 493, 718, 731, 802
AcsI RAATTY 3 cut(s) 262, 691, 713
AcuI CTGAAG 2 cut(s) 1203, 1413
AcyI GRCGYC 1 cut(s) 659
AfaI GTAC 7 cut(s) 11, 19, 358, 577, 925, 1135, 1323
AfiI CCNNNNNNNGG 2 cut(s) 252, 572
AgsI TTSAA 5 cut(s) 149, 198, 423, 949, 1160
AhlI ACTAGT 2 cut(s) 917, 926
AjnI CCWGG 2 cut(s) 387, 532
AjuI GAANNNNNNNTTGG 2 cut(s) 828, 860
Alw26I GTCTC 2 cut(s) 273, 402
AlwI GGATC 6 cut(s) 444, 480, 493, 718, 731, 802
Aor13HI TCCGGA 1 cut(s) 791
AoxI GGCC 2 cut(s) 964, 1346
ApeKI GCWGC 6 cut(s) 982, 1066, 1069, 1072, 1075, 1237
ApoI RAATTY 3 cut(s) 262, 691, 713
Asp700I GAANNNNTTC 1 cut(s) 944
AspLEI GCGC 2 cut(s) 661, 1301
AspS9I GGNCC 2 cut(s) 829, 1357
AsuC2I CCSGG 1 cut(s) 253
AsuHPI GGTGA 3 cut(s) 218, 402, 1409
AsuII TTCGAA 1 cut(s) 622
AsuNHI GCTAGC 1 cut(s) 160
AvaII GGWCC 2 cut(s) 829, 1357
BamHI GGATCC 2 cut(s) 485, 723
BanI GGYRCC 1 cut(s) 658
BbsI GAAGAC 2 cut(s) 86, 186
BbvI GCAGC 6 cut(s) 969, 1078, 1081, 1084, 1087, 1224
BccI CCATC 6 cut(s) 44, 997, 1062, 1217, 1266, 1304
BceAI ACGGC 3 cut(s) 56, 118, 721
BciT130I CCWGG 2 cut(s) 389, 534
BclI TGATCA 1 cut(s) 211
BcnI CCSGG 1 cut(s) 253
BcoDI GTCTC 2 cut(s) 273, 402
BcuI ACTAGT 2 cut(s) 917, 926
BfaI CTAG 7 cut(s) 161, 651, 918, 927, 1325, 1392, 1435
BfmI CTRYAG 1 cut(s) 744
BfoI RGCGCY 2 cut(s) 662, 1302
BisI GCNGC 6 cut(s) 983, 1067, 1070, 1073, 1076, 1238
BlsI GCNGC 6 cut(s) 984, 1068, 1071, 1074, 1077, 1239
BmcAI AGTACT 2 cut(s) 925, 1135
Bme1390I CCNGG 3 cut(s) 253, 389, 534
Bme18I GGWCC 2 cut(s) 829, 1357
BmgT120I GGNCC 2 cut(s) 829, 1357
BmiI GGNNCC 4 cut(s) 487, 660, 725, 790
BmrFI CCNGG 3 cut(s) 253, 389, 534
BmrI ACTGGG 2 cut(s) 348, 729
BmsI GCATC 1 cut(s) 889
BmtI GCTAGC 1 cut(s) 164
BmuI ACTGGG 2 cut(s) 348, 729
BpiI GAAGAC 2 cut(s) 86, 186
BpmI CTGGAG 1 cut(s) 371
Bpu14I TTCGAA 1 cut(s) 622
BpuMI CCSGG 1 cut(s) 253
BsaBI GATNNNNATC 1 cut(s) 1257
BsaHI GRCGYC 1 cut(s) 659
BsaJI CCNNGG 4 cut(s) 581, 1186, 1210, 1360
BsaWI WCCGGW 1 cut(s) 791
Bsc4I CCNNNNNNNGG 2 cut(s) 252, 572
Bse1I ACTGG 5 cut(s) 354, 378, 487, 724, 1039
Bse3DI GCAATG 2 cut(s) 86, 708
Bse8I GATNNNNATC 1 cut(s) 1257
BseAI TCCGGA 1 cut(s) 791
