AT4G39720

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0011007
Physical Location & Seq
Reverse (-)
18428809 .. 18431136
2328 bp
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UTR
Exon/CDS
Intron
AT4G39720.4

Sequence Viewer

Length: 873 bp
ATGGAGTCCGGTAATAGTAGTAGCATGCAATCTTCAAGCGGCGGTGGCGGAGGAGGAGAAGAAGAATACGATTCACGCGCCGCAGATCAATCCATTTCCGCCTTCTTCGACCACCACAACAACCACGTGTCATCTATACCCACGCCGCAACAAAACCATCGCAACCTCCTCCATTTCGACCATAACAACAACAACTCTCTAATACCACCAAACTACTTTAACAACAACACGTTCTTACCCGTAAACCAACAACCCGACCCGATTTCTCAACTCGACCTCCGAACCTCCTCCGCCACGTCATCACTCCCTCCTACTAACAATATAGGAGTAATCAAGAAAACAAAGAAAAGATCTCGAGCATCAAGAAGAGCACCAACGACGGTTCTAACGACGGATACTTCCAACTTCCGAGCGATGGTTCAAGAGTTTACCGGAATCCCAGCTCCACCGCTATTCAACAACAACTCCATCGTGAACACCACGCGCCTCAACACTTTCCTCGGCTTGTCTTCTTCTTCGCCAAACACTTACAACACCAACAATCTCTTGTTACGACCGTTTGCTCAAAAACTCACTCCAGCGACTCCTCTCTTATCCGGATCACAAATTCAGCAATATCAAAACCCTAACAACGGTTTCGAGGATATGAATCTGCAAGCTCTTCTTCAAGCTCATATTTCAAACCCTAGAAGCAATGAGCACGATCAGTTTGGTCTTGGTATGATGCAGACTCCATCTACTAATCCTCCTACTACAACGGCAGCGGCTAACGGGAACATAAACACCGGTGATAATGGAAGCTACGGTGGCTCCGATCATGAACATAATAATGACGGTACTTGGTTATCTTCGTCTTCCGACCAGAGAACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

290

Amino Acids

31.48

Weight (kDa)

6.18

Isoelectric Point (pI)