BseBI CCWGG 2 cut(s) 389, 534
BseDI CCNNGG 4 cut(s) 581, 1186, 1210, 1360
BseGI GGATG 5 cut(s) 271, 374, 755, 1043, 1150
BseJI GATNNNNATC 1 cut(s) 1257
BseLI CCNNNNNNNGG 2 cut(s) 252, 572
BseMI GCAATG 2 cut(s) 86, 708
BseMII CTCAG 2 cut(s) 419, 1042
BseNI ACTGG 5 cut(s) 354, 378, 487, 724, 1039
BseRI GAGGAG 1 cut(s) 1261
BseXI GCAGC 6 cut(s) 969, 1078, 1081, 1084, 1087, 1224
BseYI CCCAGC 2 cut(s) 727, 1021
BsgI GTGCAG 1 cut(s) 728
Bsh1285I CGRYCG 1 cut(s) 669
BshFI GGCC 2 cut(s) 966, 1348
BshNI GGYRCC 1 cut(s) 658
BsiEI CGRYCG 1 cut(s) 669
BsiSI CCGG 2 cut(s) 252, 792
BslFI GGGAC 1 cut(s) 1142
BslI CCNNNNNNNGG 2 cut(s) 252, 572
BsmAI GTCTC 2 cut(s) 273, 402
BsmBI CGTCTC 1 cut(s) 273
BsmFI GGGAC 1 cut(s) 1142
BsmI GAATGC 1 cut(s) 1034
BsnI GGCC 2 cut(s) 966, 1348
Bsp119I TTCGAA 1 cut(s) 622
Bsp13I TCCGGA 1 cut(s) 791
Bsp1407I TGTACA 1 cut(s) 17
Bsp19I CCATGG 2 cut(s) 1186, 1360
BspACI CCGC 2 cut(s) 130, 734
BspANI GGCC 2 cut(s) 966, 1348
BspCNI CTCAG 2 cut(s) 418, 1041
BspEI TCCGGA 1 cut(s) 791
BspHI TCATGA 3 cut(s) 457, 931, 1060
BspLI GGNNCC 4 cut(s) 487, 660, 725, 790
BspMAI CTGCAG 1 cut(s) 748
BspOI GCTAGC 1 cut(s) 164
BspPI GGATC 6 cut(s) 444, 480, 493, 718, 731, 802
BspT104I TTCGAA 1 cut(s) 622
BspT107I GGYRCC 1 cut(s) 658
BsrDI GCAATG 2 cut(s) 86, 708
BsrGI TGTACA 1 cut(s) 17
BsrI ACTGG 5 cut(s) 354, 378, 487, 724, 1039
BssECI CCNNGG 4 cut(s) 581, 1186, 1210, 1360
BssNI GRCGYC 1 cut(s) 659
BssT1I CCWWGG 3 cut(s) 1186, 1210, 1360
Bst2UI CCWGG 2 cut(s) 389, 534
Bst4CI ACNGT 3 cut(s) 670, 1133, 1267
Bst6I CTCTTC 3 cut(s) 424, 629, 1099
BstACI GRCGYC 1 cut(s) 659
BstAUI TGTACA 1 cut(s) 17
BstBI TTCGAA 1 cut(s) 622
BstC8I GCNNGC 3 cut(s) 35, 162, 748
BstDEI CTNAG 2 cut(s) 405, 1028
BstDSI CCRYGG 3 cut(s) 581, 1186, 1360
BstF5I GGATG 5 cut(s) 271, 374, 755, 1043, 1150
BstH2I RGCGCY 2 cut(s) 662, 1302
BstHHI GCGC 2 cut(s) 661, 1301
BstMAI GTCTC 2 cut(s) 273, 402
BstMCI CGRYCG 1 cut(s) 669
BstMWI GCNNNNNNNGC 6 cut(s) 557, 1031, 1072, 1075, 1305, 1345
BstNI CCWGG 2 cut(s) 389, 534
BstNSI RCATGY 2 cut(s) 193, 1015
BstSCI CCNGG 3 cut(s) 251, 387, 532
BstSFI CTRYAG 1 cut(s) 744
BstV1I GCAGC 6 cut(s) 969, 1078, 1081, 1084, 1087, 1224
BstV2I GAAGAC 2 cut(s) 86, 186
BstX2I RGATCY 4 cut(s) 449, 485, 723, 794
BstXI CCANNNNNNTGG 1 cut(s) 616
BstYI RGATCY 4 cut(s) 449, 485, 723, 794
BsuRI GGCC 2 cut(s) 966, 1348
BtgI CCRYGG 3 cut(s) 581, 1186, 1360
BtgZI GCGATG 1 cut(s) 1323
BtsCI GGATG 5 cut(s) 271, 374, 755, 1043, 1150
BtsIMutI CAGTG 2 cut(s) 717, 1036
Cac8I GCNNGC 3 cut(s) 35, 162, 748
CciI TCATGA 3 cut(s) 457, 931, 1060
CfoI GCGC 2 cut(s) 661, 1301
Cfr13I GGNCC 2 cut(s) 829, 1357
CseI GACGC 1 cut(s) 80
CsiI ACCWGGT 1 cut(s) 532
Csp6I GTAC 7 cut(s) 10, 18, 357, 576, 924, 1134, 1322
CviAII CATG 9 cut(s) 65, 190, 458, 932, 1012, 1061, 1187, 1361, 1416
CviQI GTAC 7 cut(s) 10, 18, 357, 576, 924, 1134, 1322
DdeI CTNAG 2 cut(s) 405, 1028
DinI GGCGCC 1 cut(s) 660
DraI TTTAAA 1 cut(s) 1197
Eam1104I CTCTTC 3 cut(s) 424, 629, 1099
EarI CTCTTC 3 cut(s) 424, 629, 1099
EciI GGCGGA 1 cut(s) 119
Eco130I CCWWGG 3 cut(s) 1186, 1210, 1360
Eco147I AGGCCT 2 cut(s) 966, 1348
Eco47I GGWCC 2 cut(s) 829, 1357
Eco57I CTGAAG 2 cut(s) 1203, 1413
EcoRI GAATTC 2 cut(s) 262, 713
EcoRII CCWGG 2 cut(s) 387, 532
EcoT14I CCWWGG 3 cut(s) 1186, 1210, 1360
EgeI GGCGCC 1 cut(s) 660
EheI GGCGCC 1 cut(s) 660
ErhI CCWWGG 3 cut(s) 1186, 1210, 1360
Esp3I CGTCTC 1 cut(s) 273
FaeI CATG 9 cut(s) 68, 193, 461, 935, 1015, 1064, 1190, 1364, 1419
FalI AAGNNNNNCTT 2 cut(s) 178, 210
FaqI GGGAC 1 cut(s) 1142
FatI CATG 9 cut(s) 64, 189, 457, 931, 1011, 1060, 1186, 1360, 1415
FbaI TGATCA 1 cut(s) 211
FblI GTMKAC 1 cut(s) 801
Fnu4HI GCNGC 6 cut(s) 983, 1067, 1070, 1073, 1076, 1238
FokI GGATG 5 cut(s) 258, 361, 742, 1030, 1137
Fsp4HI GCNGC 6 cut(s) 983, 1067, 1070, 1073, 1076, 1238
FspBI CTAG 7 cut(s) 161, 651, 918, 927, 1325, 1392, 1435
GlaI GCGC 2 cut(s) 660, 1300
GluI GCNGC 6 cut(s) 983, 1067, 1070, 1073, 1076, 1238
GsaI CCCAGC 2 cut(s) 731, 1025
GsuI CTGGAG 1 cut(s) 371
HaeII RGCGCY 2 cut(s) 662, 1302
HaeIII GGCC 2 cut(s) 966, 1348
HapII CCGG 2 cut(s) 252, 792
HgaI GACGC 1 cut(s) 80
HhaI GCGC 2 cut(s) 661, 1301
Hin1I GRCGYC 1 cut(s) 659
Hin1II CATG 9 cut(s) 68, 193, 461, 935, 1015, 1064, 1190, 1364, 1419
Hin6I GCGC 2 cut(s) 659, 1299