53.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 123 - 150 1.5e-12 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011007)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35830 AT4G39720 AT4G39720 AT4G39720 AT4G39720
fragaria_vesca FvH4_5g37690
malus_domestica MD08G1181100.v1.1 MD15G1366700.v1.1
prunus_persica Prupe.1G514600_v2.0.a1
pyrus_communis pycom08g15480
rosa_chinensis RchiOBHm_Chr7g0239391
rosa_laevigata RLG00000000760
rosa_multiflora Rmu_sc0008456.1_g000009
rosa_roxburghii Rroxscaffold_3G00220970
rosa_rugosa Rorug07G0327800
rosa_samantha Rh7AG481000 Rh7BG453700 Rh7CG499000 Rh7DG467100
rosa_wichuraiana Rw7G040310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 78, 484
AccIII TCCGGA 1 cut(s) 596
AciI CCGC 9 cut(s) 39, 42, 48, 81, 99, 146, 291, 449, 764
AclWI GGATC 1 cut(s) 607
AcsI RAATTY 1 cut(s) 606
AcvI CACGTG 1 cut(s) 127
AfaI GTAC 1 cut(s) 838
AfiI CCNNNNNNNGG 2 cut(s) 415, 632
AflIII ACRYGT 2 cut(s) 126, 228
AgeI ACCGGT 1 cut(s) 785
AgsI TTSAA 5 cut(s) 36, 422, 457, 668, 681
AjiI CACGTC 1 cut(s) 297
AluBI AGCT 4 cut(s) 443, 659, 671, 801
AluI AGCT 4 cut(s) 443, 659, 671, 801
Alw21I GWGCWC 2 cut(s) 373, 702
AlwI GGATC 1 cut(s) 607
Ama87I CYCGRG 1 cut(s) 354
Aor13HI TCCGGA 1 cut(s) 596
ApeKI GCWGC 1 cut(s) 761
ApoI RAATTY 1 cut(s) 606
AsiGI ACCGGT 1 cut(s) 785
AspLEI GCGC 2 cut(s) 80, 486
AsuHPI GGTGA 1 cut(s) 800
AvaI CYCGRG 1 cut(s) 354
BbrPI CACGTG 1 cut(s) 127
BbsI GAAGAC 2 cut(s) 501, 846
Bbv12I GWGCWC 2 cut(s) 373, 702
BbvI GCAGC 1 cut(s) 773
BccI CCATC 4 cut(s) 165, 409, 476, 742
BceAI ACGGC 1 cut(s) 774
BciVI GTATCC 1 cut(s) 388
BfaI CTAG 1 cut(s) 687
BfuI GTATCC 1 cut(s) 388
BglII AGATCT 1 cut(s) 350
BisI GCNGC 5 cut(s) 40, 81, 146, 762, 765
BlsI GCNGC 5 cut(s) 41, 82, 147, 763, 766
BmeT110I CYCGRG 1 cut(s) 354
BmgBI CACGTC 1 cut(s) 297
BmiI GGNNCC 1 cut(s) 811
BmsI GCATC 2 cut(s) 368, 714
BpiI GAAGAC 2 cut(s) 501, 846
BpmI CTGGAG 1 cut(s) 561
BsaAI YACGTR 1 cut(s) 127
BsaBI GATNNNNATC 1 cut(s) 648
BsaJI CCNNGG 1 cut(s) 499
BsaWI WCCGGW 4 cut(s) 8, 431, 596, 785
BsaXI ACNNNNNCTCC 8 cut(s) 261, 291, 449, 479, 730, 760, 794, 824
Bsc4I CCNNNNNNNGG 2 cut(s) 415, 632
Bse118I RCCGGY 1 cut(s) 785
Bse3DI GCAATG 1 cut(s) 700
Bse8I GATNNNNATC 1 cut(s) 648
BseAI TCCGGA 1 cut(s) 596
BseDI CCNNGG 1 cut(s) 499
BseJI GATNNNNATC 1 cut(s) 648
BseLI CCNNNNNNNGG 2 cut(s) 415, 632
BseMI GCAATG 1 cut(s) 700
BseRI GAGGAG 5 cut(s) 66, 69, 158, 277, 576
BseXI GCAGC 1 cut(s) 773
BseYI CCCAGC 1 cut(s) 439
Bsh1236I CGCG 2 cut(s) 78, 484
Bsh1285I CGRYCG 1 cut(s) 557
BshTI ACCGGT 1 cut(s) 785
BsiEI CGRYCG 1 cut(s) 557
BsiHKAI GWGCWC 2 cut(s) 373, 702
BsiHKCI CYCGRG 1 cut(s) 354
BsiSI CCGG 4 cut(s) 9, 432, 597, 786
BslI CCNNNNNNNGG 2 cut(s) 415, 632
BsoBI CYCGRG 1 cut(s) 354
Bsp1286I GDGCHC 2 cut(s) 373, 702
Bsp13I TCCGGA 1 cut(s) 596
Bsp143I GATC 5 cut(s) 85, 350, 599, 703, 814
BspACI CCGC 9 cut(s) 39, 42, 48, 81, 99, 146, 291, 449, 764
BspEI TCCGGA 1 cut(s) 596
BspFNI CGCG 2 cut(s) 78, 484
BspHI TCATGA 1 cut(s) 817
BspLI GGNNCC 1 cut(s) 811
BspPI GGATC 1 cut(s) 607
BspQI GCTCTTC 2 cut(s) 361, 666
BsrDI GCAATG 1 cut(s) 700
BsrFI RCCGGY 1 cut(s) 785
BssAI RCCGGY 1 cut(s) 785
BssECI CCNNGG 1 cut(s) 499
BssMI GATC 5 cut(s) 85, 350, 599, 703, 814
Bst4CI ACNGT 5 cut(s) 382, 558, 635, 806, 836
Bst6I CTCTTC 2 cut(s) 361, 666
BstBAI YACGTR 1 cut(s) 127
BstC8I GCNNGC 2 cut(s) 26, 657
BstFNI CGCG 2 cut(s) 78, 484
BstHHI GCGC 2 cut(s) 80, 486
BstKTI GATC 5 cut(s) 88, 353, 602, 706, 817
BstMBI GATC 5 cut(s) 85, 350, 599, 703, 814
BstMCI CGRYCG 1 cut(s) 557
BstMWI GCNNNNNNNGC 2 cut(s) 45, 807
BstNSI RCATGY 1 cut(s) 28
BstUI CGCG 2 cut(s) 78, 484
BstV1I GCAGC 1 cut(s) 773
BstV2I GAAGAC 2 cut(s) 501, 846
BstX2I RGATCY 1 cut(s) 350
BstYI RGATCY 1 cut(s) 350
BsuI GTATCC 1 cut(s) 388
BtgZI GCGATG 2 cut(s) 143, 428
BtrI CACGTC 1 cut(s) 297
Cac8I GCNNGC 2 cut(s) 26, 657
CciI TCATGA 1 cut(s) 817
CfoI GCGC 2 cut(s) 80, 486
Cfr10I RCCGGY 1 cut(s) 785
Csp6I GTAC 1 cut(s) 837
CspAI ACCGGT 1 cut(s) 785
CviAII CATG 2 cut(s) 25, 818
CviJI RGCY 7 cut(s) 443, 504, 659, 671, 767, 801, 810
CviKI_1 RGCY 7 cut(s) 443, 504, 659, 671, 767, 801, 810
CviQI GTAC 1 cut(s) 837
DpnI GATC 5 cut(s) 87, 352, 601, 705, 816
DpnII GATC 5 cut(s) 85, 350, 599, 703, 814
Eam1104I CTCTTC 2 cut(s) 361, 666
EarI CTCTTC 2 cut(s) 361, 666
EciI GGCGGA 3 cut(s) 63, 88, 280
Eco72I CACGTG 1 cut(s) 127
Eco88I CYCGRG 1 cut(s) 354
FaeI CATG 2 cut(s) 28, 821
FalI AAGNNNNNCTT 2 cut(s) 648, 680
FatI CATG 2 cut(s) 24, 817
Fnu4HI GCNGC 5 cut(s) 40, 81, 146, 762, 765
Fsp4HI GCNGC 5 cut(s) 40, 81, 146, 762, 765
FspBI CTAG 1 cut(s) 687
GlaI GCGC 2 cut(s) 79, 485
GluI GCNGC 5 cut(s) 40, 81, 146, 762, 765
GsaI CCCAGC 1 cut(s) 443
GsuI CTGGAG 1 cut(s) 561
HapII CCGG 4 cut(s) 9, 432, 597, 786
HhaI GCGC 2 cut(s) 80, 486
Hin1II CATG 2 cut(s) 28, 821
Hin6I GCGC 2 cut(s) 78, 484
HinP1I GCGC 2 cut(s) 78, 484
HinfI GANTC 6 cut(s) 5, 71, 435, 583, 649, 730
HpaII CCGG 4 cut(s) 9, 432, 597, 786
HphI GGTGA 1 cut(s) 800
Hpy166II GTNNAC 3 cut(s) 244, 429, 475
Hpy188I TCNGA 4 cut(s) 281, 410, 814, 859
Hpy188III TCNNGA 7 cut(s) 334, 354, 363, 422, 472, 597, 818
Hpy8I GTNNAC 3 cut(s) 244, 429, 475
Hpy99I CGWCG 2 cut(s) 382, 394
HpyAV CCTTC 1 cut(s) 112
HpyCH4III ACNGT 5 cut(s) 382, 558, 635, 806, 836
HpyCH4IV ACGT 3 cut(s) 126, 230, 296