HinP1I GCGC 2 cut(s) 659, 1299
HincII GTYRAC 1 cut(s) 1230
HindII GTYRAC 1 cut(s) 1230
HindIII AAGCTT 1 cut(s) 1401
HinfI GANTC 5 cut(s) 123, 170, 242, 313, 1412
HpaII CCGG 2 cut(s) 252, 792
HphI GGTGA 3 cut(s) 218, 402, 1409
Hpy166II GTNNAC 7 cut(s) 18, 359, 578, 802, 832, 1009, 1230
Hpy188I TCNGA 8 cut(s) 261, 301, 454, 490, 675, 698, 1222, 1432
Hpy188III TCNNGA 9 cut(s) 120, 215, 458, 765, 792, 932, 1061, 1157, 1380
Hpy8I GTNNAC 7 cut(s) 18, 359, 578, 802, 832, 1009, 1230
Hpy99I CGWCG 1 cut(s) 667
HpyAV CCTTC 4 cut(s) 762, 825, 1058, 1437
HpyCH4III ACNGT 3 cut(s) 670, 1133, 1267
HpyCH4IV ACGT 1 cut(s) 811
HpyCH4V TGCA 7 cut(s) 64, 283, 524, 709, 746, 1015, 1034
HpyF10VI GCNNNNNNNGC 6 cut(s) 557, 1031, 1072, 1075, 1305, 1345
HpyF3I CTNAG 2 cut(s) 405, 1028
HpySE526I ACGT 1 cut(s) 811
Hsp92I GRCGYC 1 cut(s) 659
Hsp92II CATG 9 cut(s) 68, 193, 461, 935, 1015, 1064, 1190, 1364, 1419
HspAI GCGC 2 cut(s) 659, 1299
KasI GGCGCC 1 cut(s) 658
Kpn2I TCCGGA 1 cut(s) 791
Ksp22I TGATCA 1 cut(s) 211
LmnI GCTCC 2 cut(s) 565, 794
Lsp1109I GCAGC 6 cut(s) 969, 1078, 1081, 1084, 1087, 1224
LweI GCATC 1 cut(s) 889
MabI ACCWGGT 1 cut(s) 532
MaeI CTAG 7 cut(s) 161, 651, 918, 927, 1325, 1392, 1435
MaeII ACGT 1 cut(s) 811
MaeIII GTNAC 1 cut(s) 408
MfeI CAATTG 1 cut(s) 1166
MflI RGATCY 4 cut(s) 449, 485, 723, 794
Mly113I GGCGCC 1 cut(s) 659
MmeI TCCRAC 1 cut(s) 324
MroI TCCGGA 1 cut(s) 791
MroXI GAANNNNTTC 1 cut(s) 944
MseI TTAA 4 cut(s) 99, 1104, 1196, 1371
MslI CAYNNNNRTG 1 cut(s) 1059
MspA1I CMGCKG 1 cut(s) 982
MspI CCGG 2 cut(s) 252, 792
MspR9I CCNGG 3 cut(s) 253, 389, 534
MunI CAATTG 1 cut(s) 1166
Mva1269I GAATGC 1 cut(s) 1034
MvaI CCWGG 2 cut(s) 389, 534
MwoI GCNNNNNNNGC 6 cut(s) 557, 1031, 1072, 1075, 1305, 1345
NarI GGCGCC 1 cut(s) 659
NciI CCSGG 1 cut(s) 253
NcoI CCATGG 2 cut(s) 1186, 1360
NheI GCTAGC 1 cut(s) 160
NlaIII CATG 9 cut(s) 68, 193, 461, 935, 1015, 1064, 1190, 1364, 1419
NlaIV GGNNCC 4 cut(s) 487, 660, 725, 790
NmuCI GTSAC 1 cut(s) 408
NspI RCATGY 2 cut(s) 193, 1015
NspV TTCGAA 1 cut(s) 622
PagI TCATGA 3 cut(s) 457, 931, 1060
PceI AGGCCT 2 cut(s) 966, 1348
PctI GAATGC 1 cut(s) 1034