HpyCH4V TGCA 3 cut(s) 28, 655, 727
HpyF10VI GCNNNNNNNGC 2 cut(s) 45, 807
HpySE526I ACGT 3 cut(s) 126, 230, 296
Hsp92II CATG 2 cut(s) 28, 821
HspAI GCGC 2 cut(s) 78, 484
Kpn2I TCCGGA 1 cut(s) 596
Kzo9I GATC 5 cut(s) 85, 350, 599, 703, 814
LguI GCTCTTC 2 cut(s) 361, 666
LmnI GCTCC 2 cut(s) 448, 815
LpnPI CCDG 6 cut(s) 22, 445, 453, 591, 610, 799
Lsp1109I GCAGC 1 cut(s) 773
LweI GCATC 2 cut(s) 368, 714
MaeI CTAG 1 cut(s) 687
MaeII ACGT 3 cut(s) 126, 230, 296
MaeIII GTNAC 1 cut(s) 549
MalI GATC 5 cut(s) 87, 352, 601, 705, 816
MboI GATC 5 cut(s) 85, 350, 599, 703, 814
MflI RGATCY 1 cut(s) 350
MhlI GDGCHC 2 cut(s) 373, 702
MluCI AATT 1 cut(s) 606
MlyI GAGTC 3 cut(s) 14, 577, 724
MmeI TCCRAC 1 cut(s) 426
MroI TCCGGA 1 cut(s) 596
MseI TTAA 1 cut(s) 219
MslI CAYNNNNRTG 1 cut(s) 828
MspA1I CMGCKG 1 cut(s) 764
MspI CCGG 4 cut(s) 9, 432, 597, 786
MvnI CGCG 2 cut(s) 78, 484
MwoI GCNNNNNNNGC 2 cut(s) 45, 807
NdeII GATC 5 cut(s) 85, 350, 599, 703, 814
NlaIII CATG 2 cut(s) 28, 821
NlaIV GGNNCC 1 cut(s) 811
NmeAIII GCCGAG 1 cut(s) 480
NspI RCATGY 1 cut(s) 28
PaeI GCATGC 1 cut(s) 28
PaeR7I CTCGAG 1 cut(s) 354
PagI TCATGA 1 cut(s) 817
PciSI GCTCTTC 2 cut(s) 361, 666
PcsI WCGNNNNNNNCGW 2 cut(s) 386, 810
PfeI GAWTC 3 cut(s) 71, 435, 649
PinAI ACCGGT 1 cut(s) 785
PkrI GCNGC 5 cut(s) 41, 82, 147, 763, 766
PleI GAGTC 3 cut(s) 13, 577, 724
PmaCI CACGTG 1 cut(s) 127
PmlI CACGTG 1 cut(s) 127
PpsI GAGTC 3 cut(s) 13, 577, 724
Ppu21I YACGTR 1 cut(s) 127
PspCI CACGTG 1 cut(s) 127
PspFI CCCAGC 1 cut(s) 439
PspN4I GGNNCC 1 cut(s) 811
PsuI RGATCY 1 cut(s) 350
RsaI GTAC 1 cut(s) 838
RsaNI GTAC 1 cut(s) 837
RseI CAYNNNNRTG 1 cut(s) 828
SapI GCTCTTC 2 cut(s) 361, 666
SaqAI TTAA 1 cut(s) 219
SatI GCNGC 5 cut(s) 40, 81, 146, 762, 765
Sau3AI GATC 5 cut(s) 85, 350, 599, 703, 814
SchI GAGTC 3 cut(s) 14, 577, 724
SduI GDGCHC 2 cut(s) 373, 702
SfaNI GCATC 2 cut(s) 368, 714
Sfr274I CTCGAG 1 cut(s) 354
SgrAI CRCCGGYG 1 cut(s) 785
SlaI CTCGAG 1 cut(s) 354
SmiMI CAYNNNNRTG 1 cut(s) 828
SmlI CTYRAG 1 cut(s) 354
SmoI CTYRAG 1 cut(s) 354
SphI GCATGC 1 cut(s) 28
Sse9I AATT 1 cut(s) 606
SsiI CCGC 9 cut(s) 39, 42, 48, 81, 99, 146, 291, 449, 764
SspMI CTAG 1 cut(s) 687
TaaI ACNGT 5 cut(s) 382, 558, 635, 806, 836
TaiI ACGT 3 cut(s) 129, 233, 299
TaqI TCGA 5 cut(s) 108, 177, 273, 355, 639
TasI AATT 1 cut(s) 606
TauI GCSGC 4 cut(s) 42, 83, 148, 767
TfiI GAWTC 3 cut(s) 71, 435, 649
Tru1I TTAA 1 cut(s) 219
Tru9I TTAA 1 cut(s) 219
TseI GCWGC 1 cut(s) 761
TspDTI ATGAA 2 cut(s) 662, 834
TspGWI ACGGA 1 cut(s) 407
XapI RAATTY 1 cut(s) 606
XceI RCATGY 1 cut(s) 28
XhoI CTCGAG 1 cut(s) 354
XspI CTAG 1 cut(s) 687
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.