PdmI GAANNNNTTC 1 cut(s) 944
PfeI GAWTC 5 cut(s) 123, 170, 242, 313, 1412
PkrI GCNGC 6 cut(s) 984, 1068, 1071, 1074, 1077, 1239
PluTI GGCGCC 1 cut(s) 662
Psp6I CCWGG 2 cut(s) 387, 532
PspFI CCCAGC 2 cut(s) 727, 1021
PspGI CCWGG 2 cut(s) 387, 532
PspN4I GGNNCC 4 cut(s) 487, 660, 725, 790
PspPI GGNCC 2 cut(s) 829, 1357
PstI CTGCAG 1 cut(s) 748
PsuI RGATCY 4 cut(s) 449, 485, 723, 794
PvuII CAGCTG 1 cut(s) 982
RsaI GTAC 7 cut(s) 11, 19, 358, 577, 925, 1135, 1323
RsaNI GTAC 7 cut(s) 10, 18, 357, 576, 924, 1134, 1322
RseI CAYNNNNRTG 1 cut(s) 1059
SaqAI TTAA 4 cut(s) 99, 1104, 1196, 1371
SatI GCNGC 6 cut(s) 983, 1067, 1070, 1073, 1076, 1238
Sau96I GGNCC 2 cut(s) 829, 1357
ScaI AGTACT 2 cut(s) 925, 1135
ScrFI CCNGG 3 cut(s) 253, 389, 534
SexAI ACCWGGT 1 cut(s) 532
SfaNI GCATC 1 cut(s) 889
SfcI CTRYAG 1 cut(s) 744
SfoI GGCGCC 1 cut(s) 660
SfuI TTCGAA 1 cut(s) 622
SinI GGWCC 2 cut(s) 829, 1357
SmiI ATTTAAAT 1 cut(s) 1197
SmiMI CAYNNNNRTG 1 cut(s) 1059
SpeI ACTAGT 2 cut(s) 917, 926
SseBI AGGCCT 2 cut(s) 966, 1348
SsiI CCGC 2 cut(s) 130, 734
SspDI GGCGCC 1 cut(s) 658
SspI AATATT 1 cut(s) 910
SspMI CTAG 7 cut(s) 161, 651, 918, 927, 1325, 1392, 1435
StuI AGGCCT 2 cut(s) 966, 1348
StyD4I CCNGG 3 cut(s) 251, 387, 532
StyI CCWWGG 3 cut(s) 1186, 1210, 1360
SwaI ATTTAAAT 1 cut(s) 1197
TaaI ACNGT 3 cut(s) 670, 1133, 1267
TaiI ACGT 1 cut(s) 814
TaqI TCGA 7 cut(s) 518, 622, 629, 689, 766, 774, 1379
TatI WGTACW 5 cut(s) 9, 17, 356, 923, 1133
TfiI GAWTC 5 cut(s) 123, 170, 242, 313, 1412
Tru1I TTAA 4 cut(s) 99, 1104, 1196, 1371
Tru9I TTAA 4 cut(s) 99, 1104, 1196, 1371
TscAI CASTG 2 cut(s) 724, 1036
TseFI GTSAC 1 cut(s) 408
TseI GCWGC 6 cut(s) 982, 1066, 1069, 1072, 1075, 1237
Tsp45I GTSAC 1 cut(s) 408
TspDTI ATGAA 7 cut(s) 363, 474, 528, 855, 953, 1365, 1404
TspGWI ACGGA 1 cut(s) 235
TspRI CASTG 2 cut(s) 724, 1036
VpaK11BI GGWCC 2 cut(s) 829, 1357
XapI RAATTY 3 cut(s) 262, 691, 713
XceI RCATGY 2 cut(s) 193, 1015
XmiI GTMKAC 1 cut(s) 801
XmnI GAANNNNTTC 1 cut(s) 944
XspI CTAG 7 cut(s) 161, 651, 918, 927, 1325, 1392, 1435
ZrmI AGTACT 2 cut(s) 925, 1135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.